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PI0015962 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0015962
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrotrans_gag domain-containing protein
Genome locationchr12:12694768..12695061
RNA-Seq ExpressionPI0015962
SyntenyPI0015962
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
GO:0005488 - binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0031989.1 putative Retrotransposon protein [Cucumis melo var. makuwa]3.7e-1864.38Show/hide
Query:  MTIAKYEKKFTELAKYALAFVIDEIDKSKRFEDGLRMEIRAPMTTNMDWSDFSILVEAAMRVERCLAEEKKNK
        M I +YEK+F ELAKYAL FV DE+DK KRFE+G+R EIRAP+T NMDWS+ S +V+ AMRVE+ + ++KKNK
Subjt:  MTIAKYEKKFTELAKYALAFVIDEIDKSKRFEDGLRMEIRAPMTTNMDWSDFSILVEAAMRVERCLAEEKKNK

KAA0062038.1 hypothetical protein E6C27_scaffold89G003760 [Cucumis melo var. makuwa]1.4e-2063.64Show/hide
Query:  MTIAKYEKKFTELAKYALAFVIDEIDKSKRFEDGLRMEIRAPMTTNMDWSDFSILVEAAMRVERCLAEEKKNKNAKEEPCIQNVSNTR
        +T+A YEK+FTELAKYALAFV+DE DK KRFE+GL+ EI A +TT+MD   FS LVEAAMRVERC+  +KKNK +K++PC Q+  + R
Subjt:  MTIAKYEKKFTELAKYALAFVIDEIDKSKRFEDGLRMEIRAPMTTNMDWSDFSILVEAAMRVERCLAEEKKNKNAKEEPCIQNVSNTR

KAA0062762.1 zf-CCHC domain-containing protein [Cucumis melo var. makuwa]1.1e-2262.64Show/hide
Query:  MTIAKYEKKFTELAKYALAFVIDEIDKSKRFEDGLRMEIRAPMTTNMDWSDFSILVEAAMRVERCLAEEKKNKNAKEEPCIQNVSNTRGSE
        MT+ +YEK FTELAKYALAFV++E DK KRFE+GLR EIRA +T +MDWSDFS LVE  M VE+C+ E+KKN   K++PC Q+ S+ R  E
Subjt:  MTIAKYEKKFTELAKYALAFVIDEIDKSKRFEDGLRMEIRAPMTTNMDWSDFSILVEAAMRVERCLAEEKKNKNAKEEPCIQNVSNTRGSE

TYJ96623.1 Retrovirus-related Pol polyprotein from transposon opus [Cucumis melo var. makuwa]2.7e-1658.02Show/hide
Query:  MTIAKYEKKFTELAKYALAFVIDEIDKSKRFEDGLRMEIRAPMTTNMDWSDFSILVEAAMRVERCLAEEKKN----KNAKE
        MT+A+YEKK+TEL+KY    + DE+++ KRF +GLR EIR PMT   DW+DFS LVEAA+RVE+CL E K+     KNA+E
Subjt:  MTIAKYEKKFTELAKYALAFVIDEIDKSKRFEDGLRMEIRAPMTTNMDWSDFSILVEAAMRVERCLAEEKKN----KNAKE

TYK04983.1 uncharacterized protein E5676_scaffold143G002070 [Cucumis melo var. makuwa]1.4e-2063.64Show/hide
Query:  MTIAKYEKKFTELAKYALAFVIDEIDKSKRFEDGLRMEIRAPMTTNMDWSDFSILVEAAMRVERCLAEEKKNKNAKEEPCIQNVSNTR
        +T+A YEK+FTELAKYALAFV+DE DK KRFE+GL+ EI A +TT+MD   FS LVEAAMRVERC+  +KKNK +K++PC Q+  + R
Subjt:  MTIAKYEKKFTELAKYALAFVIDEIDKSKRFEDGLRMEIRAPMTTNMDWSDFSILVEAAMRVERCLAEEKKNKNAKEEPCIQNVSNTR

TrEMBL top hitse value%identityAlignment
A0A5A7UZM6 Gag protease polyprotein-like protein1.3e-1651.55Show/hide
Query:  MTIAKYEKKFTELAKYALAFVIDEIDKSKRFEDGLRMEIRAPMTTNMDWSDFSILVEAAMRVERCLAEEKKNKNAKEEPCIQNVS---NTRGSERRG
        MTIA+YEKK+TEL+ YA   + DE+++ KRFE+GLR EIR P+T   DW+DFS LVEAA+RVE+ L E K+ +   +  C  + S   N +G ER G
Subjt:  MTIAKYEKKFTELAKYALAFVIDEIDKSKRFEDGLRMEIRAPMTTNMDWSDFSILVEAAMRVERCLAEEKKNKNAKEEPCIQNVS---NTRGSERRG

