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PI0015952 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0015952
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
Descriptionprotein RADIALIS-like 1
Genome locationchr01:6194414..6196207
RNA-Seq ExpressionPI0015952
SyntenyPI0015952
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0003700 - DNA-binding transcription factor activity (molecular function)
InterPro domainsIPR001005 - SANT/Myb domain
IPR009057 - Homeobox-like domain superfamily
IPR017884 - SANT domain
IPR017930 - Myb domain
IPR044636 - Transcription factor RADIALIS-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0036170.1 protein RADIALIS-like 1 [Cucumis melo var. makuwa]1.8e-2984.21Show/hide
Query:  MASMSAHGSSAWTAIENKAFEKALAIYDKDTPERWLNVAKAIGGKTEEEVKRHYQLLLEDVNHIEAGQIPFPYRNS
        MASMSAHGS  WTA +NKAFE+ALA+YDKDTP+RWLNVAKAIGGKTEEEVKRHYQLLLEDV HIE+G++PFPYR S
Subjt:  MASMSAHGSSAWTAIENKAFEKALAIYDKDTPERWLNVAKAIGGKTEEEVKRHYQLLLEDVNHIEAGQIPFPYRNS

KAE8645640.1 hypothetical protein Csa_020521 [Cucumis sativus]1.8e-2982.72Show/hide
Query:  MASMSAHG-SSAWTAIENKAFEKALAIYDKDTPERWLNVAKAIGGKTEEEVKRHYQLLLEDVNHIEAGQIPFPYRNSTRSS
        MASM+AHG S+ WT  +NKAFEKALA+YDKDTPERWLNVAKAIGGKTEEEVK HYQLL+EDV HIE+G+IPFPYR STRSS
Subjt:  MASMSAHG-SSAWTAIENKAFEKALAIYDKDTPERWLNVAKAIGGKTEEEVKRHYQLLLEDVNHIEAGQIPFPYRNSTRSS

XP_008447025.1 PREDICTED: protein RADIALIS-like 1 [Cucumis melo]6.0e-3085.53Show/hide
Query:  MASMSAHGSSAWTAIENKAFEKALAIYDKDTPERWLNVAKAIGGKTEEEVKRHYQLLLEDVNHIEAGQIPFPYRNS
        MASMSAHGS  WTA +NKAFEKALA+YDKDTP+RWLNVAKAIGGKTEEEVKRHYQLLLEDV HIE+G++PFPYR S
Subjt:  MASMSAHGSSAWTAIENKAFEKALAIYDKDTPERWLNVAKAIGGKTEEEVKRHYQLLLEDVNHIEAGQIPFPYRNS

XP_008447026.1 PREDICTED: protein RADIALIS-like 1 [Cucumis melo]1.3e-3595.06Show/hide
Query:  MASMSAHGSSAWTAIENKAFEKALAIYDKDTPERWLNVAKAIGGKTEEEVKRHYQLLLEDVNHIEAGQIPFPYRNSTRSSR
        MASMSAHGS+ WTAIENKAFEKALAIYDKDTPERWLNVAKAIGGKTEE+VKRHYQLLLEDVNHIE GQIPFPYRNSTRSSR
Subjt:  MASMSAHGSSAWTAIENKAFEKALAIYDKDTPERWLNVAKAIGGKTEEEVKRHYQLLLEDVNHIEAGQIPFPYRNSTRSSR

XP_022952660.1 protein RADIALIS-like 1 [Cucurbita moschata]7.9e-3083.33Show/hide
Query:  MASMSAHGSSAWTAIENKAFEKALAIYDKDTPERWLNVAKAIGGKTEEEVKRHYQLLLEDVNHIEAGQIPFPYRNSTR
        MASMSAHGSSAWTA ENKAFEKALA++D+DTPERW+NVAKAIGGKTE+EVKRHYQLL++DV HIE+G+I FPYR+STR
Subjt:  MASMSAHGSSAWTAIENKAFEKALAIYDKDTPERWLNVAKAIGGKTEEEVKRHYQLLLEDVNHIEAGQIPFPYRNSTR

