; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

PI0015751 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0015751
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRRM domain-containing protein
Genome locationchr04:336910..339491
RNA-Seq ExpressionPI0015751
SyntenyPI0015751
Gene Ontology termsGO:0000398 - mRNA splicing, via spliceosome (biological process)
GO:0016607 - nuclear speck (cellular component)
GO:0003723 - RNA binding (molecular function)
InterPro domainsIPR000504 - RNA recognition motif domain
IPR012677 - Nucleotide-binding alpha-beta plait domain superfamily
IPR035979 - RNA-binding domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004134540.1 glycine-rich RNA-binding protein 4, mitochondrial [Cucumis sativus]2.0e-7488.61Show/hide
Query:  MWAATVSFPSISNLRGPIFPNNRLDASNRLSLNLRASFFDYPLASRLMVRNLPYSTNESRLQEEFSNFGEIAEVLLAKDQTTKRPKGYAFIQYTCQDDAM
        MWA TVSFPS+SNLRGPIFPNNRL ASNR+SLNLRASFFDYPLASRLMVRNLPYSTNESRLQEEFSNFGEIAEVLLAKD++TKRPKGYAFIQYTCQDDAM
Subjt:  MWAATVSFPSISNLRGPIFPNNRLDASNRLSLNLRASFFDYPLASRLMVRNLPYSTNESRLQEEFSNFGEIAEVLLAKDQTTKRPKGYAFIQYTCQDDAM

Query:  LALENMDCKKFDGRMIYVEIAKPGSGSFRGYPKTSGPPKERP----IVEQEDVADCWY
        LALE MDCK FDGRMIYVEIA PGSGSF GYP+ SGPPKERP     V+QEDVADCWY
Subjt:  LALENMDCKKFDGRMIYVEIAKPGSGSFRGYPKTSGPPKERP----IVEQEDVADCWY

XP_008439484.1 PREDICTED: glycine-rich RNA-binding protein 4, mitochondrial [Cucumis melo]1.4e-7590.91Show/hide
Query:  MWAATVSFPSISNLRGPIFPNNRLDASNRLSLNLRASFFDYPLASRLMVRNLPYSTNESRLQEEFSNFGEIAEVLLAKDQTTKRPKGYAFIQYTCQDDAM
        MWA TVS PSISNLRGP+FPNN L ASNR SLNLRASFFDYPLASRLMVRNLPYSTNESRLQEEFSNFGEIAEVLLAKD++TKRPKGYAFIQYTCQDDAM
Subjt:  MWAATVSFPSISNLRGPIFPNNRLDASNRLSLNLRASFFDYPLASRLMVRNLPYSTNESRLQEEFSNFGEIAEVLLAKDQTTKRPKGYAFIQYTCQDDAM

Query:  LALENMDCKKFDGRMIYVEIAKPGSGSFRGYPKTSGPPKERPIVEQEDVADCWY
        LALENMDCK FDGR IYVEIAKPGSGSF GYP+TSGPPKERP VEQED+ADCWY
Subjt:  LALENMDCKKFDGRMIYVEIAKPGSGSFRGYPKTSGPPKERPIVEQEDVADCWY

XP_022926008.1 small RNA-binding protein 11, chloroplastic [Cucurbita moschata]1.9e-6985.9Show/hide
Query:  MWAATVSFPSISNLRGPIFPNNRLDASNRLSLNLRASFFDYPLASRLMVRNLPYSTNESRLQEEFSNFGEIAEVLLAKDQTTKRPKGYAFIQYTCQDDAM
        MWAATVSFPS+SNLRGPI  +NRLD+S R SLNLRASF DYPLASRLMVRNLPYSTNE+RLQEEFSNFGEIAEVLLAKD+ TK PKGYAFIQYT QDDAM
Subjt:  MWAATVSFPSISNLRGPIFPNNRLDASNRLSLNLRASFFDYPLASRLMVRNLPYSTNESRLQEEFSNFGEIAEVLLAKDQTTKRPKGYAFIQYTCQDDAM