A0A5A7V373 Uncharacterized protein6.6e-2163.64Show/hide
Query:  MTIAKYEKKFTELAKYALAFVIDEIDKSKRFEDGLRMEIRAPMTTNMDWSDFSILVEAAMRVERCLAEEKKNKNAKEEPCIQNVSNTR
        +T+A YEK+FTELAKYALAFV+DE DK KRFE+GL+ EI A +TT+MD   FS LVEAAMRVERC+  +KKNK +K++PC Q+  + R
Subjt:  MTIAKYEKKFTELAKYALAFVIDEIDKSKRFEDGLRMEIRAPMTTNMDWSDFSILVEAAMRVERCLAEEKKNKNAKEEPCIQNVSNTR

A0A5A7V3F2 Zf-CCHC domain-containing protein5.4e-2362.64Show/hide
Query:  MTIAKYEKKFTELAKYALAFVIDEIDKSKRFEDGLRMEIRAPMTTNMDWSDFSILVEAAMRVERCLAEEKKNKNAKEEPCIQNVSNTRGSE
        MT+ +YEK FTELAKYALAFV++E DK KRFE+GLR EIRA +T +MDWSDFS LVE  M VE+C+ E+KKN   K++PC Q+ S+ R  E
Subjt:  MTIAKYEKKFTELAKYALAFVIDEIDKSKRFEDGLRMEIRAPMTTNMDWSDFSILVEAAMRVERCLAEEKKNKNAKEEPCIQNVSNTRGSE

A0A5D3BZ05 Retrotrans_gag domain-containing protein6.6e-2163.64Show/hide
Query:  MTIAKYEKKFTELAKYALAFVIDEIDKSKRFEDGLRMEIRAPMTTNMDWSDFSILVEAAMRVERCLAEEKKNKNAKEEPCIQNVSNTR
        +T+A YEK+FTELAKYALAFV+DE DK KRFE+GL+ EI A +TT+MD   FS LVEAAMRVERC+  +KKNK +K++PC Q+  + R
Subjt:  MTIAKYEKKFTELAKYALAFVIDEIDKSKRFEDGLRMEIRAPMTTNMDWSDFSILVEAAMRVERCLAEEKKNKNAKEEPCIQNVSNTR

A0A5D3D2P1 Putative Retrotransposon protein1.8e-1864.38Show/hide
Query:  MTIAKYEKKFTELAKYALAFVIDEIDKSKRFEDGLRMEIRAPMTTNMDWSDFSILVEAAMRVERCLAEEKKNK
        M I +YEK+F ELAKYAL FV DE+DK KRFE+G+R EIRAP+T NMDWS+ S +V+ AMRVE+ + ++KKNK
Subjt:  MTIAKYEKKFTELAKYALAFVIDEIDKSKRFEDGLRMEIRAPMTTNMDWSDFSILVEAAMRVERCLAEEKKNK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACCATCGCAAAGTATGAGAAGAAATTCACTGAATTGGCTAAGTATGCGTTAGCCTTTGTGATTGATGAGATAGATAAAAGCAAACGATTCGAAGATGGTTTGCGAAT
GGAAATTAGAGCCCCAATGACGACCAACATGGACTGGTCAGATTTCTCCATATTAGTAGAAGCTGCCATGAGAGTCGAGAGATGTTTGGCAGAAGAAAAGAAAAACAAGA
ATGCAAAGGAGGAACCATGCATTCAAAATGTTAGTAACACACGAGGTAGTGAGCGACGAGGCGAAAACAGGTGA
mRNA sequenceShow/hide mRNA sequence
ATGACCATCGCAAAGTATGAGAAGAAATTCACTGAATTGGCTAAGTATGCGTTAGCCTTTGTGATTGATGAGATAGATAAAAGCAAACGATTCGAAGATGGTTTGCGAAT
GGAAATTAGAGCCCCAATGACGACCAACATGGACTGGTCAGATTTCTCCATATTAGTAGAAGCTGCCATGAGAGTCGAGAGATGTTTGGCAGAAGAAAAGAAAAACAAGA
ATGCAAAGGAGGAACCATGCATTCAAAATGTTAGTAACACACGAGGTAGTGAGCGACGAGGCGAAAACAGGTGA
Protein sequenceShow/hide protein sequence
MTIAKYEKKFTELAKYALAFVIDEIDKSKRFEDGLRMEIRAPMTTNMDWSDFSILVEAAMRVERCLAEEKKNKNAKEEPCIQNVSNTRGSERRGENR