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PI0015688 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0015688
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
Description60S ribosomal protein L27
Genome locationchr07:6086048..6086454
RNA-Seq ExpressionPI0015688
SyntenyPI0015688
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0022625 - cytosolic large ribosomal subunit (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR001141 - Ribosomal protein L27e
IPR008991 - Translation protein SH3-like domain superfamily
IPR018262 - Ribosomal protein L27e, conserved site
IPR038655 - Ribosomal protein L27e superfamily
IPR041991 - Eukaryotic Ribosomal Protein L27, KOW domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8649234.1 hypothetical protein Csa_014974 [Cucumis sativus]1.1e-5184.44Show/hide
Query:  MVKFLKPNKAVIVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSAKKTAKNPVSRPSL----------SSYTLDVDLKDVVTIDSL
        MVKFLKPNKAVIVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSAKKTAK    +  +          + YTLDVDLKDVVT+DSL
Subjt:  MVKFLKPNKAVIVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSAKKTAKNPVSRPSL----------SSYTLDVDLKDVVTIDSL

Query:  QSKDKKVTAAKETKKRFEERFKTGKNRWFFTKLRF
        QSKDKKVTAAKETKKRFEERFKTGKNRWFFTKLRF
Subjt:  QSKDKKVTAAKETKKRFEERFKTGKNRWFFTKLRF

XP_004147739.1 60S ribosomal protein L27 [Cucumis sativus]1.5e-5184.44Show/hide
Query:  MVKFLKPNKAVIVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSAKKTAKNPVSRPSL----------SSYTLDVDLKDVVTIDSL
        MVKFLKPNKAVIVLQGRYAGRKAVI+RAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSAKKTAK    +  +          + YTLDVDLKDVVTIDSL
Subjt:  MVKFLKPNKAVIVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSAKKTAKNPVSRPSL----------SSYTLDVDLKDVVTIDSL

Query:  QSKDKKVTAAKETKKRFEERFKTGKNRWFFTKLRF
        QSKDKKVTAAKETKKRFEERFKTGKNRWFFTKLRF
Subjt:  QSKDKKVTAAKETKKRFEERFKTGKNRWFFTKLRF

XP_004147740.1 60S ribosomal protein L27 [Cucumis sativus]1.1e-5184.44Show/hide
Query:  MVKFLKPNKAVIVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSAKKTAKNPVSRPSL----------SSYTLDVDLKDVVTIDSL
        MVKFLKPNKAVIVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSAKKTAK    +  +          + YTLDVDLKDVVT+DSL
Subjt:  MVKFLKPNKAVIVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSAKKTAKNPVSRPSL----------SSYTLDVDLKDVVTIDSL

Query:  QSKDKKVTAAKETKKRFEERFKTGKNRWFFTKLRF
        QSKDKKVTAAKETKKRFEERFKTGKNRWFFTKLRF
Subjt:  QSKDKKVTAAKETKKRFEERFKTGKNRWFFTKLRF

XP_008451849.1 PREDICTED: 60S ribosomal protein L27-like [Cucumis melo]2.5e-5184.44Show/hide
Query:  MVKFLKPNKAVIVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSAKKTAKNPVSRPSL----------SSYTLDVDLKDVVTIDSL
        MVKFLKPNKAVIVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSAKKTAK    +  +          + YTLDVDLKDVVTIDSL
Subjt:  MVKFLKPNKAVIVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSAKKTAKNPVSRPSL----------SSYTLDVDLKDVVTIDSL

Query:  QSKDKKVTAAKETKKRFEERFKTGKNRWFFTKLRF
        QSKDKKV+AAKETKKRFEERFKTGKNRWFFTKLRF
Subjt:  QSKDKKVTAAKETKKRFEERFKTGKNRWFFTKLRF

XP_038874427.1 60S ribosomal protein L27-2-like [Benincasa hispida]2.5e-5183.7Show/hide
Query:  MVKFLKPNKAVIVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSAKKTAKNPVSRPSL----------SSYTLDVDLKDVVTIDSL
        MVKFLKPNKAVI+LQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDS KKTAK    +P +          + YTLDVDLKDVVTIDSL
Subjt:  MVKFLKPNKAVIVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSAKKTAKNPVSRPSL----------SSYTLDVDLKDVVTIDSL

Query:  QSKDKKVTAAKETKKRFEERFKTGKNRWFFTKLRF
         SKDKKVTAAKETKKRFEERFKTGKNRWFFTKLRF
Subjt:  QSKDKKVTAAKETKKRFEERFKTGKNRWFFTKLRF