Query:  LALENMDCKKFDGRMIYVEIAKPGSGSFRGYPKTSGPPKERPI--VEQEDVADCWY
        LALENMDCKKFDGR IYVE+AKPGSGSFRGYP TSGPPKERPI  +  E+VADCWY
Subjt:  LALENMDCKKFDGRMIYVEIAKPGSGSFRGYPKTSGPPKERPI--VEQEDVADCWY

XP_022977992.1 small RNA-binding protein 11, chloroplastic [Cucurbita maxima]3.3e-6985.9Show/hide
Query:  MWAATVSFPSISNLRGPIFPNNRLDASNRLSLNLRASFFDYPLASRLMVRNLPYSTNESRLQEEFSNFGEIAEVLLAKDQTTKRPKGYAFIQYTCQDDAM
        MWAATVSFPS+SNLRGPI  NNRLD+S R SLNLRASF DYPLASRLMVRNLPYSTNE+RLQEEFSNFGEIAEVLLAKD+ TK PKGYAFIQYT QDDAM
Subjt:  MWAATVSFPSISNLRGPIFPNNRLDASNRLSLNLRASFFDYPLASRLMVRNLPYSTNESRLQEEFSNFGEIAEVLLAKDQTTKRPKGYAFIQYTCQDDAM

Query:  LALENMDCKKFDGRMIYVEIAKPGSGSFRGYPKTSGPPKERPI--VEQEDVADCWY
        LALENMDCKKFDGR IYVE+AKPGSGSF GYP TSGPPKERPI  +  E+VADCWY
Subjt:  LALENMDCKKFDGRMIYVEIAKPGSGSFRGYPKTSGPPKERPI--VEQEDVADCWY

XP_023543104.1 small RNA-binding protein 11, chloroplastic [Cucurbita pepo subsp. pepo]5.1e-7086.54Show/hide
Query:  MWAATVSFPSISNLRGPIFPNNRLDASNRLSLNLRASFFDYPLASRLMVRNLPYSTNESRLQEEFSNFGEIAEVLLAKDQTTKRPKGYAFIQYTCQDDAM
        MWAATVSFPS+SNLRGPI  NNRLD+S R SLNLRASF DYPLASRLMVRNLPYSTNE+RLQEEFSNFGEIAEVLLAKD+ TK PKGYAFIQYT QDDAM
Subjt:  MWAATVSFPSISNLRGPIFPNNRLDASNRLSLNLRASFFDYPLASRLMVRNLPYSTNESRLQEEFSNFGEIAEVLLAKDQTTKRPKGYAFIQYTCQDDAM

Query:  LALENMDCKKFDGRMIYVEIAKPGSGSFRGYPKTSGPPKERPI--VEQEDVADCWY
        LALENMDCKKFDGR IYVE+AKPGSGSFRGYP TSGPPKERPI  +  E+VADCWY
Subjt:  LALENMDCKKFDGRMIYVEIAKPGSGSFRGYPKTSGPPKERPI--VEQEDVADCWY

TrEMBL top hitse value%identityAlignment
A0A0A0KL21 RRM domain-containing protein9.7e-7588.61Show/hide
Query:  MWAATVSFPSISNLRGPIFPNNRLDASNRLSLNLRASFFDYPLASRLMVRNLPYSTNESRLQEEFSNFGEIAEVLLAKDQTTKRPKGYAFIQYTCQDDAM
        MWA TVSFPS+SNLRGPIFPNNRL ASNR+SLNLRASFFDYPLASRLMVRNLPYSTNESRLQEEFSNFGEIAEVLLAKD++TKRPKGYAFIQYTCQDDAM
Subjt:  MWAATVSFPSISNLRGPIFPNNRLDASNRLSLNLRASFFDYPLASRLMVRNLPYSTNESRLQEEFSNFGEIAEVLLAKDQTTKRPKGYAFIQYTCQDDAM

Query:  LALENMDCKKFDGRMIYVEIAKPGSGSFRGYPKTSGPPKERP----IVEQEDVADCWY
        LALE MDCK FDGRMIYVEIA PGSGSF GYP+ SGPPKERP     V+QEDVADCWY
Subjt:  LALENMDCKKFDGRMIYVEIAKPGSGSFRGYPKTSGPPKERP----IVEQEDVADCWY

