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PI0016054 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0016054
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrotransposon protein
Genome locationchr12:14724193..14724582
RNA-Seq ExpressionPI0016054
SyntenyPI0016054
Gene Ontology termsGO:0046872 - metal ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0031678.1 retrotransposon protein [Cucumis melo var. makuwa]4.2e-4172.31Show/hide
Query:  MYSR-VGMSLDEMFRTRAGQSSEGRNCSSGSKRKQSGQYYETVKVIRNAMEFANDQLKAIVDWPKEKRATEVKLHVEVVKQLQDIPELRSQDKVKLMQII
        +YS+ V MSLDE+F  RAGQ+SE RN SSGSKRK+  ++YE V+VI +A EF NDQLK I DWPKEKRATEV+L  EVVKQLQDIP+LRSQD+ KLMQI+
Subjt:  MYSR-VGMSLDEMFRTRAGQSSEGRNCSSGSKRKQSGQYYETVKVIRNAMEFANDQLKAIVDWPKEKRATEVKLHVEVVKQLQDIPELRSQDKVKLMQII

Query:  FRSVDNIDGFLSIPTKLKLEYYNVLLEENV
        FRSV+ I+GFLSIPTKLKLEY N+LLE NV
Subjt:  FRSVDNIDGFLSIPTKLKLEYYNVLLEENV

KAA0033290.1 putative nuclease HARBI1 [Cucumis melo var. makuwa]1.0e-3970.08Show/hide
Query:  MYSR-VGMSLDEMFRTRAGQSSEGRNCSSGSKRKQSGQYYETVKVIRNAMEFANDQLKAIVDWPKEKRATEVKLHVEVVKQLQDIPELRSQDKVKLMQII
        MYS+ V MS DEMF  RAGQ+SE +NCSSGSKRKQ  ++YETV+VI++A+EF NDQLKAI +WPKEKRATEV+L  EV+KQLQDIPEL+S+D+ KL+QI+
Subjt:  MYSR-VGMSLDEMFRTRAGQSSEGRNCSSGSKRKQSGQYYETVKVIRNAMEFANDQLKAIVDWPKEKRATEVKLHVEVVKQLQDIPELRSQDKVKLMQII

Query:  FRSVDNIDGFLSIPTKLKLEYYNVLLE
        FRSV+ I+GFLSIPT+ KLEY N+LL+
Subjt:  FRSVDNIDGFLSIPTKLKLEYYNVLLE

KAA0042340.1 retrotransposon protein [Cucumis melo var. makuwa]1.9e-3870.87Show/hide
Query:  MYSR-VGMSLDEMFRTRAGQSSEGRNCSSGSKRKQSGQYYETVKVIRNAMEFANDQLKAIVDWPKEKRATEVKLHVEVVKQLQDIPELRSQDKVKLMQII
        MYS+ V MSLDEMF TRAGQ+SE RNCSS SKRKQ  Q+YETV+VIR+AM+F NDQLKAI DW KEKRA +V+L   VVKQLQDIP+L+++D+ K++QI+
Subjt:  MYSR-VGMSLDEMFRTRAGQSSEGRNCSSGSKRKQSGQYYETVKVIRNAMEFANDQLKAIVDWPKEKRATEVKLHVEVVKQLQDIPELRSQDKVKLMQII

Query:  FRSVDNIDGFLSIPTKLKLEYYNVLLE
        F SV+ I+GFLSIPT+LKLEY NVLLE
Subjt:  FRSVDNIDGFLSIPTKLKLEYYNVLLE

KAE8646815.1 hypothetical protein Csa_005367, partial [Cucumis sativus]5.1e-3972.87Show/hide
Query:  MYSR-VGMSLDEMFRTRAGQSSEGRNCSSGSKRKQSGQYYETVKVIRNAMEFANDQLKAIVDWPKEKRATEVKLHVEVVKQLQDIPELRSQDKVKLMQII
        MYS+ + M  DEM  TR  QSSEGRNCSSGSKRK  GQ+YE V VI N ME  NDQLKAI +W KEKRATEV+LHVEVVKQLQDI ELR++D+VKLMQII
Subjt:  MYSR-VGMSLDEMFRTRAGQSSEGRNCSSGSKRKQSGQYYETVKVIRNAMEFANDQLKAIVDWPKEKRATEVKLHVEVVKQLQDIPELRSQDKVKLMQII

