CuGenDBv2

Gene ID	PI0015662
Organism	Cucumis metuliferus PI 482460 (Melon (PI 482460) v1)
Description	protein LTV1 homolog
Genome location	chr02:13723182..13723981
RNA-Seq Expression	PI0015662
Synteny	PI0015662
Gene Ontology terms	GO:0000056 - ribosomal small subunit export from nucleus (biological process) GO:0042274 - ribosomal small subunit biogenesis (biological process) GO:0005634 - nucleus (cellular component) GO:0005829 - cytosol (cellular component) GO:0030688 - preribosome, small subunit precursor (cellular component)
InterPro domains	IPR007307 - Low temperature viability protein Ltv1

Homology

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GenBank top hits

e value

%identity

Alignment

XP_008448616.1 PREDICTED: protein LTV1 homolog [Cucumis melo]

5.9e-67

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Query:  MGKNKFFDKKKSTTFQLLARDSSDPNYDGTAATDRVFLCVDKH----------------SACYDEDPNSIFVHAPEDCDEEENGDFGLSMQSCGEVGGTS
        MGK KFFDKKKS TFQLLARDSSDPNYDGTAATDRVF+ VD H                SACYDEDPNSIF  A ED DEEENG FG SMQS GEVGGTS
Subjt:  MGKNKFFDKKKSTTFQLLARDSSDPNYDGTAATDRVFLCVDKH----------------SACYDEDPNSIFVHAPEDCDEEENGDFGLSMQSCGEVGGTS

Query:  SLPKNVKRDILALGFLDEGYNYLWHLREIKNTGGGSTFYHNPKAKRNQVPRDEKACDASRVIVSKENIDTDENIYKVAPK
        SLP+NV+R+IL LGF D+GYNYL HLREIKNTGGGSTFY NPKAK NQVPRDEKA DASR++VSK N+D DEN+YKVA K
Subjt:  SLPKNVKRDILALGFLDEGYNYLWHLREIKNTGGGSTFYHNPKAKRNQVPRDEKACDASRVIVSKENIDTDENIYKVAPK

XP_011650323.1 protein LTV1 homolog [Cucumis sativus]

6.5e-66

74.44

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Query:  MGKNKFFDKKKSTTFQLLARDSSDPNYDGTAATDRVFLCVDKH----------------SACYDEDPNSIFVHAPEDCDEEENGDFGLSMQSCGEVGGTS
        MGK KFFDKKKS TFQLLARDSSDPNYDGTAATDRVF+ VD H                SACYDEDPNSIF  A ED DEEENG FG SMQ  G+VGGTS
Subjt:  MGKNKFFDKKKSTTFQLLARDSSDPNYDGTAATDRVFLCVDKH----------------SACYDEDPNSIFVHAPEDCDEEENGDFGLSMQSCGEVGGTS

Query:  SLPKNVKRDILALGFLDEGYNYLWHLREIKNTGGGSTFYHNPKAKRNQVPRDEKACDASRVIVSKENIDTDENIYKVAPK
        SLP+NV++DIL LGF D+GYNYL HLREIKNTGGGSTFY NPKAK NQVPRDEKA DASR+IVSK N+D DEN YKVA K
Subjt:  SLPKNVKRDILALGFLDEGYNYLWHLREIKNTGGGSTFYHNPKAKRNQVPRDEKACDASRVIVSKENIDTDENIYKVAPK

XP_022940362.1 protein LTV1 homolog [Cucurbita moschata]

1.5e-57

65.24

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Query:  MGKNKFFDKKKSTTFQLLARDSSDPNYDGTAATDRVFLCVDKH----------------SACYDEDPNSIFVHAPEDCDEEENGDFGLSMQSCGEVGGTS
        MGK KFFDKKKS TFQLLARDSSDPNYDGTAATDRVF+ VD H                SA ++E+PNSIF  AP+D D+EENG FG S +S GE+GG +
Subjt:  MGKNKFFDKKKSTTFQLLARDSSDPNYDGTAATDRVFLCVDKH----------------SACYDEDPNSIFVHAPEDCDEEENGDFGLSMQSCGEVGGTS

Query:  SLPKNVKRDILALGFLDEGYNYLWHLREIKNTGGGSTFYHNPKAKRNQVPRDEKACDASRVIVSKENIDTDENI-YKVAPKRTFIAI
        SLP+NV+R+IL LGF D+GYNYL HLR+IKNTGGGS FY+NPKAK NQ+PRDEKA DAS VIVS+   D DENI YKVA K   + +
Subjt:  SLPKNVKRDILALGFLDEGYNYLWHLREIKNTGGGSTFYHNPKAKRNQVPRDEKACDASRVIVSKENIDTDENI-YKVAPKRTFIAI