TrEMBL top hitse value%identityAlignment
A0A0A0KVB4 60S ribosomal protein L275.5e-5284.44Show/hide
Query:  MVKFLKPNKAVIVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSAKKTAKNPVSRPSL----------SSYTLDVDLKDVVTIDSL
        MVKFLKPNKAVIVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSAKKTAK    +  +          + YTLDVDLKDVVT+DSL
Subjt:  MVKFLKPNKAVIVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSAKKTAKNPVSRPSL----------SSYTLDVDLKDVVTIDSL

Query:  QSKDKKVTAAKETKKRFEERFKTGKNRWFFTKLRF
        QSKDKKVTAAKETKKRFEERFKTGKNRWFFTKLRF
Subjt:  QSKDKKVTAAKETKKRFEERFKTGKNRWFFTKLRF

A0A0A0KXF9 60S ribosomal protein L277.1e-5284.44Show/hide
Query:  MVKFLKPNKAVIVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSAKKTAKNPVSRPSL----------SSYTLDVDLKDVVTIDSL
        MVKFLKPNKAVIVLQGRYAGRKAVI+RAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSAKKTAK    +  +          + YTLDVDLKDVVTIDSL
Subjt:  MVKFLKPNKAVIVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSAKKTAKNPVSRPSL----------SSYTLDVDLKDVVTIDSL

Query:  QSKDKKVTAAKETKKRFEERFKTGKNRWFFTKLRF
        QSKDKKVTAAKETKKRFEERFKTGKNRWFFTKLRF
Subjt:  QSKDKKVTAAKETKKRFEERFKTGKNRWFFTKLRF

A0A1S3BSF6 60S ribosomal protein L272.1e-5183.7Show/hide
Query:  MVKFLKPNKAVIVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSAKKTAKNPVSRPSL----------SSYTLDVDLKDVVTIDSL
        MVKFLKPNKAVIVLQGRYAGRKAVI+RAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSAKKTAK    +  +          + YTLDVDLKDVVTIDSL
Subjt:  MVKFLKPNKAVIVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSAKKTAKNPVSRPSL----------SSYTLDVDLKDVVTIDSL

Query:  QSKDKKVTAAKETKKRFEERFKTGKNRWFFTKLRF
        QSKDKKV+AAKETKKRFEERFKTGKNRWFFTKLRF
Subjt:  QSKDKKVTAAKETKKRFEERFKTGKNRWFFTKLRF

A0A1S3BT89 60S ribosomal protein L271.2e-5184.44Show/hide
Query:  MVKFLKPNKAVIVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSAKKTAKNPVSRPSL----------SSYTLDVDLKDVVTIDSL
        MVKFLKPNKAVIVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSAKKTAK    +  +          + YTLDVDLKDVVTIDSL
Subjt:  MVKFLKPNKAVIVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSAKKTAKNPVSRPSL----------SSYTLDVDLKDVVTIDSL

Query:  QSKDKKVTAAKETKKRFEERFKTGKNRWFFTKLRF
        QSKDKKV+AAKETKKRFEERFKTGKNRWFFTKLRF
Subjt:  QSKDKKVTAAKETKKRFEERFKTGKNRWFFTKLRF

A0A5A7V5M7 60S ribosomal protein L271.2e-5184.44Show/hide
Query:  MVKFLKPNKAVIVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSAKKTAKNPVSRPSL----------SSYTLDVDLKDVVTIDSL
        MVKFLKPNKAVIVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSAKKTAK    +  +          + YTLDVDLKDVVTIDSL
Subjt:  MVKFLKPNKAVIVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSAKKTAKNPVSRPSL----------SSYTLDVDLKDVVTIDSL

Query:  QSKDKKVTAAKETKKRFEERFKTGKNRWFFTKLRF
        QSKDKKV+AAKETKKRFEERFKTGKNRWFFTKLRF
Subjt:  QSKDKKVTAAKETKKRFEERFKTGKNRWFFTKLRF

SwissProt top hitse value%identityAlignment
P41101 60S ribosomal protein L271.3e-3966.19Show/hide
Query:  MVKFLKPNKAVIVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSAKKTAKNPVSRPSL----------SSYTLDVDL----KDVVT
        M KFLKPNKAVI+LQG+YAGRKAVI+RAFD+GTRDR YGHCLVAGI +YP KVIRKDSAKK  K    +  +          + YTLD DL    KDVV 
Subjt:  MVKFLKPNKAVIVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSAKKTAKNPVSRPSL----------SSYTLDVDL----KDVVT

