CuGenDBv2

Gene ID	PI0015797
Organism	Cucumis metuliferus PI 482460 (Melon (PI 482460) v1)
Description	Retrotransposon protein
Genome location	chr03:23900295..23900510
RNA-Seq Expression	PI0015797
Synteny	PI0015797
Gene Ontology terms	GO:0046872 - metal ion binding (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0034843.1 retrotransposon protein [Cucumis melo var. makuwa]

6.3e-23

83.82

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Query:  LRTTSGLASTEVVDVEEMVVMFLHVLAHDVKNRMIQREFVQSGETISPHFNIVLLAVLRLHDELLKKP
        LRT +GL STEVVDVEEMV MFLH+LAHDVKNR+IQREF++SGETIS HFN+VLLAV+RLHDELLKKP
Subjt:  LRTTSGLASTEVVDVEEMVVMFLHVLAHDVKNRMIQREFVQSGETISPHFNIVLLAVLRLHDELLKKP

KAA0046727.1 retrotransposon protein [Cucumis melo var. makuwa]

6.3e-23

83.82

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Query:  LRTTSGLASTEVVDVEEMVVMFLHVLAHDVKNRMIQREFVQSGETISPHFNIVLLAVLRLHDELLKKP
        LRT +GL STEVVDVEEMV MFLH+LAHDVKNR+IQREF++SGETIS HFN+VLLAV+RLHDELLKKP
Subjt:  LRTTSGLASTEVVDVEEMVVMFLHVLAHDVKNRMIQREFVQSGETISPHFNIVLLAVLRLHDELLKKP

XP_008441953.1 PREDICTED: uncharacterized protein LOC103485952 [Cucumis melo]

6.3e-23

80.88

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Query:  LRTTSGLASTEVVDVEEMVVMFLHVLAHDVKNRMIQREFVQSGETISPHFNIVLLAVLRLHDELLKKP
        LRT++GL  TEV+DVEEMV MFLH+LAHDVKNRMIQ+EF +SGET+S HFNIVLLA+LRLHDELLKKP
Subjt:  LRTTSGLASTEVVDVEEMVVMFLHVLAHDVKNRMIQREFVQSGETISPHFNIVLLAVLRLHDELLKKP

XP_008455792.1 PREDICTED: putative nuclease HARBI1 [Cucumis melo]

4.8e-23

83.82

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Query:  LRTTSGLASTEVVDVEEMVVMFLHVLAHDVKNRMIQREFVQSGETISPHFNIVLLAVLRLHDELLKKP
        LRTT+GL  TEV+DVEEMV MFLH+LAHDVKNRMIQREFV+SGET+S HFNIVLLA  RLHDELLKKP
Subjt:  LRTTSGLASTEVVDVEEMVVMFLHVLAHDVKNRMIQREFVQSGETISPHFNIVLLAVLRLHDELLKKP

XP_008466673.1 PREDICTED: uncharacterized protein LOC103504027 [Cucumis melo]

1.3e-23

83.82

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Query:  LRTTSGLASTEVVDVEEMVVMFLHVLAHDVKNRMIQREFVQSGETISPHFNIVLLAVLRLHDELLKKP
        LRTT+GL  T+V+DVEEMV MFLH+LAHDVKNRMIQREFV+SGET+S HFN+VLLAVLRLHDELLKKP
Subjt:  LRTTSGLASTEVVDVEEMVVMFLHVLAHDVKNRMIQREFVQSGETISPHFNIVLLAVLRLHDELLKKP

TrEMBL top hits

e value

%identity

Alignment

A0A1S3C1U8 putative nuclease HARBI1

2.3e-23

83.82

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Query:  LRTTSGLASTEVVDVEEMVVMFLHVLAHDVKNRMIQREFVQSGETISPHFNIVLLAVLRLHDELLKKP
        LRTT+GL  TEV+DVEEMV MFLH+LAHDVKNRMIQREFV+SGET+S HFNIVLLA  RLHDELLKKP
Subjt:  LRTTSGLASTEVVDVEEMVVMFLHVLAHDVKNRMIQREFVQSGETISPHFNIVLLAVLRLHDELLKKP