A0A1S3AYG0 glycine-rich RNA-binding protein 4, mitochondrial6.7e-7690.91Show/hide
Query:  MWAATVSFPSISNLRGPIFPNNRLDASNRLSLNLRASFFDYPLASRLMVRNLPYSTNESRLQEEFSNFGEIAEVLLAKDQTTKRPKGYAFIQYTCQDDAM
        MWA TVS PSISNLRGP+FPNN L ASNR SLNLRASFFDYPLASRLMVRNLPYSTNESRLQEEFSNFGEIAEVLLAKD++TKRPKGYAFIQYTCQDDAM
Subjt:  MWAATVSFPSISNLRGPIFPNNRLDASNRLSLNLRASFFDYPLASRLMVRNLPYSTNESRLQEEFSNFGEIAEVLLAKDQTTKRPKGYAFIQYTCQDDAM

Query:  LALENMDCKKFDGRMIYVEIAKPGSGSFRGYPKTSGPPKERPIVEQEDVADCWY
        LALENMDCK FDGR IYVEIAKPGSGSF GYP+TSGPPKERP VEQED+ADCWY
Subjt:  LALENMDCKKFDGRMIYVEIAKPGSGSFRGYPKTSGPPKERPIVEQEDVADCWY

A0A6J1CXC0 glycine-rich RNA-binding protein 4, mitochondrial2.9e-6377.27Show/hide
Query:  MWAATVSFPSISNLRGPIFPNNRLDASNRLSLNLRASFFDYPLASRLMVRNLPYSTNESRLQEEFSNFGEIAEVLLAKDQTTKRPKGYAFIQYTCQDDAM
        MWA+TVSFP + N R PI  +N    + R SLNLRASFFDYPLASR+MVRNLPYST+E RLQEEFS+FGE+AEVLLAKD+ TKRP+GYAFIQYTCQDDAM
Subjt:  MWAATVSFPSISNLRGPIFPNNRLDASNRLSLNLRASFFDYPLASRLMVRNLPYSTNESRLQEEFSNFGEIAEVLLAKDQTTKRPKGYAFIQYTCQDDAM

Query:  LALENMDCKKFDGRMIYVEIAKPGSGSFRGYPKTSGPPKERPIVEQEDVADCWY
        LALENMD KKFDGR IYVE+A+PGS SF GYP+TSGPPKERP +E E+VADCWY
Subjt:  LALENMDCKKFDGRMIYVEIAKPGSGSFRGYPKTSGPPKERPIVEQEDVADCWY

A0A6J1EGU7 small RNA-binding protein 11, chloroplastic9.4e-7085.9Show/hide
Query:  MWAATVSFPSISNLRGPIFPNNRLDASNRLSLNLRASFFDYPLASRLMVRNLPYSTNESRLQEEFSNFGEIAEVLLAKDQTTKRPKGYAFIQYTCQDDAM
        MWAATVSFPS+SNLRGPI  +NRLD+S R SLNLRASF DYPLASRLMVRNLPYSTNE+RLQEEFSNFGEIAEVLLAKD+ TK PKGYAFIQYT QDDAM
Subjt:  MWAATVSFPSISNLRGPIFPNNRLDASNRLSLNLRASFFDYPLASRLMVRNLPYSTNESRLQEEFSNFGEIAEVLLAKDQTTKRPKGYAFIQYTCQDDAM

Query:  LALENMDCKKFDGRMIYVEIAKPGSGSFRGYPKTSGPPKERPI--VEQEDVADCWY
        LALENMDCKKFDGR IYVE+AKPGSGSFRGYP TSGPPKERPI  +  E+VADCWY
Subjt:  LALENMDCKKFDGRMIYVEIAKPGSGSFRGYPKTSGPPKERPI--VEQEDVADCWY

A0A6J1IJY1 small RNA-binding protein 11, chloroplastic1.6e-6985.9Show/hide
Query:  MWAATVSFPSISNLRGPIFPNNRLDASNRLSLNLRASFFDYPLASRLMVRNLPYSTNESRLQEEFSNFGEIAEVLLAKDQTTKRPKGYAFIQYTCQDDAM
        MWAATVSFPS+SNLRGPI  NNRLD+S R SLNLRASF DYPLASRLMVRNLPYSTNE+RLQEEFSNFGEIAEVLLAKD+ TK PKGYAFIQYT QDDAM
Subjt:  MWAATVSFPSISNLRGPIFPNNRLDASNRLSLNLRASFFDYPLASRLMVRNLPYSTNESRLQEEFSNFGEIAEVLLAKDQTTKRPKGYAFIQYTCQDDAM