Query:  IDSLQSKDKKVTAAKETKKRFEERFKTGKNRWFFTKLRF
         D LQ++DKKVT A+ TK R  ERFKTGKNRWFFTKLRF
Subjt:  IDSLQSKDKKVTAAKETKKRFEERFKTGKNRWFFTKLRF

P51419 60S ribosomal protein L27-32.1e-4572.59Show/hide
Query:  MVKFLKPNKAVIVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSAKKTAKNP--------VSRPSL--SSYTLDVDLKDVVTIDSL
        MVKFLK NKAVI+LQGRYAG+KAVII++FDDG RDR YGHCLVAG+KKYP+KVIRKDSAKKTAK          V+   L  + YTLDVDLK+V T+D+L
Subjt:  MVKFLKPNKAVIVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSAKKTAKNP--------VSRPSL--SSYTLDVDLKDVVTIDSL

Query:  QSKDKKVTAAKETKKRFEERFKTGKNRWFFTKLRF
        QSKDKKV A KE K + EERFKTGKNRWFFTKLRF
Subjt:  QSKDKKVTAAKETKKRFEERFKTGKNRWFFTKLRF

Q05462 60S ribosomal protein L277.4e-4671.85Show/hide
Query:  MVKFLKPNKAVIVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSAKKTAKNPVSRPSL----------SSYTLDVDLKDVVTIDSL
        MVKFLKPNKAVI+LQGRYAG+KAVI++ FDDGTR++ YGHCLVAGIKK+P+KVI+KDSAKKTAK    +  +          + YTLDVDLKD V  D L
Subjt:  MVKFLKPNKAVIVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSAKKTAKNPVSRPSL----------SSYTLDVDLKDVVTIDSL

Query:  QSKDKKVTAAKETKKRFEERFKTGKNRWFFTKLRF
        QSKDKKVTA KETKK  EERFKTGKNRWFFTKLRF
Subjt:  QSKDKKVTAAKETKKRFEERFKTGKNRWFFTKLRF

Q8LCL3 60S ribosomal protein L27-22.1e-4572.59Show/hide
Query:  MVKFLKPNKAVIVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSAKKTAKNP--------VSRPSL--SSYTLDVDLKDVVTIDSL
        MVKFLK NKAVI+LQGRYAG+KAVII++FDDGT DR YGHCLVAG+KKYP+KVIRKDSAKKTAK          V+   L  + YTLDVDLK+V T+D+L
Subjt:  MVKFLKPNKAVIVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSAKKTAKNP--------VSRPSL--SSYTLDVDLKDVVTIDSL

Query:  QSKDKKVTAAKETKKRFEERFKTGKNRWFFTKLRF
        +SKDKKVTA KE K + EERFKTGKNRWFFTKLRF
Subjt:  QSKDKKVTAAKETKKRFEERFKTGKNRWFFTKLRF

Q9SKX8 60S ribosomal protein L27-12.9e-4265.93Show/hide
Query:  MVKFLKPNKAVIVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSAKKTAKNP----------VSRPSLSSYTLDVDLKDVVTIDSL
        MVK +KP KAVI+LQGRY G+KAVI+++FDDGT ++ YGHCLVAG+KKYP+KVIRKDSAKKTAK                  + YTLD+DLK+VV+ D++
Subjt:  MVKFLKPNKAVIVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSAKKTAKNP----------VSRPSLSSYTLDVDLKDVVTIDSL

Query:  QSKDKKVTAAKETKKRFEERFKTGKNRWFFTKLRF
         SKDKKVTA KE K +FEERFKTGKNRWFFTKLRF
Subjt:  QSKDKKVTAAKETKKRFEERFKTGKNRWFFTKLRF

Arabidopsis top hitse value%identityAlignment
AT2G32220.1 Ribosomal L27e protein family2.1e-4365.93Show/hide
Query:  MVKFLKPNKAVIVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSAKKTAKNP----------VSRPSLSSYTLDVDLKDVVTIDSL
        MVK +KP KAVI+LQGRY G+KAVI+++FDDGT ++ YGHCLVAG+KKYP+KVIRKDSAKKTAK                  + YTLD+DLK+VV+ D++
Subjt:  MVKFLKPNKAVIVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSAKKTAKNP----------VSRPSLSSYTLDVDLKDVVTIDSL

Query:  QSKDKKVTAAKETKKRFEERFKTGKNRWFFTKLRF
         SKDKKVTA KE K +FEERFKTGKNRWFFTKLRF
Subjt:  QSKDKKVTAAKETKKRFEERFKTGKNRWFFTKLRF