Query:  FRSVDNIDGFLSIPTKLKLEYYNVLLEEN
        F  VD+I+GFLS PTKLKLEY  VLLE+N
Subjt:  FRSVDNIDGFLSIPTKLKLEYYNVLLEEN

XP_008441954.1 PREDICTED: uncharacterized protein LOC103485953 [Cucumis melo]3.9e-3969.23Show/hide
Query:  MYSR-VGMSLDEMFRTRAGQSSEGRNCSSGSKRKQSGQYYETVKVIRNAMEFANDQLKAIVDWPKEKRATEVKLHVEVVKQLQDIPELRSQDKVKLMQII
        MYS+ V MS DEMF  RAGQ+SE RNCSS SKRK+  + YETV+VIR+ MEF N+QLKAI DWPKEKRA EV++  +VVKQLQDIP+LRSQD+ KLMQI+
Subjt:  MYSR-VGMSLDEMFRTRAGQSSEGRNCSSGSKRKQSGQYYETVKVIRNAMEFANDQLKAIVDWPKEKRATEVKLHVEVVKQLQDIPELRSQDKVKLMQII

Query:  FRSVDNIDGFLSIPTKLKLEYYNVLLEENV
        FRS++ I+GFLSIPT+LKLEY N+LL+  V
Subjt:  FRSVDNIDGFLSIPTKLKLEYYNVLLEENV

TrEMBL top hitse value%identityAlignment
A0A0A0KFW0 Uncharacterized protein8.5e-4073.08Show/hide
Query:  MYSR-VGMSLDEMFRTRAGQSSEGRNCSSGSKRKQSGQYYETVKVIRNAMEFANDQLKAIVDWPKEKRATEVKLHVEVVKQLQDIPELRSQDKVKLMQII
        MYS+ + M  DEM  TR  QSSEGRNCSSGSKRK  GQ+YE V VI N ME  NDQLKAI +W KEKRATEV+LHVEVVKQLQDI ELR++D+VKLMQII
Subjt:  MYSR-VGMSLDEMFRTRAGQSSEGRNCSSGSKRKQSGQYYETVKVIRNAMEFANDQLKAIVDWPKEKRATEVKLHVEVVKQLQDIPELRSQDKVKLMQII

Query:  FRSVDNIDGFLSIPTKLKLEYYNVLLEENV
        F  VD+I+GFLS PTKLKLEY  VLLE+NV
Subjt:  FRSVDNIDGFLSIPTKLKLEYYNVLLEENV

A0A1S3B4L3 uncharacterized protein LOC1034859531.9e-3969.23Show/hide
Query:  MYSR-VGMSLDEMFRTRAGQSSEGRNCSSGSKRKQSGQYYETVKVIRNAMEFANDQLKAIVDWPKEKRATEVKLHVEVVKQLQDIPELRSQDKVKLMQII
        MYS+ V MS DEMF  RAGQ+SE RNCSS SKRK+  + YETV+VIR+ MEF N+QLKAI DWPKEKRA EV++  +VVKQLQDIP+LRSQD+ KLMQI+
Subjt:  MYSR-VGMSLDEMFRTRAGQSSEGRNCSSGSKRKQSGQYYETVKVIRNAMEFANDQLKAIVDWPKEKRATEVKLHVEVVKQLQDIPELRSQDKVKLMQII

Query:  FRSVDNIDGFLSIPTKLKLEYYNVLLEENV
        FRS++ I+GFLSIPT+LKLEY N+LL+  V
Subjt:  FRSVDNIDGFLSIPTKLKLEYYNVLLEENV

A0A5A7SQU2 Putative nuclease HARBI15.0e-4070.08Show/hide
Query:  MYSR-VGMSLDEMFRTRAGQSSEGRNCSSGSKRKQSGQYYETVKVIRNAMEFANDQLKAIVDWPKEKRATEVKLHVEVVKQLQDIPELRSQDKVKLMQII
        MYS+ V MS DEMF  RAGQ+SE +NCSSGSKRKQ  ++YETV+VI++A+EF NDQLKAI +WPKEKRATEV+L  EV+KQLQDIPEL+S+D+ KL+QI+
Subjt:  MYSR-VGMSLDEMFRTRAGQSSEGRNCSSGSKRKQSGQYYETVKVIRNAMEFANDQLKAIVDWPKEKRATEVKLHVEVVKQLQDIPELRSQDKVKLMQII