XP_023525399.1 protein LTV1 homolog [Cucurbita pepo subsp. pepo]

2.5e-57

64.71

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Query:  MGKNKFFDKKKSTTFQLLARDSSDPNYDGTAATDRVFLCVDKH----------------SACYDEDPNSIFVHAPEDCDEEENGDFGLSMQSCGEVGGTS
        MGK KFFDKKKS TFQLLARDSSDPNYDGTAATDRVF+ VD H                SA ++E+PNSIF  AP+D D+EENG FG S +S GE+GG +
Subjt:  MGKNKFFDKKKSTTFQLLARDSSDPNYDGTAATDRVFLCVDKH----------------SACYDEDPNSIFVHAPEDCDEEENGDFGLSMQSCGEVGGTS

Query:  SLPKNVKRDILALGFLDEGYNYLWHLREIKNTGGGSTFYHNPKAKRNQVPRDEKACDASRVIVSKENIDTDENI-YKVAPKRTFIAI
        SLP+NV+R+IL LGF D+GYNYL HLR+IKNTGGGS FY+NPKAK NQ+PRDEKA DAS V+VS+   D DENI YKVA K   + +
Subjt:  SLPKNVKRDILALGFLDEGYNYLWHLREIKNTGGGSTFYHNPKAKRNQVPRDEKACDASRVIVSKENIDTDENI-YKVAPKRTFIAI

XP_038898842.1 protein LTV1 homolog [Benincasa hispida]

3.0e-63

69.89

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Query:  MGKNKFFDKKKSTTFQLLARDSSDPNYDGTAATDRVFLCVDKH----------------SACYDEDPNSIFVHAPEDCDEEENGDFGLSMQSCGEVGGTS
        MGK KFFDKKKS TFQLLARDSSDPNYDGTAATDRVF+ VD H                SACYDEDPNSIF  APED D+E+NG FG S++   EVGGT+
Subjt:  MGKNKFFDKKKSTTFQLLARDSSDPNYDGTAATDRVFLCVDKH----------------SACYDEDPNSIFVHAPEDCDEEENGDFGLSMQSCGEVGGTS

Query:  SLPKNVKRDILALGFLDEGYNYLWHLREIKNTGGGSTFYHNPKAKRNQVPRDEKACDASRVIVSKENIDTDENIYKVAPKRTFIAI
         LP+NV+R+IL LGF D+GYNYL HLREIKNTGGGS FY NPKAK NQVPRDEKA DASRVIVSK NID D NIYKVA K   + +
Subjt:  SLPKNVKRDILALGFLDEGYNYLWHLREIKNTGGGSTFYHNPKAKRNQVPRDEKACDASRVIVSKENIDTDENIYKVAPKRTFIAI

TrEMBL top hits

e value

%identity

Alignment

A0A0A0L517 Uncharacterized protein

3.1e-66

74.44

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Query:  MGKNKFFDKKKSTTFQLLARDSSDPNYDGTAATDRVFLCVDKH----------------SACYDEDPNSIFVHAPEDCDEEENGDFGLSMQSCGEVGGTS
        MGK KFFDKKKS TFQLLARDSSDPNYDGTAATDRVF+ VD H                SACYDEDPNSIF  A ED DEEENG FG SMQ  G+VGGTS
Subjt:  MGKNKFFDKKKSTTFQLLARDSSDPNYDGTAATDRVFLCVDKH----------------SACYDEDPNSIFVHAPEDCDEEENGDFGLSMQSCGEVGGTS

Query:  SLPKNVKRDILALGFLDEGYNYLWHLREIKNTGGGSTFYHNPKAKRNQVPRDEKACDASRVIVSKENIDTDENIYKVAPK
        SLP+NV++DIL LGF D+GYNYL HLREIKNTGGGSTFY NPKAK NQVPRDEKA DASR+IVSK N+D DEN YKVA K
Subjt:  SLPKNVKRDILALGFLDEGYNYLWHLREIKNTGGGSTFYHNPKAKRNQVPRDEKACDASRVIVSKENIDTDENIYKVAPK

