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PI0016001 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0016001
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrotrans_gag domain-containing protein
Genome locationchr04:23166234..23167099
RNA-Seq ExpressionPI0016001
SyntenyPI0016001
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0031967.1 retrotransposon gag protein [Cucumis melo var. makuwa]5.3e-1046.74Show/hide
Query:  MCNSFQHHHIFYALLIQYFYERLVSNDRSTIVATTGGALLNKTPIDAQALISTIATNVQQFETRDRTPLSITYSQEVFIARGQQLVAEELVT
        +C +F HHHIFY  LIQYFY  L+S+DR+T+ A  GGAL NK P +A+ LIS +A N Q+F  R  + L  + ++EV   + Q L    L+T
Subjt:  MCNSFQHHHIFYALLIQYFYERLVSNDRSTIVATTGGALLNKTPIDAQALISTIATNVQQFETRDRTPLSITYSQEVFIARGQQLVAEELVT

RDX76166.1 hypothetical protein CR513_43870, partial [Mucuna pruriens]5.3e-1043.09Show/hide
Query:  MCNSFQHHHIFYALLIQYFYERLVSNDRSTIVATTGGALLNKTPIDAQALISTIATNVQQFETRDRTPLSITYSQEVFIARGQQLVAEELVTQLAN----
        +C++  HH I   LLIQYFYE L   DRS I ATTGGAL++KTP  A+ LIS +A+N QQF  R   P       E+  A  Q+L  E  +T+L +    
Subjt:  MCNSFQHHHIFYALLIQYFYERLVSNDRSTIVATTGGALLNKTPIDAQALISTIATNVQQFETRDRTPLSITYSQEVFIARGQQLVAEELVTQLAN----

Query:  -AVGRHDMSVISTICSDEILAPS
         AVG+H +     IC+     PS
Subjt:  -AVGRHDMSVISTICSDEILAPS

RDY01485.1 hypothetical protein CR513_15172, partial [Mucuna pruriens]1.2e-0959.38Show/hide
Query:  MCNSFQHHHIFYALLIQYFYERLVSNDRSTIVATTGGALLNKTPIDAQALISTIATNVQQFETR
        +C ++ HHHI   LLIQYFYE L   DRS I AT+GGAL++KTP  A+ LIS +A+N QQFE R
Subjt:  MCNSFQHHHIFYALLIQYFYERLVSNDRSTIVATTGGALLNKTPIDAQALISTIATNVQQFETR

XP_008460738.1 PREDICTED: uncharacterized protein LOC103499500 [Cucumis melo]1.2e-0945.83Show/hide
Query:  MCNSFQHHHIFYALLIQYFYERLVSNDRSTIVATTGGALLNKTPIDAQALISTIATNVQQFETRDRTPLSITYSQEVFIARGQQLVAEELVTQLAN
        +C SF HHHIF   LIQYFY  L+S DR T+ A  GGAL+NKTP +A+ LIS +A N Q F  R  + L  + ++EV   + Q L    L+T   +
Subjt:  MCNSFQHHHIFYALLIQYFYERLVSNDRSTIVATTGGALLNKTPIDAQALISTIATNVQQFETRDRTPLSITYSQEVFIARGQQLVAEELVTQLAN

XP_027174516.1 uncharacterized protein LOC113774148 [Coffea eugenioides]4.0e-1042.86Show/hide
Query:  MCNSFQHHHIFYALLIQYFYERLVSNDRSTIVATTGGALLNKTPIDAQALISTIATNVQQFETRDRTPLSITYSQEVFIARGQQLVAEELVTQLANAVGR
        +CN    H I   LLIQYFYE L+  DRS I AT+GGAL+NKTP +A+ LI  +A N QQF TR+  P+      E    + Q       V QL   VG 
Subjt:  MCNSFQHHHIFYALLIQYFYERLVSNDRSTIVATTGGALLNKTPIDAQALISTIATNVQQFETRDRTPLSITYSQEVFIARGQQLVAEELVTQLANAVGR

Query:  HDMSVISTICSD
           + +  IC+D
Subjt:  HDMSVISTICSD

TrEMBL top hitse value%identityAlignment
A0A1S3CD34 uncharacterized protein LOC1034995005.7e-1045.83Show/hide
Query:  MCNSFQHHHIFYALLIQYFYERLVSNDRSTIVATTGGALLNKTPIDAQALISTIATNVQQFETRDRTPLSITYSQEVFIARGQQLVAEELVTQLAN
        +C SF HHHIF   LIQYFY  L+S DR T+ A  GGAL+NKTP +A+ LIS +A N Q F  R  + L  + ++EV   + Q L    L+T   +
Subjt:  MCNSFQHHHIFYALLIQYFYERLVSNDRSTIVATTGGALLNKTPIDAQALISTIATNVQQFETRDRTPLSITYSQEVFIARGQQLVAEELVTQLAN

A0A371FCY7 Retrotrans_gag domain-containing protein (Fragment)2.5e-1043.09Show/hide
Query:  MCNSFQHHHIFYALLIQYFYERLVSNDRSTIVATTGGALLNKTPIDAQALISTIATNVQQFETRDRTPLSITYSQEVFIARGQQLVAEELVTQLAN----
        +C++  HH I   LLIQYFYE L   DRS I ATTGGAL++KTP  A+ LIS +A+N QQF  R   P       E+  A  Q+L  E  +T+L +    
Subjt:  MCNSFQHHHIFYALLIQYFYERLVSNDRSTIVATTGGALLNKTPIDAQALISTIATNVQQFETRDRTPLSITYSQEVFIARGQQLVAEELVTQLAN----