Query:  LALENMDCKKFDGRMIYVEIAKPGSGSFRGYPKTSGPPKERPI--VEQEDVADCWY
        LALENMDCKKFDGR IYVE+AKPGSGSF GYP TSGPPKERPI  +  E+VADCWY
Subjt:  LALENMDCKKFDGRMIYVEIAKPGSGSFRGYPKTSGPPKERPI--VEQEDVADCWY

SwissProt top hitse value%identityAlignment
Q4WJT7 Multiple RNA-binding domain-containing protein 13.8e-1244.74Show/hide
Query:  LASRLMVRNLPYSTNESRLQEEFSNFGEIAEVLLAKDQTTKRPKGYAFIQYTCQDDAMLALENMDCKKFDGRMIYV
        L+SRL VRNLPY  +ES L+  FS FG+I E+ +A D  +   KG+A++QY   D A+ A + +D K F GR++++
Subjt:  LASRLMVRNLPYSTNESRLQEEFSNFGEIAEVLLAKDQTTKRPKGYAFIQYTCQDDAMLALENMDCKKFDGRMIYV

Q54PB2 Multiple RNA-binding domain-containing protein 12.9e-1246.67Show/hide
Query:  ASRLMVRNLPYSTNESRLQEEFSNFGEIAEVLLAKDQTTKRPKGYAFIQYTCQDDAMLALENMDCKKFDGRMIYV
        + R+ VRNL YST E  L++ FS FG+I+E+ +  D  +K+ KG AFI Y   ++A+ AL +MD K F GR+I+V
Subjt:  ASRLMVRNLPYSTNESRLQEEFSNFGEIAEVLLAKDQTTKRPKGYAFIQYTCQDDAMLALENMDCKKFDGRMIYV

Q9DED4 Cold-inducible RNA-binding protein B2.9e-1241.18Show/hide
Query:  RLMVRNLPYSTNESRLQEEFSNFGEIAEVLLAKDQTTKRPKGYAFIQYTCQDDAMLALENMDCKKFDGRMIYVEIAKPGSGSFRG
        +L +  L + TNE  L++ FS +G+I+EV++ KD+ TKR +G+ F+ +   DDA  A+  M+ K  DGR I V+ A   SG  RG
Subjt:  RLMVRNLPYSTNESRLQEEFSNFGEIAEVLLAKDQTTKRPKGYAFIQYTCQDDAMLALENMDCKKFDGRMIYVEIAKPGSGSFRG

Q9FX45 Organelle RRM domain-containing protein 6, chloroplastic7.8e-1336.36Show/hide
Query:  SRLMVRNLPYSTNESRLQEEFSNFGEIAEVLLAKDQTTKRPKGYAFIQYTCQDDAMLALENMDCKKFDGRMIYVEIAKPGSGSFRGYPKTSGP-PKERP
        ++L V  L + T E  L++ F  FG +  + +  D+   RPKG+AF++Y  +++AM A++ M  K  DGR+I+VE AK  S   R  P+   P P+ +P
Subjt:  SRLMVRNLPYSTNESRLQEEFSNFGEIAEVLLAKDQTTKRPKGYAFIQYTCQDDAMLALENMDCKKFDGRMIYVEIAKPGSGSFRGYPKTSGP-PKERP

Q9LIS2 Glycine-rich RNA-binding protein 4, mitochondrial8.6e-1235.63Show/hide
Query:  LASRLMVRNLPYSTNESRLQEEFSNFGEIAEVLLAKDQTTKRPKGYAFIQYTCQDDAMLALENMDCKKFDGRMIYVEIAKPGSGSFR
        ++S+L V  L + T++S L++ F++FGE+ E  +  D+ T R +G+ F+ ++C+D A  A++ MD K+ +GR I V +A   S + R
Subjt:  LASRLMVRNLPYSTNESRLQEEFSNFGEIAEVLLAKDQTTKRPKGYAFIQYTCQDDAMLALENMDCKKFDGRMIYVEIAKPGSGSFR

