CuGenDBv2

Gene ID	PI0015790
Organism	Cucumis metuliferus PI 482460 (Melon (PI 482460) v1)
Description	Transposon Ty1-LR2 Gag-Pol polyprotein
Genome location	chr02:16858942..16859265
RNA-Seq Expression	PI0015790
Synteny	PI0015790
Gene Ontology terms	GO:0015074 - DNA integration (biological process) GO:0000166 - nucleotide binding (molecular function) GO:0003676 - nucleic acid binding (molecular function) GO:0008270 - zinc ion binding (molecular function) GO:0016772 - transferase activity, transferring phosphorus-containing groups (molecular function)
InterPro domains	IPR013103 - Reverse transcriptase, RNA-dependent DNA polymerase

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0047995.1 retrotransposon protein, putative, Ty1-copia sub-class [Cucumis melo var. makuwa]

2.2e-34

71.96

Show/hide

Query:  MDVTTTFLHGELDEVIYMGQSKGCEVKGKECMICHLHKSIYGLKQSLRQWY----------GFHRNSYDAHVYWQLSQECTHIYLLLFVDDMILVSKDYA
        MDVTTTFLHGEL+EVIYM Q KG EVKGKE M+C LHKS+YGLKQS RQWY          GFHRNSYDA VYW+ SQ+ T+IYLLL+VDDMILVSKDYA
Subjt:  MDVTTTFLHGELDEVIYMGQSKGCEVKGKECMICHLHKSIYGLKQSLRQWY----------GFHRNSYDAHVYWQLSQECTHIYLLLFVDDMILVSKDYA

Query:  ETCKLKR
          C+LK+
Subjt:  ETCKLKR

KAA0050719.1 putative gag-pol polyprotein [Cucumis melo var. makuwa]

1.3e-34

71.96

Show/hide

Query:  MDVTTTFLHGELDEVIYMGQSKGCEVKGKECMICHLHKSIYGLKQSLRQWY----------GFHRNSYDAHVYWQLSQECTHIYLLLFVDDMILVSKDYA
        MDVTT FLHGEL+EVIYM Q KG EVKGKE M+C LHKS+YGLKQS RQWY          GFHRNSYDA VYW+ SQ+ T+IYLLL+VDDMILVSKDYA
Subjt:  MDVTTTFLHGELDEVIYMGQSKGCEVKGKECMICHLHKSIYGLKQSLRQWY----------GFHRNSYDAHVYWQLSQECTHIYLLLFVDDMILVSKDYA

Query:  ETCKLKR
        E C+LK+
Subjt:  ETCKLKR

KAA0067243.1 retrotransposon protein, putative, Ty1-copia sub-class [Cucumis melo var. makuwa]

3.7e-34

71.96

Show/hide

Query:  MDVTTTFLHGELDEVIYMGQSKGCEVKGKECMICHLHKSIYGLKQSLRQWY----------GFHRNSYDAHVYWQLSQECTHIYLLLFVDDMILVSKDYA
        MDVTTTFLHGEL+EVIYM Q KG EVKGKE M+  LHKS+YGLKQS RQWY          GFHRNSYDA VYW+LSQ+ T+IYLLL+VDDMILVSKDY 
Subjt:  MDVTTTFLHGELDEVIYMGQSKGCEVKGKECMICHLHKSIYGLKQSLRQWY----------GFHRNSYDAHVYWQLSQECTHIYLLLFVDDMILVSKDYA

Query:  ETCKLKR
        E C+LK+
Subjt:  ETCKLKR

TYK13826.1 putative polyprotein [Cucumis melo var. makuwa]