Query:  -AVGRHDMSVISTICSDEILAPS
         AVG+H +     IC+     PS
Subjt:  -AVGRHDMSVISTICSDEILAPS

A0A371HFD2 Retrotrans_gag domain-containing protein (Fragment)5.7e-1059.38Show/hide
Query:  MCNSFQHHHIFYALLIQYFYERLVSNDRSTIVATTGGALLNKTPIDAQALISTIATNVQQFETR
        +C ++ HHHI   LLIQYFYE L   DRS I AT+GGAL++KTP  A+ LIS +A+N QQFE R
Subjt:  MCNSFQHHHIFYALLIQYFYERLVSNDRSTIVATTGGALLNKTPIDAQALISTIATNVQQFETR

A0A371ID38 Retrotrans_gag domain-containing protein (Fragment)9.7e-1040.87Show/hide
Query:  MCNSFQHHHIFYALLIQYFYERLVSNDRSTIVATTGGALLNKTPIDAQALISTIATNVQQFETRDRTPLSITYSQEVFIARGQQLVAEELVTQLAN----
        +C ++ HH I   LLIQYFYE L+  DRS I A +GGAL++K P  A+ LIS +A+N QQF  R   P       E+  A  Q+L  E  +T+L +    
Subjt:  MCNSFQHHHIFYALLIQYFYERLVSNDRSTIVATTGGALLNKTPIDAQALISTIATNVQQFETRDRTPLSITYSQEVFIARGQQLVAEELVTQLAN----

Query:  -AVGRHDMSVISTIC
         AVG+H  ++ + +C
Subjt:  -AVGRHDMSVISTIC

A0A5A7SRF5 Retrotransposon gag protein2.5e-1046.74Show/hide
Query:  MCNSFQHHHIFYALLIQYFYERLVSNDRSTIVATTGGALLNKTPIDAQALISTIATNVQQFETRDRTPLSITYSQEVFIARGQQLVAEELVT
        +C +F HHHIFY  LIQYFY  L+S+DR+T+ A  GGAL NK P +A+ LIS +A N Q+F  R  + L  + ++EV   + Q L    L+T
Subjt:  MCNSFQHHHIFYALLIQYFYERLVSNDRSTIVATTGGALLNKTPIDAQALISTIATNVQQFETRDRTPLSITYSQEVFIARGQQLVAEELVT

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTGCAACAGTTTTCAACATCACCACATTTTTTACGCGCTTCTGATTCAGTACTTCTATGAGAGACTTGTCTCCAACGATAGAAGTACAATAGTTGCAACTACTGGAGG
TGCCTTGCTGAATAAGACTCCTATAGATGCCCAAGCACTGATTTCCACCATCGCTACTAATGTCCAGCAGTTTGAAACCAGAGACCGAACACCCCTGTCCATCACATATT
CACAAGAGGTATTCATTGCACGTGGACAACAACTTGTTGCTGAGGAGCTTGTAACTCAGTTGGCTAATGCAGTAGGGAGACATGACATGAGTGTCATCTCCACCATTTGC
TCTGATGAGATCCTAGCTCCATCTGTCCCTGATCTTTGGCCAGGTATAAAGTTCAACCCCCCATTAGGACCTCCTGATGATGACGTTCCTGTTGCTCCCCTTCCTATCAG
GTTGGTAGGAGAAGTAGCATCAATGGATGAGGAAGAGAAGAAAAGTCCTCCTACATCGCCAAGTAAGAAAAGCCCCAAAAAGAAAGGTAAGAAAATCTAG
mRNA sequenceShow/hide mRNA sequence
ATGTGCAACAGTTTTCAACATCACCACATTTTTTACGCGCTTCTGATTCAGTACTTCTATGAGAGACTTGTCTCCAACGATAGAAGTACAATAGTTGCAACTACTGGAGG
TGCCTTGCTGAATAAGACTCCTATAGATGCCCAAGCACTGATTTCCACCATCGCTACTAATGTCCAGCAGTTTGAAACCAGAGACCGAACACCCCTGTCCATCACATATT
CACAAGAGGTATTCATTGCACGTGGACAACAACTTGTTGCTGAGGAGCTTGTAACTCAGTTGGCTAATGCAGTAGGGAGACATGACATGAGTGTCATCTCCACCATTTGC
TCTGATGAGATCCTAGCTCCATCTGTCCCTGATCTTTGGCCAGGTATAAAGTTCAACCCCCCATTAGGACCTCCTGATGATGACGTTCCTGTTGCTCCCCTTCCTATCAG
GTTGGTAGGAGAAGTAGCATCAATGGATGAGGAAGAGAAGAAAAGTCCTCCTACATCGCCAAGTAAGAAAAGCCCCAAAAAGAAAGGTAAGAAAATCTAG
Protein sequenceShow/hide protein sequence
MCNSFQHHHIFYALLIQYFYERLVSNDRSTIVATTGGALLNKTPIDAQALISTIATNVQQFETRDRTPLSITYSQEVFIARGQQLVAEELVTQLANAVGRHDMSVISTIC
SDEILAPSVPDLWPGIKFNPPLGPPDDDVPVAPLPIRLVGEVASMDEEEKKSPPTSPSKKSPKKKGKKI