A0A1S3CRU3 uncharacterized protein LOC103504027

6.1e-24

83.82

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Query:  LRTTSGLASTEVVDVEEMVVMFLHVLAHDVKNRMIQREFVQSGETISPHFNIVLLAVLRLHDELLKKP
        LRTT+GL  T+V+DVEEMV MFLH+LAHDVKNRMIQREFV+SGET+S HFN+VLLAVLRLHDELLKKP
Subjt:  LRTTSGLASTEVVDVEEMVVMFLHVLAHDVKNRMIQREFVQSGETISPHFNIVLLAVLRLHDELLKKP

A0A5A7SWD8 Retrotransposon protein

3.0e-23

83.82

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Query:  LRTTSGLASTEVVDVEEMVVMFLHVLAHDVKNRMIQREFVQSGETISPHFNIVLLAVLRLHDELLKKP
        LRT +GL STEVVDVEEMV MFLH+LAHDVKNR+IQREF++SGETIS HFN+VLLAV+RLHDELLKKP
Subjt:  LRTTSGLASTEVVDVEEMVVMFLHVLAHDVKNRMIQREFVQSGETISPHFNIVLLAVLRLHDELLKKP

A0A5A7TXW1 Retrotransposon protein

3.0e-23

83.82

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Query:  LRTTSGLASTEVVDVEEMVVMFLHVLAHDVKNRMIQREFVQSGETISPHFNIVLLAVLRLHDELLKKP
        LRT +GL STEVVDVEEMV MFLH+LAHDVKNR+IQREF++SGETIS HFN+VLLAV+RLHDELLKKP
Subjt:  LRTTSGLASTEVVDVEEMVVMFLHVLAHDVKNRMIQREFVQSGETISPHFNIVLLAVLRLHDELLKKP

A0A5D3CQK6 Putative nuclease HARBI1

6.1e-24

83.82

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Query:  LRTTSGLASTEVVDVEEMVVMFLHVLAHDVKNRMIQREFVQSGETISPHFNIVLLAVLRLHDELLKKP
        LRTT+GL  T+V+DVEEMV MFLH+LAHDVKNRMIQREFV+SGET+S HFN+VLLAVLRLHDELLKKP
Subjt:  LRTTSGLASTEVVDVEEMVVMFLHVLAHDVKNRMIQREFVQSGETISPHFNIVLLAVLRLHDELLKKP

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT5G41980.1 CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912)

1.1e-06

36.36

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Query:  LRTTSGLASTEVVDVEEMVVMFLHVLAHDVKNRMIQREFVQSGETISPHFNIVLLAVLRLHDELLK
        L+T   L  T  + +E  + +FL ++ H+++ R +Q  F  SGETIS HFN VL AV+ +  +  +
Subjt:  LRTTSGLASTEVVDVEEMVVMFLHVLAHDVKNRMIQREFVQSGETISPHFNIVLLAVLRLHDELLK

Sequences

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CDS sequence

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ATGCCACCTCTTAGGACGACTTCTGGATTAGCGTCGACGGAAGTCGTCGATGTCGAGGAAATGGTCGTCATGTTCCTCCACGTACTCGCGCACGACGTGAAGAACCGAAT
GATCCAAAGGGAGTTCGTGCAGTCAGGTGAGACAATCTCGCCACATTTCAACATAGTCTTGTTGGCAGTGCTACGCCTGCATGACGAGTTGTTGAAGAAACCTTAA

mRNA sequence

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Protein sequence

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MPPLRTTSGLASTEVVDVEEMVVMFLHVLAHDVKNRMIQREFVQSGETISPHFNIVLLAVLRLHDELLKKP

PI0015797 (gene) of Melon (PI 482460) v1 genome