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PI0015738 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0015738
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
Descriptiontransformer-2 protein homolog alpha-like
Genome locationchr10:21042466..21043496
RNA-Seq ExpressionPI0015738
SyntenyPI0015738
Gene Ontology termsGO:0036297 - interstrand cross-link repair (biological process)
GO:0005634 - nucleus (cellular component)
GO:0008409 - 5'-3' exonuclease activity (molecular function)
GO:0017108 - 5'-flap endonuclease activity (molecular function)
GO:0070336 - flap-structured DNA binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KGN52709.2 hypothetical protein Csa_008507 [Cucumis sativus]1.6e-1960.95Show/hide
Query:  MGRR--EMAFILIILYSYMVVSFALKQLFTIDSKYQLIRRNYDNISLTVVEHRRGGRGIVPIY-AAASSRRRGKH-HNCGNRHNNYVEFIVVEVFISIAI
        MGRR  EMAFIL+IL S M+ SFA  QLFTIDSK  +  R ++N     VE R GGRG++PIY A ASS R GKH H+ GNR NNY+EFI++ V ISIA+
Subjt:  MGRR--EMAFILIILYSYMVVSFALKQLFTIDSKYQLIRRNYDNISLTVVEHRRGGRGIVPIY-AAASSRRRGKH-HNCGNRHNNYVEFIVVEVFISIAI

Query:  LCRLI
        LCR I
Subjt:  LCRLI
TrEMBL top hitse value%identityAlignment
A0A0A0KTE6 Uncharacterized protein4.3e-1558.62Show/hide
Query:  MVVSFALKQLFTIDSKYQLIRRNYDNISLTVVEHRRGGRGIVPIY-AAASSRRRGKH-HNCGNRHNNYVEFIVVEVFISIAILCRLI
        M+ SFA  QLFTIDSK  +  R ++N     VE R GGRG++PIY A ASS R GKH H+ GNR NNY+EFI++ V ISIA+LCR I
Subjt:  MVVSFALKQLFTIDSKYQLIRRNYDNISLTVVEHRRGGRGIVPIY-AAASSRRRGKH-HNCGNRHNNYVEFIVVEVFISIAILCRLI
A0A1S3BFU5 transformer-2 protein homolog alpha-like7.6e-0438.79Show/hide
Query:  MGRR----EMAFILIILYSYMVVSFALKQLFTIDS-KYQLIRRNYDNISLTVVEHRRGGRGIVPIYAAASSRRRGKHHNCGNR----------HNNYVEF
        MGRR    E+A ILI++YS MV SFA KQLF  DS K+Q       +     +E R G    +PI+    +R  G+    G R            NY++F
Subjt:  MGRR----EMAFILIILYSYMVVSFALKQLFTIDS-KYQLIRRNYDNISLTVVEHRRGGRGIVPIYAAASSRRRGKHHNCGNR----------HNNYVEF

Query:  IVVEVFISIAILCRLI
        I   V IS+A LC LI
Subjt:  IVVEVFISIAILCRLI
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGAAGAAGAGAAATGGCATTCATTTTGATTATTCTTTATTCATATATGGTGGTTTCCTTTGCTTTGAAACAACTCTTCACAATAGATTCTAAATACCAACTTATTAG
GAGAAACTACGACAACATAAGTTTAACCGTTGTTGAACATCGACGAGGAGGTAGGGGCATCGTCCCAATTTATGCAGCAGCTTCTTCACGTCGTCGTGGAAAACACCACA
ACTGTGGAAACCGTCATAATAACTACGTCGAGTTTATAGTAGTTGAAGTTTTCATCTCTATTGCAATTTTGTGTAGACTTATATAA
mRNA sequenceShow/hide mRNA sequence
ATTAGTTTCATTAACGGATCAGAGTGAATAATAGAGAAAGAAAAATGGGAAGAAGAGAAATGGCATTCATTTTGATTATTCTTTATTCATATATGGTGGTTTCCTTTGCT
TTGAAACAACTCTTCACAATAGATTCTAAATACCAACTTATTAGGAGAAACTACGACAACATAAGTTTAACCGTTGTTGAACATCGACGAGGAGGTAGGGGCATCGTCCC
AATTTATGCAGCAGCTTCTTCACGTCGTCGTGGAAAACACCACAACTGTGGAAACCGTCATAATAACTACGTCGAGTTTATAGTAGTTGAAGTTTTCATCTCTATTGCAA
TTTTGTGTAGACTTATATAATACCAAATACATTTCAGTTCATCAATAAAGAATGTAACATTAAATTTTTTTCCCATAAAAA
Protein sequenceShow/hide protein sequence
MGRREMAFILIILYSYMVVSFALKQLFTIDSKYQLIRRNYDNISLTVVEHRRGGRGIVPIYAAASSRRRGKHHNCGNRHNNYVEFIVVEVFISIAILCRLI