TrEMBL top hitse value%identityAlignment
A0A0A0K3K0 SANT domain-containing protein7.2e-3797.53Show/hide
Query:  MASMSAHGSSAWTAIENKAFEKALAIYDKDTPERWLNVAKAIGGKTEEEVKRHYQLLLEDVNHIEAGQIPFPYRNSTRSSR
        MASMSAHGSSAWTAIENKAFEKALAIYDKDTPERWLNVAKAIGGKTEEEVKRHYQLLLEDVNHIE+GQIPFPYR STRSSR
Subjt:  MASMSAHGSSAWTAIENKAFEKALAIYDKDTPERWLNVAKAIGGKTEEEVKRHYQLLLEDVNHIEAGQIPFPYRNSTRSSR

A0A1S3BGF0 protein RADIALIS-like 16.1e-3695.06Show/hide
Query:  MASMSAHGSSAWTAIENKAFEKALAIYDKDTPERWLNVAKAIGGKTEEEVKRHYQLLLEDVNHIEAGQIPFPYRNSTRSSR
        MASMSAHGS+ WTAIENKAFEKALAIYDKDTPERWLNVAKAIGGKTEE+VKRHYQLLLEDVNHIE GQIPFPYRNSTRSSR
Subjt:  MASMSAHGSSAWTAIENKAFEKALAIYDKDTPERWLNVAKAIGGKTEEEVKRHYQLLLEDVNHIEAGQIPFPYRNSTRSSR

A0A1S3BGF6 protein RADIALIS-like 12.9e-3085.53Show/hide
Query:  MASMSAHGSSAWTAIENKAFEKALAIYDKDTPERWLNVAKAIGGKTEEEVKRHYQLLLEDVNHIEAGQIPFPYRNS
        MASMSAHGS  WTA +NKAFEKALA+YDKDTP+RWLNVAKAIGGKTEEEVKRHYQLLLEDV HIE+G++PFPYR S
Subjt:  MASMSAHGSSAWTAIENKAFEKALAIYDKDTPERWLNVAKAIGGKTEEEVKRHYQLLLEDVNHIEAGQIPFPYRNS

A0A5A7SYM4 Protein RADIALIS-like 18.5e-3084.21Show/hide
Query:  MASMSAHGSSAWTAIENKAFEKALAIYDKDTPERWLNVAKAIGGKTEEEVKRHYQLLLEDVNHIEAGQIPFPYRNS
        MASMSAHGS  WTA +NKAFE+ALA+YDKDTP+RWLNVAKAIGGKTEEEVKRHYQLLLEDV HIE+G++PFPYR S
Subjt:  MASMSAHGSSAWTAIENKAFEKALAIYDKDTPERWLNVAKAIGGKTEEEVKRHYQLLLEDVNHIEAGQIPFPYRNS

A0A6J1GKV1 protein RADIALIS-like 13.8e-3083.33Show/hide
Query:  MASMSAHGSSAWTAIENKAFEKALAIYDKDTPERWLNVAKAIGGKTEEEVKRHYQLLLEDVNHIEAGQIPFPYRNSTR
        MASMSAHGSSAWTA ENKAFEKALA++D+DTPERW+NVAKAIGGKTE+EVKRHYQLL++DV HIE+G+I FPYR+STR
Subjt:  MASMSAHGSSAWTAIENKAFEKALAIYDKDTPERWLNVAKAIGGKTEEEVKRHYQLLLEDVNHIEAGQIPFPYRNSTR

SwissProt top hitse value%identityAlignment
F4JVB8 Protein RADIALIS-like 13.3e-2365.79Show/hide
Query:  ASMSAHGSSAWTAIENKAFEKALAIYDKDTPERWLNVAKAIGGKTEEEVKRHYQLLLEDVNHIEAGQIPFP-YRNS
        +SMS+  S +WTA +NKAFE+ALA YD+DTP RW NVAK +GGKT EEVKRHY+LL++D+N IE G +PFP YR S
Subjt:  ASMSAHGSSAWTAIENKAFEKALAIYDKDTPERWLNVAKAIGGKTEEEVKRHYQLLLEDVNHIEAGQIPFP-YRNS