1.3e-34

71.96

Show/hide

Query:  MDVTTTFLHGELDEVIYMGQSKGCEVKGKECMICHLHKSIYGLKQSLRQWY----------GFHRNSYDAHVYWQLSQECTHIYLLLFVDDMILVSKDYA
        MDVTT FLHGEL+EVIYM Q KG EVKGKE M+C LHKS+YGLKQS RQWY          GFHRNSYDA VYW+ SQ+ T+IYLLL+VDDMILVSKDYA
Subjt:  MDVTTTFLHGELDEVIYMGQSKGCEVKGKECMICHLHKSIYGLKQSLRQWY----------GFHRNSYDAHVYWQLSQECTHIYLLLFVDDMILVSKDYA

Query:  ETCKLKR
        E C+LK+
Subjt:  ETCKLKR

TYK25306.1 putative gag-pol polyprotein [Cucumis melo var. makuwa]

1.3e-34

71.96

Show/hide

Query:  MDVTTTFLHGELDEVIYMGQSKGCEVKGKECMICHLHKSIYGLKQSLRQWY----------GFHRNSYDAHVYWQLSQECTHIYLLLFVDDMILVSKDYA
        MDVTT FLHGEL+EVIYM Q KG EVKGKE M+C LHKS+YGLKQS RQWY          GFHRNSYDA VYW+ SQ+ T+IYLLL+VDDMILVSKDYA
Subjt:  MDVTTTFLHGELDEVIYMGQSKGCEVKGKECMICHLHKSIYGLKQSLRQWY----------GFHRNSYDAHVYWQLSQECTHIYLLLFVDDMILVSKDYA

Query:  ETCKLKR
        E C+LK+
Subjt:  ETCKLKR

TrEMBL top hits

e value

%identity

Alignment

A0A5A7U2U7 Retrotransposon protein, putative, Ty1-copia sub-class

1.0e-34

71.96

Show/hide

Query:  MDVTTTFLHGELDEVIYMGQSKGCEVKGKECMICHLHKSIYGLKQSLRQWY----------GFHRNSYDAHVYWQLSQECTHIYLLLFVDDMILVSKDYA
        MDVTTTFLHGEL+EVIYM Q KG EVKGKE M+C LHKS+YGLKQS RQWY          GFHRNSYDA VYW+ SQ+ T+IYLLL+VDDMILVSKDYA
Subjt:  MDVTTTFLHGELDEVIYMGQSKGCEVKGKECMICHLHKSIYGLKQSLRQWY----------GFHRNSYDAHVYWQLSQECTHIYLLLFVDDMILVSKDYA

Query:  ETCKLKR
          C+LK+
Subjt:  ETCKLKR

A0A5A7UB25 Putative gag-pol polyprotein

6.2e-35

71.96

Show/hide

Query:  MDVTTTFLHGELDEVIYMGQSKGCEVKGKECMICHLHKSIYGLKQSLRQWY----------GFHRNSYDAHVYWQLSQECTHIYLLLFVDDMILVSKDYA
        MDVTT FLHGEL+EVIYM Q KG EVKGKE M+C LHKS+YGLKQS RQWY          GFHRNSYDA VYW+ SQ+ T+IYLLL+VDDMILVSKDYA
Subjt:  MDVTTTFLHGELDEVIYMGQSKGCEVKGKECMICHLHKSIYGLKQSLRQWY----------GFHRNSYDAHVYWQLSQECTHIYLLLFVDDMILVSKDYA

Query:  ETCKLKR
        E C+LK+
Subjt:  ETCKLKR

A0A5A7VGM4 Retrotransposon protein, putative, Ty1-copia sub-class

1.8e-34

71.96

Show/hide

Query:  MDVTTTFLHGELDEVIYMGQSKGCEVKGKECMICHLHKSIYGLKQSLRQWY----------GFHRNSYDAHVYWQLSQECTHIYLLLFVDDMILVSKDYA
        MDVTTTFLHGEL+EVIYM Q KG EVKGKE M+  LHKS+YGLKQS RQWY          GFHRNSYDA VYW+LSQ+ T+IYLLL+VDDMILVSKDY 
Subjt:  MDVTTTFLHGELDEVIYMGQSKGCEVKGKECMICHLHKSIYGLKQSLRQWY----------GFHRNSYDAHVYWQLSQECTHIYLLLFVDDMILVSKDYA