Arabidopsis top hitse value%identityAlignment
AT1G73530.1 RNA-binding (RRM/RBD/RNP motifs) family protein5.5e-1436.36Show/hide
Query:  SRLMVRNLPYSTNESRLQEEFSNFGEIAEVLLAKDQTTKRPKGYAFIQYTCQDDAMLALENMDCKKFDGRMIYVEIAKPGSGSFRGYPKTSGP-PKERP
        ++L V  L + T E  L++ F  FG +  + +  D+   RPKG+AF++Y  +++AM A++ M  K  DGR+I+VE AK  S   R  P+   P P+ +P
Subjt:  SRLMVRNLPYSTNESRLQEEFSNFGEIAEVLLAKDQTTKRPKGYAFIQYTCQDDAMLALENMDCKKFDGRMIYVEIAKPGSGSFRGYPKTSGP-PKERP

AT3G46020.1 RNA-binding (RRM/RBD/RNP motifs) family protein3.2e-1443.75Show/hide
Query:  LASRLMVRNLPYSTNESRLQEEFSNFGEIAEVLLAKDQTTKRPKGYAFIQYTCQDDAMLALENMDCKKFDGRMIYVEIAK
        ++++L V  L   T +  L++ FS FG+I E  L +D  T+RPKG+ FI +  +DDA  AL+++D K  DGR+I+VE+AK
Subjt:  LASRLMVRNLPYSTNESRLQEEFSNFGEIAEVLLAKDQTTKRPKGYAFIQYTCQDDAMLALENMDCKKFDGRMIYVEIAK

AT4G19610.1 nucleotide binding;nucleic acid binding;RNA binding5.0e-1543.62Show/hide
Query:  RLMVRNLPYSTNESRLQEEFSNFGEIAEVLLAKDQTTKRPKGYAFIQYTCQDDAMLALENMDCKKFDGRMIYVEIAKPGSGSFRGYPKTSGPPK
        RL VRNLPY+  E  L E FS FG+I+EV L  D+ TKR +G A+I Y   + A  A+E +D   F GR++++  AK    S +    TS  PK
Subjt:  RLMVRNLPYSTNESRLQEEFSNFGEIAEVLLAKDQTTKRPKGYAFIQYTCQDDAMLALENMDCKKFDGRMIYVEIAKPGSGSFRGYPKTSGPPK

AT4G20030.1 RNA-binding (RRM/RBD/RNP motifs) family protein1.5e-4355.41Show/hide
Query:  MWAATVSFPSISNLRGPIFPNNRLDASNRLSLNLRASFFDYPLASRLMVRNLPYSTNESRLQEEFSNFGEIAEVLLAKDQTTKRPKGYAFIQYTCQDDAM
        MW+AT+SFPS       + PN R    N     ++AS F+YPLAS++MVRNLP+ST+E  L+ EFS FGEIAEV L KD+  KR KGYAFIQ+T QDDA 
Subjt:  MWAATVSFPSISNLRGPIFPNNRLDASNRLSLNLRASFFDYPLASRLMVRNLPYSTNESRLQEEFSNFGEIAEVLLAKDQTTKRPKGYAFIQYTCQDDAM

Query:  LALENMDCKKFDGRMIYVEIAKPGSGSFRGYPKTSGPPKERPIVEQ---EDVADCWY
        LA+E MD + ++GRMIY++IAKPG   F+G P+TSGPP++    E+   ++VADCWY
Subjt:  LALENMDCKKFDGRMIYVEIAKPGSGSFRGYPKTSGPPKERPIVEQ---EDVADCWY