A0A1S3BKZ8 protein LTV1 homolog

2.8e-67

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Query:  MGKNKFFDKKKSTTFQLLARDSSDPNYDGTAATDRVFLCVDKH----------------SACYDEDPNSIFVHAPEDCDEEENGDFGLSMQSCGEVGGTS
        MGK KFFDKKKS TFQLLARDSSDPNYDGTAATDRVF+ VD H                SACYDEDPNSIF  A ED DEEENG FG SMQS GEVGGTS
Subjt:  MGKNKFFDKKKSTTFQLLARDSSDPNYDGTAATDRVFLCVDKH----------------SACYDEDPNSIFVHAPEDCDEEENGDFGLSMQSCGEVGGTS

Query:  SLPKNVKRDILALGFLDEGYNYLWHLREIKNTGGGSTFYHNPKAKRNQVPRDEKACDASRVIVSKENIDTDENIYKVAPK
        SLP+NV+R+IL LGF D+GYNYL HLREIKNTGGGSTFY NPKAK NQVPRDEKA DASR++VSK N+D DEN+YKVA K
Subjt:  SLPKNVKRDILALGFLDEGYNYLWHLREIKNTGGGSTFYHNPKAKRNQVPRDEKACDASRVIVSKENIDTDENIYKVAPK

A0A5D3CI19 Protein LTV1-like protein

2.8e-67

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Query:  MGKNKFFDKKKSTTFQLLARDSSDPNYDGTAATDRVFLCVDKH----------------SACYDEDPNSIFVHAPEDCDEEENGDFGLSMQSCGEVGGTS
        MGK KFFDKKKS TFQLLARDSSDPNYDGTAATDRVF+ VD H                SACYDEDPNSIF  A ED DEEENG FG SMQS GEVGGTS
Subjt:  MGKNKFFDKKKSTTFQLLARDSSDPNYDGTAATDRVFLCVDKH----------------SACYDEDPNSIFVHAPEDCDEEENGDFGLSMQSCGEVGGTS

Query:  SLPKNVKRDILALGFLDEGYNYLWHLREIKNTGGGSTFYHNPKAKRNQVPRDEKACDASRVIVSKENIDTDENIYKVAPK
        SLP+NV+R+IL LGF D+GYNYL HLREIKNTGGGSTFY NPKAK NQVPRDEKA DASR++VSK N+D DEN+YKVA K
Subjt:  SLPKNVKRDILALGFLDEGYNYLWHLREIKNTGGGSTFYHNPKAKRNQVPRDEKACDASRVIVSKENIDTDENIYKVAPK

A0A6J1FJD8 protein LTV1 homolog

7.0e-58

65.24

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Query:  MGKNKFFDKKKSTTFQLLARDSSDPNYDGTAATDRVFLCVDKH----------------SACYDEDPNSIFVHAPEDCDEEENGDFGLSMQSCGEVGGTS
        MGK KFFDKKKS TFQLLARDSSDPNYDGTAATDRVF+ VD H                SA ++E+PNSIF  AP+D D+EENG FG S +S GE+GG +
Subjt:  MGKNKFFDKKKSTTFQLLARDSSDPNYDGTAATDRVFLCVDKH----------------SACYDEDPNSIFVHAPEDCDEEENGDFGLSMQSCGEVGGTS

Query:  SLPKNVKRDILALGFLDEGYNYLWHLREIKNTGGGSTFYHNPKAKRNQVPRDEKACDASRVIVSKENIDTDENI-YKVAPKRTFIAI
        SLP+NV+R+IL LGF D+GYNYL HLR+IKNTGGGS FY+NPKAK NQ+PRDEKA DAS VIVS+   D DENI YKVA K   + +
Subjt:  SLPKNVKRDILALGFLDEGYNYLWHLREIKNTGGGSTFYHNPKAKRNQVPRDEKACDASRVIVSKENIDTDENI-YKVAPKRTFIAI

A0A6J1J360 protein LTV1 homolog

5.9e-57

64.17

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Query:  MGKNKFFDKKKSTTFQLLARDSSDPNYDGTAATDRVFLCVDKH----------------SACYDEDPNSIFVHAPEDCDEEENGDFGLSMQSCGEVGGTS
        MGK KFFDKKKS TFQLLARDSSDPNYDGTAATDRVF+ VD H                SA ++E+PNSIF  AP+D D+EENG FG S +S GE+GG +
Subjt:  MGKNKFFDKKKSTTFQLLARDSSDPNYDGTAATDRVFLCVDKH----------------SACYDEDPNSIFVHAPEDCDEEENGDFGLSMQSCGEVGGTS