Query:  ETCKLKR
        E C+LK+
Subjt:  ETCKLKR

A0A5D3CTV2 Putative polyprotein

6.2e-35

71.96

Show/hide

Query:  MDVTTTFLHGELDEVIYMGQSKGCEVKGKECMICHLHKSIYGLKQSLRQWY----------GFHRNSYDAHVYWQLSQECTHIYLLLFVDDMILVSKDYA
        MDVTT FLHGEL+EVIYM Q KG EVKGKE M+C LHKS+YGLKQS RQWY          GFHRNSYDA VYW+ SQ+ T+IYLLL+VDDMILVSKDYA
Subjt:  MDVTTTFLHGELDEVIYMGQSKGCEVKGKECMICHLHKSIYGLKQSLRQWY----------GFHRNSYDAHVYWQLSQECTHIYLLLFVDDMILVSKDYA

Query:  ETCKLKR
        E C+LK+
Subjt:  ETCKLKR

A0A5D3DNU1 Putative gag-pol polyprotein

6.2e-35

71.96

Show/hide

Query:  MDVTTTFLHGELDEVIYMGQSKGCEVKGKECMICHLHKSIYGLKQSLRQWY----------GFHRNSYDAHVYWQLSQECTHIYLLLFVDDMILVSKDYA
        MDVTT FLHGEL+EVIYM Q KG EVKGKE M+C LHKS+YGLKQS RQWY          GFHRNSYDA VYW+ SQ+ T+IYLLL+VDDMILVSKDYA
Subjt:  MDVTTTFLHGELDEVIYMGQSKGCEVKGKECMICHLHKSIYGLKQSLRQWY----------GFHRNSYDAHVYWQLSQECTHIYLLLFVDDMILVSKDYA

Query:  ETCKLKR
        E C+LK+
Subjt:  ETCKLKR

SwissProt top hits

e value

%identity

Alignment

P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-94

2.3e-18

47.17

Show/hide

Query:  MDVTTTFLHGELDEVIYMGQSKGCEVKGKECMICHLHKSIYGLKQSLRQWY----------GFHRNSYDAHVYWQLSQECTHIYLLLFVDDMILVSKDYA
        +DV T FLHG+L+E IYM Q +G EV GK+ M+C L+KS+YGLKQ+ RQWY           + +   D  VY++   E   I LLL+VDDM++V KD  
Subjt:  MDVTTTFLHGELDEVIYMGQSKGCEVKGKECMICHLHKSIYGLKQSLRQWY----------GFHRNSYDAHVYWQLSQECTHIYLLLFVDDMILVSKDYA

Query:  ETCKLK
           KLK
Subjt:  ETCKLK

P25384 Transposon Ty2-C Gag-Pol polyprotein

8.4e-05

31.91

Show/hide

Query:  MDVTTTFLHGELDEVIYMGQSKGCEVKGKECMICHLHKSIYGLKQSLRQWY----GFHRNSYDAHVY--WQLSQECTHIYLLLFVDDMILVSKD
        +D+++ +L+ ++ E +Y+       +  K   +  L KS+YGLKQS   WY     +  N  D      W    + + + + LFVDDMIL SKD
Subjt:  MDVTTTFLHGELDEVIYMGQSKGCEVKGKECMICHLHKSIYGLKQSLRQWY----GFHRNSYDAHVY--WQLSQECTHIYLLLFVDDMILVSKD