Q1A173 Protein RADIALIS-like 63.1e-2159.76Show/hide
Query:  MASMSAHGSSAWTAIENKAFEKALAIYDKDTPERWLNVAKAIGGKTEEEVKRHYQLLLEDVNHIEAGQIPFP-YRNSTRSSR
        MAS S    S WT  +NK FE+ALA+YDKDTP+RW NVAKA+GGKT EEVKRHY +L+ED+ +IE G++P P Y+    +SR
Subjt:  MASMSAHGSSAWTAIENKAFEKALAIYDKDTPERWLNVAKAIGGKTEEEVKRHYQLLLEDVNHIEAGQIPFP-YRNSTRSSR

Q58FS3 Transcription factor RADIALIS5.3e-2158.44Show/hide
Query:  MASMSAHGSSAWTAIENKAFEKALAIYDKDTPERWLNVAKAIGGKTEEEVKRHYQLLLEDVNHIEAGQIPFPYRNST
        MAS    G   W+A ENKAFE+ALA+YDKDTP+RW NVA+A+ G+T EEVK+HY++L+ED+ +IE+G++PFP   +T
Subjt:  MASMSAHGSSAWTAIENKAFEKALAIYDKDTPERWLNVAKAIGGKTEEEVKRHYQLLLEDVNHIEAGQIPFPYRNST

Q6NNN0 Protein RADIALIS-like 36.9e-2161.04Show/hide
Query:  MASMSAHGSSAWTAIENKAFEKALAIYDKDTPERWLNVAKAIGGKTEEEVKRHYQLLLEDVNHIEAGQIPFP-YRNS
        MAS S   S++WT  ENK FE+ALA YD+DTP+RW NVA+A+GGK+ EEV+RHY+LL+ DVN IE+G+ P P YR++
Subjt:  MASMSAHGSSAWTAIENKAFEKALAIYDKDTPERWLNVAKAIGGKTEEEVKRHYQLLLEDVNHIEAGQIPFP-YRNS

Q9SIJ5 Protein RADIALIS-like 23.7e-2259.49Show/hide
Query:  SMSAHGSSAWTAIENKAFEKALAIYDKDTPERWLNVAKAIGGKTEEEVKRHYQLLLEDVNHIEAGQIPFP-YRNSTRSS
        SMS++GS +WT  +NKAFE+ALA+YD+DTP+RW NVA+A+GGKT EE KR Y LL+ D+  IE G +PFP Y+ +T +S
Subjt:  SMSAHGSSAWTAIENKAFEKALAIYDKDTPERWLNVAKAIGGKTEEEVKRHYQLLLEDVNHIEAGQIPFP-YRNSTRSS

Arabidopsis top hitse value%identityAlignment
AT1G19510.1 RAD-like 52.4e-2161.11Show/hide
Query:  MASMSAHGSSAWTAIENKAFEKALAIYDKDTPERWLNVAKAIGGKTEEEVKRHYQLLLEDVNHIEAGQIPFP
        MAS S   SS+WT+ +NK FE+ALA+YDKDTP+RW NVAKA+G K+ EEVKRHY +L+ED+ +IE   +P P
Subjt:  MASMSAHGSSAWTAIENKAFEKALAIYDKDTPERWLNVAKAIGGKTEEEVKRHYQLLLEDVNHIEAGQIPFP

AT1G75250.1 RAD-like 62.2e-2259.76Show/hide
Query:  MASMSAHGSSAWTAIENKAFEKALAIYDKDTPERWLNVAKAIGGKTEEEVKRHYQLLLEDVNHIEAGQIPFP-YRNSTRSSR
        MAS S    S WT  +NK FE+ALA+YDKDTP+RW NVAKA+GGKT EEVKRHY +L+ED+ +IE G++P P Y+    +SR
Subjt:  MASMSAHGSSAWTAIENKAFEKALAIYDKDTPERWLNVAKAIGGKTEEEVKRHYQLLLEDVNHIEAGQIPFP-YRNSTRSSR