AT3G22230.1 Ribosomal L27e protein family1.5e-4672.59Show/hide
Query:  MVKFLKPNKAVIVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSAKKTAKNP--------VSRPSL--SSYTLDVDLKDVVTIDSL
        MVKFLK NKAVI+LQGRYAG+KAVII++FDDGT DR YGHCLVAG+KKYP+KVIRKDSAKKTAK          V+   L  + YTLDVDLK+V T+D+L
Subjt:  MVKFLKPNKAVIVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSAKKTAKNP--------VSRPSL--SSYTLDVDLKDVVTIDSL

Query:  QSKDKKVTAAKETKKRFEERFKTGKNRWFFTKLRF
        +SKDKKVTA KE K + EERFKTGKNRWFFTKLRF
Subjt:  QSKDKKVTAAKETKKRFEERFKTGKNRWFFTKLRF

AT4G15000.1 Ribosomal L27e protein family1.5e-4672.59Show/hide
Query:  MVKFLKPNKAVIVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSAKKTAKNP--------VSRPSL--SSYTLDVDLKDVVTIDSL
        MVKFLK NKAVI+LQGRYAG+KAVII++FDDG RDR YGHCLVAG+KKYP+KVIRKDSAKKTAK          V+   L  + YTLDVDLK+V T+D+L
Subjt:  MVKFLKPNKAVIVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSAKKTAKNP--------VSRPSL--SSYTLDVDLKDVVTIDSL

Query:  QSKDKKVTAAKETKKRFEERFKTGKNRWFFTKLRF
        QSKDKKV A KE K + EERFKTGKNRWFFTKLRF
Subjt:  QSKDKKVTAAKETKKRFEERFKTGKNRWFFTKLRF

AT4G15000.2 Ribosomal L27e protein family6.9e-3969.92Show/hide
Query:  MVKFLKPNKAVIVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSAKKTAKNP--------VSRPSL--SSYTLDVDLKDVVTIDSL
        MVKFLK NKAVI+LQGRYAG+KAVII++FDDG RDR YGHCLVAG+KKYP+KVIRKDSAKKTAK          V+   L  + YTLDVDLK+V T+D+L
Subjt:  MVKFLKPNKAVIVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSAKKTAKNP--------VSRPSL--SSYTLDVDLKDVVTIDSL

Query:  QSKDKKVTAAKETKKRFEERFKT
        QSKDKKV A KE K + EERFKT
Subjt:  QSKDKKVTAAKETKKRFEERFKT


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTGAAGTTCCTCAAGCCTAACAAAGCCGTCATCGTCCTTCAAGGCCGTTACGCCGGCCGGAAGGCGGTCATCATTCGCGCCTTCGACGATGGAACTCGGGATCGTGC
TTATGGCCACTGCTTAGTTGCTGGAATCAAGAAGTACCCAGCTAAAGTCATCCGCAAGGACTCCGCCAAGAAGACCGCTAAAAATCCCGTGTCAAGGCCTTCATTAAGCT
CGTACACTCTCGATGTCGATCTTAAAGACGTTGTCACTATCGATTCGTTGCAGTCAAAGGACAAGAAGGTCACCGCCGCCAAAGAGACCAAGAAGAGGTTCGAGGAAAGG
TTCAAAACCGGAAAGAACAGGTGGTTTTTCACCAAGCTCAGGTTCTGA
mRNA sequenceShow/hide mRNA sequence
ATGGTGAAGTTCCTCAAGCCTAACAAAGCCGTCATCGTCCTTCAAGGCCGTTACGCCGGCCGGAAGGCGGTCATCATTCGCGCCTTCGACGATGGAACTCGGGATCGTGC
TTATGGCCACTGCTTAGTTGCTGGAATCAAGAAGTACCCAGCTAAAGTCATCCGCAAGGACTCCGCCAAGAAGACCGCTAAAAATCCCGTGTCAAGGCCTTCATTAAGCT
CGTACACTCTCGATGTCGATCTTAAAGACGTTGTCACTATCGATTCGTTGCAGTCAAAGGACAAGAAGGTCACCGCCGCCAAAGAGACCAAGAAGAGGTTCGAGGAAAGG
TTCAAAACCGGAAAGAACAGGTGGTTTTTCACCAAGCTCAGGTTCTGA
Protein sequenceShow/hide protein sequence
MVKFLKPNKAVIVLQGRYAGRKAVIIRAFDDGTRDRAYGHCLVAGIKKYPAKVIRKDSAKKTAKNPVSRPSLSSYTLDVDLKDVVTIDSLQSKDKKVTAAKETKKRFEER
FKTGKNRWFFTKLRF