Query:  SLPKNVKRDILALGFLDEGYNYLWHLREIKNTGGGSTFYHNPKAKRNQVPRDEKACDASRVIVSKENIDTDENI-YKVAPKRTFIAI
        SLP+NV+R+IL LGF D+GYNYL HLR+IKNTGGGS FY+NPKAK NQ+PRDEKA DA+ VIVS+   D  ENI YKVA K   + +
Subjt:  SLPKNVKRDILALGFLDEGYNYLWHLREIKNTGGGSTFYHNPKAKRNQVPRDEKACDASRVIVSKENIDTDENI-YKVAPKRTFIAI

SwissProt top hits

e value

%identity

Alignment

Q10191 Protein LTV1

4.3e-04

26.52

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Query:  MGKNKFFDKKKSTTFQLLARDSSDPNYDGTAATDRVFLCVDKHSACYDEDPNSIFVHAPEDCDEEENGDFGLSMQSCGEVGGTSSLPKNVKRDILALGFL
        MGK KF +K K+ TF L+ R   DP Y    AT+RV +  +  +                           L+ Q+  E  G++  P   +     + F 
Subjt:  MGKNKFFDKKKSTTFQLLARDSSDPNYDGTAATDRVFLCVDKHSACYDEDPNSIFVHAPEDCDEEENGDFGLSMQSCGEVGGTSSLPKNVKRDILALGFL

Query:  DEGYNYLWHLREIKNTGGGSTFYHNPKAKRNQ
        D  Y+Y+ HLR I N    +T+   P  ++ Q
Subjt:  DEGYNYLWHLREIKNTGGGSTFYHNPKAKRNQ

Arabidopsis top hits

e value

%identity

Alignment

AT3G49990.1 unknown protein

2.2e-32

45.6

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Query:  MGKNKFFDKKKSTTFQLLARDSSDPNYDGTAATDRVFLCVDKHSACY---------DEDPNSIFVHAPEDCDEEENGDFGLSMQSCGEVGGTSSLPKNVK
        MGK KF DKKK+ TF+L  RD+SDP Y      D++FL VD++             +E  +S F  APE+       D+G S  S G+   +SSLP +V+
Subjt:  MGKNKFFDKKKSTTFQLLARDSSDPNYDGTAATDRVFLCVDKHSACY---------DEDPNSIFVHAPEDCDEEENGDFGLSMQSCGEVGGTSSLPKNVK

Query:  RDILALGFLDEGYNYLWHLREIKNTGGGSTFYHNPKAKRNQVPRDEKACDASRVIVS---KENIDTDENIYKVAPKRTFIAI
        ++IL LG+ D+GYNYL HLREIKNTGGGS FY NPK +  Q+PRD KA DASRV +S    E  + ++ +Y VA K   + +
Subjt:  RDILALGFLDEGYNYLWHLREIKNTGGGSTFYHNPKAKRNQVPRDEKACDASRVIVS---KENIDTDENIYKVAPKRTFIAI

Sequences

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CDS sequence

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ATGGGAAAGAATAAATTTTTTGACAAGAAGAAATCGACAACTTTCCAATTACTTGCTCGTGACTCATCTGATCCCAATTACGATGGAACTGCTGCCACCGACCGTGTTTT
TCTTTGTGTCGACAAACATTCTGCCTGCTACGATGAAGATCCTAACTCAATATTTGTTCATGCTCCTGAGGATTGTGATGAGGAAGAGAATGGAGATTTTGGGTTGTCTA
TGCAGTCTTGTGGGGAAGTTGGTGGAACGTCGTCATTACCCAAAAATGTTAAAAGAGATATTTTGGCGCTTGGGTTCCTCGATGAGGGTTACAATTATTTGTGGCATCTT
CGGGAGATTAAGAATACTGGTGGTGGTTCGACGTTTTATCATAACCCCAAGGCCAAGCGGAATCAGGTTCCACGGGATGAGAAGGCTTGTGATGCCTCCAGAGTGATTGT
TTCTAAAGAGAACATTGATACCGATGAGAACATCTACAAAGTTGCACCCAAGAGAACGTTTATCGCAATTTGGTTCTGA

mRNA sequence

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Protein sequence

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MGKNKFFDKKKSTTFQLLARDSSDPNYDGTAATDRVFLCVDKHSACYDEDPNSIFVHAPEDCDEEENGDFGLSMQSCGEVGGTSSLPKNVKRDILALGFLDEGYNYLWHL
REIKNTGGGSTFYHNPKAKRNQVPRDEKACDASRVIVSKENIDTDENIYKVAPKRTFIAIWF

PI0015662 (gene) of Melon (PI 482460) v1 genome