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PI0016011 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0016011
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
Descriptionprotein LOL2
Genome locationchr12:5074175..5076425
RNA-Seq ExpressionPI0016011
SyntenyPI0016011
Gene Ontology termsGO:0009617 - response to bacterium (biological process)
GO:0005634 - nucleus (cellular component)
InterPro domainsIPR005735 - Zinc finger, LSD1-type
IPR040319 - LSD1-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004146601.1 protein LOL2 isoform X2 [Cucumis sativus]7.5e-4898.95Show/hide
Query:  MAQMVCGTCRRLLKYLKGARYVQCSCCSTVNFVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSSCTSVTEIGVHNRRPPWSVQQGQAAPPTNFVQ
        MAQMVCGTCRRLLKYLKGARYVQCSCCSTVNFVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSSCTSVTEIGVHNRRPPWSV QGQAAPPTNFVQ
Subjt:  MAQMVCGTCRRLLKYLKGARYVQCSCCSTVNFVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSSCTSVTEIGVHNRRPPWSVQQGQAAPPTNFVQ

XP_008442535.1 PREDICTED: protein LOL2 isoform X3 [Cucumis melo]3.7e-4798.95Show/hide
Query:  MAQMVCGTCRRLLKYLKGARYVQCSCCSTVNFVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSSCTSVTEIGVHNRRPPWSVQQGQAAPPTNFVQ
        MAQMVCGTCRRLLKYLKGARYVQCS CSTVNFVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSSCTSVTEIGVHNRRPPWSVQQGQAAPPTNFVQ
Subjt:  MAQMVCGTCRRLLKYLKGARYVQCSCCSTVNFVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSSCTSVTEIGVHNRRPPWSVQQGQAAPPTNFVQ

XP_008442544.1 PREDICTED: protein LOL2 isoform X4 [Cucumis melo]3.7e-4798.95Show/hide
Query:  MAQMVCGTCRRLLKYLKGARYVQCSCCSTVNFVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSSCTSVTEIGVHNRRPPWSVQQGQAAPPTNFVQ
        MAQMVCGTCRRLLKYLKGARYVQCS CSTVNFVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSSCTSVTEIGVHNRRPPWSVQQGQAAPPTNFVQ
Subjt:  MAQMVCGTCRRLLKYLKGARYVQCSCCSTVNFVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSSCTSVTEIGVHNRRPPWSVQQGQAAPPTNFVQ

XP_011653178.1 protein LOL2 isoform X1 [Cucumis sativus]7.5e-4898.95Show/hide
Query:  MAQMVCGTCRRLLKYLKGARYVQCSCCSTVNFVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSSCTSVTEIGVHNRRPPWSVQQGQAAPPTNFVQ
        MAQMVCGTCRRLLKYLKGARYVQCSCCSTVNFVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSSCTSVTEIGVHNRRPPWSV QGQAAPPTNFVQ
Subjt:  MAQMVCGTCRRLLKYLKGARYVQCSCCSTVNFVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSSCTSVTEIGVHNRRPPWSVQQGQAAPPTNFVQ

XP_022927005.1 protein LOL2 [Cucurbita moschata]1.4e-4696.84Show/hide
Query:  MAQMVCGTCRRLLKYLKGARYVQCSCCSTVNFVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSSCTSVTEIGVHNRRPPWSVQQGQAAPPTNFVQ
        MAQMVCGTCRRLLKYLKGARYVQCSCCSTVN+VLEAHEVGQVKCGSCAVLLMYPYGASSVRCSSCT VTEIGVHNRRPPWSVQQGQAAPPTN VQ
Subjt:  MAQMVCGTCRRLLKYLKGARYVQCSCCSTVNFVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSSCTSVTEIGVHNRRPPWSVQQGQAAPPTNFVQ

TrEMBL top hitse value%identityAlignment
A0A0A0LXE3 Uncharacterized protein3.6e-4898.95Show/hide
Query:  MAQMVCGTCRRLLKYLKGARYVQCSCCSTVNFVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSSCTSVTEIGVHNRRPPWSVQQGQAAPPTNFVQ
        MAQMVCGTCRRLLKYLKGARYVQCSCCSTVNFVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSSCTSVTEIGVHNRRPPWSV QGQAAPPTNFVQ
Subjt:  MAQMVCGTCRRLLKYLKGARYVQCSCCSTVNFVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSSCTSVTEIGVHNRRPPWSVQQGQAAPPTNFVQ

A0A1S3B6K2 protein LOL2 isoform X31.8e-4798.95Show/hide
Query:  MAQMVCGTCRRLLKYLKGARYVQCSCCSTVNFVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSSCTSVTEIGVHNRRPPWSVQQGQAAPPTNFVQ
        MAQMVCGTCRRLLKYLKGARYVQCS CSTVNFVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSSCTSVTEIGVHNRRPPWSVQQGQAAPPTNFVQ
Subjt:  MAQMVCGTCRRLLKYLKGARYVQCSCCSTVNFVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSSCTSVTEIGVHNRRPPWSVQQGQAAPPTNFVQ