Q03494 Transposon Ty2-DR2 Gag-Pol polyprotein

8.4e-05

31.91

Show/hide

Query:  MDVTTTFLHGELDEVIYMGQSKGCEVKGKECMICHLHKSIYGLKQSLRQWY----GFHRNSYDAHVY--WQLSQECTHIYLLLFVDDMILVSKD
        +D+++ +L+ ++ E +Y+       +  K   +  L KS+YGLKQS   WY     +  N  D      W    + + + + LFVDDMIL SKD
Subjt:  MDVTTTFLHGELDEVIYMGQSKGCEVKGKECMICHLHKSIYGLKQSLRQWY----GFHRNSYDAHVY--WQLSQECTHIYLLLFVDDMILVSKD

Q12472 Transposon Ty2-DR1 Gag-Pol polyprotein

8.4e-05

31.91

Show/hide

Query:  MDVTTTFLHGELDEVIYMGQSKGCEVKGKECMICHLHKSIYGLKQSLRQWY----GFHRNSYDAHVY--WQLSQECTHIYLLLFVDDMILVSKD
        +D+++ +L+ ++ E +Y+       +  K   +  L KS+YGLKQS   WY     +  N  D      W    + + + + LFVDDMIL SKD
Subjt:  MDVTTTFLHGELDEVIYMGQSKGCEVKGKECMICHLHKSIYGLKQSLRQWY----GFHRNSYDAHVY--WQLSQECTHIYLLLFVDDMILVSKD

Q12491 Transposon Ty2-B Gag-Pol polyprotein

8.4e-05

31.91

Show/hide

Query:  MDVTTTFLHGELDEVIYMGQSKGCEVKGKECMICHLHKSIYGLKQSLRQWY----GFHRNSYDAHVY--WQLSQECTHIYLLLFVDDMILVSKD
        +D+++ +L+ ++ E +Y+       +  K   +  L KS+YGLKQS   WY     +  N  D      W    + + + + LFVDDMIL SKD
Subjt:  MDVTTTFLHGELDEVIYMGQSKGCEVKGKECMICHLHKSIYGLKQSLRQWY----GFHRNSYDAHVY--WQLSQECTHIYLLLFVDDMILVSKD

Arabidopsis top hits

e value

%identity

Alignment

AT4G23160.1 cysteine-rich RLK (RECEPTOR-like protein kinase) 8

1.4e-10

34.86

Show/hide

Query:  MDVTTTFLHGELDEVIYMGQSKGCEVKGKECM----ICHLHKSIYGLKQSLRQWY--------GF-HRNSYDAHVYWQLSQECTHIYLLLFVDDMILVSK
        +D++  FL+G+LDE IYM    G   +  + +    +C+L KSIYGLKQ+ RQW+        GF    S+  H Y+        + +L++VDD+I+ S 
Subjt:  MDVTTTFLHGELDEVIYMGQSKGCEVKGKECM----ICHLHKSIYGLKQSLRQWY--------GF-HRNSYDAHVYWQLSQECTHIYLLLFVDDMILVSK

Query:  DYAETCKLK
        + A   +LK
Subjt:  DYAETCKLK

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGGACGTCACCACAACATTCCTTCATGGAGAATTGGATGAAGTAATTTACATGGGTCAATCTAAGGGCTGTGAGGTGAAGGGTAAGGAATGCATGATTTGTCATCTTCA
CAAGTCCATCTATGGATTGAAGCAATCCCTAAGACAGTGGTATGGGTTTCACAGGAACTCATATGATGCCCATGTTTACTGGCAACTATCTCAGGAATGTACGCATATTT
ATCTGTTATTGTTTGTAGATGATATGATACTAGTGTCTAAGGATTATGCTGAAACCTGTAAACTCAAGAGATAG

mRNA sequence

Show/hide mRNA sequence

Protein sequence

Show/hide protein sequence

MDVTTTFLHGELDEVIYMGQSKGCEVKGKECMICHLHKSIYGLKQSLRQWYGFHRNSYDAHVYWQLSQECTHIYLLLFVDDMILVSKDYAETCKLKR

PI0015790 (gene) of Melon (PI 482460) v1 genome