Query:  FRSVDNIDGFLSIPTKLKLEYYNVLLE
        FRSV+ I+GFLSIPT+ KLEY N+LL+
Subjt:  FRSVDNIDGFLSIPTKLKLEYYNVLLE

A0A5A7U0H7 Retrotransposon protein1.9e-3969.23Show/hide
Query:  MYSR-VGMSLDEMFRTRAGQSSEGRNCSSGSKRKQSGQYYETVKVIRNAMEFANDQLKAIVDWPKEKRATEVKLHVEVVKQLQDIPELRSQDKVKLMQII
        MYS+ V MS DEMF  RAGQ+SE RNCSS SKRK+  + YETV+VIR+ MEF N+QLKAI DWPKEKRA EV++  +VVKQLQDIP+LRSQD+ KLMQI+
Subjt:  MYSR-VGMSLDEMFRTRAGQSSEGRNCSSGSKRKQSGQYYETVKVIRNAMEFANDQLKAIVDWPKEKRATEVKLHVEVVKQLQDIPELRSQDKVKLMQII

Query:  FRSVDNIDGFLSIPTKLKLEYYNVLLEENV
        FRS++ I+GFLSIPT+LKLEY N+LL+  V
Subjt:  FRSVDNIDGFLSIPTKLKLEYYNVLLEENV

A0A5D3BZU3 Retrotransposon protein2.0e-4172.31Show/hide
Query:  MYSR-VGMSLDEMFRTRAGQSSEGRNCSSGSKRKQSGQYYETVKVIRNAMEFANDQLKAIVDWPKEKRATEVKLHVEVVKQLQDIPELRSQDKVKLMQII
        +YS+ V MSLDE+F  RAGQ+SE RN SSGSKRK+  ++YE V+VI +A EF NDQLK I DWPKEKRATEV+L  EVVKQLQDIP+LRSQD+ KLMQI+
Subjt:  MYSR-VGMSLDEMFRTRAGQSSEGRNCSSGSKRKQSGQYYETVKVIRNAMEFANDQLKAIVDWPKEKRATEVKLHVEVVKQLQDIPELRSQDKVKLMQII

Query:  FRSVDNIDGFLSIPTKLKLEYYNVLLEENV
        FRSV+ I+GFLSIPTKLKLEY N+LLE NV
Subjt:  FRSVDNIDGFLSIPTKLKLEYYNVLLEENV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTATAGCCGAGTGGGTATGTCACTAGATGAGATGTTTAGAACACGTGCAGGTCAATCAAGTGAAGGAAGAAATTGTTCAAGTGGAAGTAAGAGGAAACAAAGTGGCCA
ATATTATGAAACGGTAAAGGTGATCAGGAATGCAATGGAATTTGCAAATGATCAATTAAAAGCAATTGTAGATTGGCCAAAAGAAAAACGTGCAACAGAGGTCAAATTGC
ATGTTGAAGTTGTGAAACAACTACAAGATATCCCTGAACTACGGAGTCAAGATAAGGTAAAACTTATGCAAATCATATTCCGTAGTGTGGATAATATAGATGGGTTCTTG
TCGATTCCAACAAAACTTAAATTGGAGTATTACAATGTTCTCTTAGAAGAAAATGTTTGA
mRNA sequenceShow/hide mRNA sequence
ATGTATAGCCGAGTGGGTATGTCACTAGATGAGATGTTTAGAACACGTGCAGGTCAATCAAGTGAAGGAAGAAATTGTTCAAGTGGAAGTAAGAGGAAACAAAGTGGCCA
ATATTATGAAACGGTAAAGGTGATCAGGAATGCAATGGAATTTGCAAATGATCAATTAAAAGCAATTGTAGATTGGCCAAAAGAAAAACGTGCAACAGAGGTCAAATTGC
ATGTTGAAGTTGTGAAACAACTACAAGATATCCCTGAACTACGGAGTCAAGATAAGGTAAAACTTATGCAAATCATATTCCGTAGTGTGGATAATATAGATGGGTTCTTG
TCGATTCCAACAAAACTTAAATTGGAGTATTACAATGTTCTCTTAGAAGAAAATGTTTGA
Protein sequenceShow/hide protein sequence
MYSRVGMSLDEMFRTRAGQSSEGRNCSSGSKRKQSGQYYETVKVIRNAMEFANDQLKAIVDWPKEKRATEVKLHVEVVKQLQDIPELRSQDKVKLMQIIFRSVDNIDGFL
SIPTKLKLEYYNVLLEENV