A0A1S3B6Q2 protein LOL2 isoform X41.8e-4798.95Show/hide
Query:  MAQMVCGTCRRLLKYLKGARYVQCSCCSTVNFVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSSCTSVTEIGVHNRRPPWSVQQGQAAPPTNFVQ
        MAQMVCGTCRRLLKYLKGARYVQCS CSTVNFVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSSCTSVTEIGVHNRRPPWSVQQGQAAPPTNFVQ
Subjt:  MAQMVCGTCRRLLKYLKGARYVQCSCCSTVNFVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSSCTSVTEIGVHNRRPPWSVQQGQAAPPTNFVQ

A0A5A7UQS3 Protein LOL2 isoform X41.8e-4798.95Show/hide
Query:  MAQMVCGTCRRLLKYLKGARYVQCSCCSTVNFVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSSCTSVTEIGVHNRRPPWSVQQGQAAPPTNFVQ
        MAQMVCGTCRRLLKYLKGARYVQCS CSTVNFVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSSCTSVTEIGVHNRRPPWSVQQGQAAPPTNFVQ
Subjt:  MAQMVCGTCRRLLKYLKGARYVQCSCCSTVNFVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSSCTSVTEIGVHNRRPPWSVQQGQAAPPTNFVQ

A0A5D3DST5 Protein LOL2 isoform X31.8e-4798.95Show/hide
Query:  MAQMVCGTCRRLLKYLKGARYVQCSCCSTVNFVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSSCTSVTEIGVHNRRPPWSVQQGQAAPPTNFVQ
        MAQMVCGTCRRLLKYLKGARYVQCS CSTVNFVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSSCTSVTEIGVHNRRPPWSVQQGQAAPPTNFVQ
Subjt:  MAQMVCGTCRRLLKYLKGARYVQCSCCSTVNFVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSSCTSVTEIGVHNRRPPWSVQQGQAAPPTNFVQ

SwissProt top hitse value%identityAlignment
O65426 Protein LOL22.5e-3069.05Show/hide
Query:  AQMVCGTCRRLLKYLKGARYVQCSCCSTVNFVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSSCTSVTEIGVHNRRPPWSVQQG
        AQMVCG+CRRLL YL+G+++V+CS C TVN VLEA++VGQV C +C +LLMYPYGA +VRCSSC SVT+I  +N+RPPWS QQG
Subjt:  AQMVCGTCRRLLKYLKGARYVQCSCCSTVNFVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSSCTSVTEIGVHNRRPPWSVQQG

Q0J7V9 Protein LSD11.5e-1958.33Show/hide
Query:  MAQMVCGTCRRLLKYLKGARYVQCSCCSTVNFVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSSCTSVTEIG
        MAQ+VCG C  LL Y++GA  VQCSCC TVN  +EA++V  V CG+C +LLMY YGA SV+C+ C  VT +G
Subjt:  MAQMVCGTCRRLLKYLKGARYVQCSCCSTVNFVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSSCTSVTEIG

Q6ASS2 Protein LOL32.5e-1744.79Show/hide
Query:  MAQMVCGTCRRLLKYLKGARYVQCSCCSTVNFVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSSCTSVTEIGVHNRRP-----PWSVQQGQAAPPT
        MA ++CG CR LL Y + A  V+CSCCSTVN V   + +  V CG C   LMYPYGA SV+C+ C  +T  G++   P     P S      APP+
Subjt:  MAQMVCGTCRRLLKYLKGARYVQCSCCSTVNFVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSSCTSVTEIGVHNRRP-----PWSVQQGQAAPPT

Q704V3 Protein LOL54.2e-2561.9Show/hide
Query:  MAQMVCGTCRRLLKYLKGARYVQCSCCSTVNFVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSSCTSVTEIGVHNRRPPWSVQQ
        + QMVCG+CR LL Y +GA YV C+CC T+N+VLEAHEVG+V CG CA LLMYP+GA +V+CS C  VTEIG  N R   S++Q
Subjt:  MAQMVCGTCRRLLKYLKGARYVQCSCCSTVNFVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSSCTSVTEIGVHNRRPPWSVQQ

Q93ZB1 Protein LOL19.0e-2059.72Show/hide
Query:  MAQMVCGTCRRLLKYLKGARYVQCSCCSTVNFVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSSCTSVTEIG
        MAQ+VCG C  LL Y++GA  VQCSCC TVN  LEA++V  V CG+C +LLMY YGA SV+C+ C  VT +G
Subjt:  MAQMVCGTCRRLLKYLKGARYVQCSCCSTVNFVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSSCTSVTEIG

Arabidopsis top hitse value%identityAlignment
AT1G32540.1 lsd one like 16.4e-2159.72Show/hide
Query:  MAQMVCGTCRRLLKYLKGARYVQCSCCSTVNFVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSSCTSVTEIG
        MAQ+VCG C  LL Y++GA  VQCSCC TVN  LEA++V  V CG+C +LLMY YGA SV+C+ C  VT +G
Subjt:  MAQMVCGTCRRLLKYLKGARYVQCSCCSTVNFVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSSCTSVTEIG

AT1G32540.2 lsd one like 16.4e-2159.72Show/hide
Query:  MAQMVCGTCRRLLKYLKGARYVQCSCCSTVNFVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSSCTSVTEIG
        MAQ+VCG C  LL Y++GA  VQCSCC TVN  LEA++V  V CG+C +LLMY YGA SV+C+ C  VT +G
Subjt:  MAQMVCGTCRRLLKYLKGARYVQCSCCSTVNFVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSSCTSVTEIG

AT1G32540.3 lsd one like 16.4e-2159.72Show/hide
Query:  MAQMVCGTCRRLLKYLKGARYVQCSCCSTVNFVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSSCTSVTEIG
        MAQ+VCG C  LL Y++GA  VQCSCC TVN  LEA++V  V CG+C +LLMY YGA SV+C+ C  VT +G
Subjt:  MAQMVCGTCRRLLKYLKGARYVQCSCCSTVNFVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSSCTSVTEIG

AT4G20380.2 LSD1 zinc finger family protein1.7e-1843.14Show/hide
Query:  MAQMVCGTCRRLLKYLKGARYVQCSCCSTVNFV---------LEAHEVGQVKCGSCAVLLMYPYGASSVRCSSCTSVTEIGVHNRRPPWSVQQ--GQAAP
        MA ++CG CR +L Y +GA  V+CSCC T N V           + +V Q+ CG C   LMYPYGASSV+C+ C  VT + + N R P    +  G A P
Subjt:  MAQMVCGTCRRLLKYLKGARYVQCSCCSTVNFV---------LEAHEVGQVKCGSCAVLLMYPYGASSVRCSSCTSVTEIGVHNRRPPWSVQQ--GQAAP

Query:  PT
        P+
Subjt:  PT

AT4G21610.1 lsd one like 21.8e-3169.05Show/hide
Query:  AQMVCGTCRRLLKYLKGARYVQCSCCSTVNFVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSSCTSVTEIGVHNRRPPWSVQQG
        AQMVCG+CRRLL YL+G+++V+CS C TVN VLEA++VGQV C +C +LLMYPYGA +VRCSSC SVT+I  +N+RPPWS QQG
Subjt:  AQMVCGTCRRLLKYLKGARYVQCSCCSTVNFVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSSCTSVTEIGVHNRRPPWSVQQG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCACAAATGGTCTGTGGTACATGCCGTCGCCTGCTTAAGTATTTAAAGGGAGCCAGATATGTTCAATGCTCTTGCTGTTCAACAGTTAACTTTGTGTTAGAAGCTCA
CGAGGTTGGACAAGTTAAATGCGGTTCTTGTGCAGTGTTGCTTATGTACCCATATGGAGCATCATCAGTTAGGTGTTCCTCGTGTACCAGTGTGACAGAAATTGGGGTTC
ATAATAGACGGCCACCGTGGTCTGTTCAGCAGGGACAAGCAGCCCCTCCTACCAACTTTGTCCAGTAG
mRNA sequenceShow/hide mRNA sequence
GATTGACCCAAATTTAGATCGGCTAATGTCAAATGATCCAGATTCTGAAAAACAATGAAAATTAACATTTTGCAGACGACACAAAGTACTTGAAATCTTGTGATCTTATG
AGTTTTCTAAAACCTGAAATCTTGTTCGGGGTCTCATGCATTCACGATAGATGAGAACCTGCGATTGTGAATGGACAATTTAACTTTGCTGACATGGCACAAATGGTCTG
TGGTACATGCCGTCGCCTGCTTAAGTATTTAAAGGGAGCCAGATATGTTCAATGCTCTTGCTGTTCAACAGTTAACTTTGTGTTAGAAGCTCACGAGGTTGGACAAGTTA
AATGCGGTTCTTGTGCAGTGTTGCTTATGTACCCATATGGAGCATCATCAGTTAGGTGTTCCTCGTGTACCAGTGTGACAGAAATTGGGGTTCATAATAGACGGCCACCG
TGGTCTGTTCAGCAGGGACAAGCAGCCCCTCCTACCAACTTTGTCCAGTAG
Protein sequenceShow/hide protein sequence
MAQMVCGTCRRLLKYLKGARYVQCSCCSTVNFVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSSCTSVTEIGVHNRRPPWSVQQGQAAPPTNFVQ