AT1G75250.2 RAD-like 62.2e-2259.76Show/hide
Query:  MASMSAHGSSAWTAIENKAFEKALAIYDKDTPERWLNVAKAIGGKTEEEVKRHYQLLLEDVNHIEAGQIPFP-YRNSTRSSR
        MAS S    S WT  +NK FE+ALA+YDKDTP+RW NVAKA+GGKT EEVKRHY +L+ED+ +IE G++P P Y+    +SR
Subjt:  MASMSAHGSSAWTAIENKAFEKALAIYDKDTPERWLNVAKAIGGKTEEEVKRHYQLLLEDVNHIEAGQIPFP-YRNSTRSSR

AT2G21650.1 Homeodomain-like superfamily protein2.6e-2359.49Show/hide
Query:  SMSAHGSSAWTAIENKAFEKALAIYDKDTPERWLNVAKAIGGKTEEEVKRHYQLLLEDVNHIEAGQIPFP-YRNSTRSS
        SMS++GS +WT  +NKAFE+ALA+YD+DTP+RW NVA+A+GGKT EE KR Y LL+ D+  IE G +PFP Y+ +T +S
Subjt:  SMSAHGSSAWTAIENKAFEKALAIYDKDTPERWLNVAKAIGGKTEEEVKRHYQLLLEDVNHIEAGQIPFP-YRNSTRSS

AT4G39250.1 RAD-like 12.4e-2465.79Show/hide
Query:  ASMSAHGSSAWTAIENKAFEKALAIYDKDTPERWLNVAKAIGGKTEEEVKRHYQLLLEDVNHIEAGQIPFP-YRNS
        +SMS+  S +WTA +NKAFE+ALA YD+DTP RW NVAK +GGKT EEVKRHY+LL++D+N IE G +PFP YR S
Subjt:  ASMSAHGSSAWTAIENKAFEKALAIYDKDTPERWLNVAKAIGGKTEEEVKRHYQLLLEDVNHIEAGQIPFP-YRNS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTTCAATGTCTGCTCACGGGTCAAGTGCATGGACTGCAATTGAAAACAAAGCCTTTGAGAAAGCTTTGGCAATTTATGACAAAGACACACCTGAGAGATGGCTGAA
TGTTGCAAAGGCCATTGGTGGAAAAACTGAAGAAGAAGTCAAGAGGCATTATCAACTTCTTCTTGAGGATGTTAACCATATTGAGGCTGGTCAAATTCCTTTTCCCTATC
GAAACTCTACGAGATCGAGTCGCTGA
mRNA sequenceShow/hide mRNA sequence
TCTCTTTCAAATTCAAAAGATTTCCCCACTGCCACAATTTGACACTATAATGAACAAACCCTTCAACCCTTACTCCTTATAAATACCACACTCACCTTTAGTGTTCATTG
CCACATATCATATTCTTGAAGTTTTTTTTTTTGTTTTGCCAAAACATAGCATTGACCAAATGGCTTCAATGTCTGCTCACGGGTCAAGTGCATGGACTGCAATTGAAAAC
AAAGCCTTTGAGAAAGCTTTGGCAATTTATGACAAAGACACACCTGAGAGATGGCTGAATGTTGCAAAGGCCATTGGTGGAAAAACTGAAGAAGAAGTCAAGAGGCATTA
TCAACTTCTTCTTGAGGATGTTAACCATATTGAGGCTGGTCAAATTCCTTTTCCCTATCGAAACTCTACGAGATCGAGTCGCTGACTGCTTATGAAACGAGGATGGAAGA
AACATATGAATAGATAAAATGAGACAGCTCATCAAAGTATGGAAGAATAAAGGAAGAGGAAGAATCATTTACTCTCTATTGTACTTGTAATGCCCCTTTAATCTAACTGT
AAAGTATCAAAATATTGAAAGAATAATAATTT
Protein sequenceShow/hide protein sequence
MASMSAHGSSAWTAIENKAFEKALAIYDKDTPERWLNVAKAIGGKTEEEVKRHYQLLLEDVNHIEAGQIPFPYRNSTRSSR