AT5G08695.1 RNA-binding (RRM/RBD/RNP motifs) family protein6.5e-1540.62Show/hide
Query:  ASRLMVRNLPYSTNESRLQEEFSNFGEIAEVLLAKDQTTKRPKGYAFIQYTCQDDAMLALENMDCKKFDGRMIYVEIAKPGSGSFRGYPKTSGPPK
        A RL V  LPYST E  L E FS FG+I+EV L  D+ T+  +G AF+ Y   + A +A++ +D   F GR +++  AKP + S +    +S  PK
Subjt:  ASRLMVRNLPYSTNESRLQEEFSNFGEIAEVLLAKDQTTKRPKGYAFIQYTCQDDAMLALENMDCKKFDGRMIYVEIAKPGSGSFRGYPKTSGPPK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTGGGCGGCCACCGTCTCTTTCCCTTCAATTTCAAATCTTCGGGGACCCATTTTTCCGAATAATCGACTTGACGCTTCCAATCGCCTATCTCTGAATCTTCGAGCTTC
TTTCTTTGATTATCCTCTTGCCAGTAGACTCATGGTTAGAAATTTACCATACTCCACCAATGAGAGTCGGCTGCAAGAAGAATTTTCGAATTTTGGTGAGATTGCTGAAG
TGTTATTAGCAAAAGATCAAACAACAAAAAGACCCAAAGGATACGCGTTTATTCAATACACGTGCCAAGACGATGCGATGCTTGCGCTGGAAAATATGGATTGCAAGAAA
TTTGATGGAAGGATGATCTATGTGGAAATTGCAAAACCTGGTAGTGGTTCCTTTAGAGGATATCCAAAAACCTCTGGACCCCCGAAAGAGCGGCCTATCGTGGAGCAAGA
AGATGTGGCAGATTGTTGGTATTGA
mRNA sequenceShow/hide mRNA sequence
ATTGTATTAGGTTCCATTTCACAAAATTTCACTAATTTTCAAGATATCTATATAATTTAACCTTGAAATTTTGTGAACGAAAATAAAATGCGATGTTTTACATTATTGTT
TGGATGAAAAATTAAAACTGTTCGGTGTTATGAAAATAAGAAACCGCGAATTCGGGTTTTGAGGTGCCATCCATCGAACGAACGAAGCTCCAGGGCGTGGACTGAGCAGA
TTTGGGCTCCAATATGTGGGCGGCCACCGTCTCTTTCCCTTCAATTTCAAATCTTCGGGGACCCATTTTTCCGAATAATCGACTTGACGCTTCCAATCGCCTATCTCTGA
ATCTTCGAGCTTCTTTCTTTGATTATCCTCTTGCCAGTAGACTCATGGTTAGAAATTTACCATACTCCACCAATGAGAGTCGGCTGCAAGAAGAATTTTCGAATTTTGGT
GAGATTGCTGAAGTGTTATTAGCAAAAGATCAAACAACAAAAAGACCCAAAGGATACGCGTTTATTCAATACACGTGCCAAGACGATGCGATGCTTGCGCTGGAAAATAT
GGATTGCAAGAAATTTGATGGAAGGATGATCTATGTGGAAATTGCAAAACCTGGTAGTGGTTCCTTTAGAGGATATCCAAAAACCTCTGGACCCCCGAAAGAGCGGCCTA
TCGTGGAGCAAGAAGATGTGGCAGATTGTTGGTATTGATCTTTTTCTTTTTGAGATGCACAATATTTATATGGGAAAGTGATGGCTTAACAGTTAATGAAAGTTGTGTCC
AATGAGATCTTGATCAATTTCAAAGAATCTGTGAGTGCTGAAGTGTTCGATGAGATGGATTCGTTACATTTATTTTCATAGTTACAAGCGTTAGATGCCGATAAGATTGT
GAAACTCTTCTCCTGTATTTTGTTATAGGAACAAAATATTTGTATTTGTAAATACACTGTTTATGACATTTTAATGCATCTCGCAGTGCATATTGCCTTTTGTAGTGTTG
CAATTCAAAATGGTGGAAAATGCGGAAATTCGTAATGCAAA
Protein sequenceShow/hide protein sequence
MWAATVSFPSISNLRGPIFPNNRLDASNRLSLNLRASFFDYPLASRLMVRNLPYSTNESRLQEEFSNFGEIAEVLLAKDQTTKRPKGYAFIQYTCQDDAMLALENMDCKK
FDGRMIYVEIAKPGSGSFRGYPKTSGPPKERPIVEQEDVADCWY