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PI0016056 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0016056
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrotrans_gag domain-containing protein
Genome locationchr07:18178803..18179132
RNA-Seq ExpressionPI0016056
SyntenyPI0016056
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0043551.1 uncharacterized protein E6C27_scaffold335G00530 [Cucumis melo var. makuwa]2.4e-1850.93Show/hide
Query:  TITEYEKKFTEISKYVITFILDEEDRCKCFERGLRTTIQALVTASAKWSNFSKLVEVAMRVGKCLVEGEEERSLEENESSPKVSKEKEKESDEGASKWAK
        T+ +Y KKF E+++Y ITFI++EED+C  FE GLRT+I+ALVT  A   +FSKLVE A+R+ KCLVE +EE+ +E  ESSP + + +EKE ++ A KW  
Subjt:  TITEYEKKFTEISKYVITFILDEEDRCKCFERGLRTTIQALVTASAKWSNFSKLVEVAMRVGKCLVEGEEERSLEENESSPKVSKEKEKESDEGASKWAK

Query:  SHFSKRSY
          F + S+
Subjt:  SHFSKRSY
KAA0043557.1 zf-CCHC domain-containing protein [Cucumis melo var. makuwa]1.7e-1952.78Show/hide
Query:  TITEYEKKFTEISKYVITFILDEEDRCKCFERGLRTTIQALVTASAKWSNFSKLVEVAMRVGKCLVEGEEERSLEENESSPKVSKEKEKESDEGASKWAK
        T+ EY KKF E+++YVITFI++EED+C  FE GLRT+I+ALVTA     +FSKLVE A+R+ KCLVE +EE+ +E  ESSP + + +EKE ++ A KW  
Subjt:  TITEYEKKFTEISKYVITFILDEEDRCKCFERGLRTTIQALVTASAKWSNFSKLVEVAMRVGKCLVEGEEERSLEENESSPKVSKEKEKESDEGASKWAK

Query:  SHFSKRSY
         +F + S+
Subjt:  SHFSKRSY
KAA0054739.1 uncharacterized protein E6C27_scaffold437G00090 [Cucumis melo var. makuwa]2.4e-2154.72Show/hide
Query:  TITEYEKKFTEISKYVITFILDEEDRCKCFERGLRTTIQALVTASAKWSNFSKLVEVAMRVGKCLVEGEEERSLEENESSPKVSKEKEKESDEGASKWAK
        T+  YEKKFT++ KY ITFILDEE +CK F+  LRT  +A+VT+SA WS+FSKLVE  +   KCL EG+EE+ L+E +SSP++ + KEK   +   +WAK
Subjt:  TITEYEKKFTEISKYVITFILDEEDRCKCFERGLRTTIQALVTASAKWSNFSKLVEVAMRVGKCLVEGEEERSLEENESSPKVSKEKEKESDEGASKWAK

Query:  SHFSKR
        S FS+R
Subjt:  SHFSKR
TYJ99705.1 uncharacterized protein E5676_scaffold562G001040 [Cucumis melo var. makuwa]1.4e-2154.72Show/hide
Query:  TITEYEKKFTEISKYVITFILDEEDRCKCFERGLRTTIQALVTASAKWSNFSKLVEVAMRVGKCLVEGEEERSLEENESSPKVSKEKEKESDEGASKWAK
        T+  YEKKFT++ KY ITFILDEE +CK F+  LRT  +A+VT+SA WS+FSKLVE  +   KCL EG+EE+ L+E +SSP++ + KEK   +   +WAK
Subjt:  TITEYEKKFTEISKYVITFILDEEDRCKCFERGLRTTIQALVTASAKWSNFSKLVEVAMRVGKCLVEGEEERSLEENESSPKVSKEKEKESDEGASKWAK

Query:  SHFSKR
        S FS+R
Subjt:  SHFSKR
TYK02484.1 Retrotransposon gag protein [Cucumis melo var. makuwa]6.4e-1952.78Show/hide
Query:  TITEYEKKFTEISKYVITFILDEEDRCKCFERGLRTTIQALVTASAKWSNFSKLVEVAMRVGKCLVEGEEERSLEENESSPKVSKEKEKESDEGASKWAK
        T+ EY KKF E+++Y ITFI++EED+C  FE GLRT+I+ALVTA A   +FSKLVE A+R+ KCLVE +EE+ +E  ESSP + + +EKE ++ A KW  
Subjt:  TITEYEKKFTEISKYVITFILDEEDRCKCFERGLRTTIQALVTASAKWSNFSKLVEVAMRVGKCLVEGEEERSLEENESSPKVSKEKEKESDEGASKWAK

Query:  SHFSKRSY
          F + S+
Subjt:  SHFSKRSY
TrEMBL top hitse value%identityAlignment
A0A5A7TP59 Zf-CCHC domain-containing protein8.2e-2052.78Show/hide
Query:  TITEYEKKFTEISKYVITFILDEEDRCKCFERGLRTTIQALVTASAKWSNFSKLVEVAMRVGKCLVEGEEERSLEENESSPKVSKEKEKESDEGASKWAK
        T+ EY KKF E+++YVITFI++EED+C  FE GLRT+I+ALVTA     +FSKLVE A+R+ KCLVE +EE+ +E  ESSP + + +EKE ++ A KW  
Subjt:  TITEYEKKFTEISKYVITFILDEEDRCKCFERGLRTTIQALVTASAKWSNFSKLVEVAMRVGKCLVEGEEERSLEENESSPKVSKEKEKESDEGASKWAK

Query:  SHFSKRSY
         +F + S+
Subjt:  SHFSKRSY
A0A5A7TPS8 Retrotrans_gag domain-containing protein1.2e-1850.93Show/hide
Query:  TITEYEKKFTEISKYVITFILDEEDRCKCFERGLRTTIQALVTASAKWSNFSKLVEVAMRVGKCLVEGEEERSLEENESSPKVSKEKEKESDEGASKWAK
        T+ +Y KKF E+++Y ITFI++EED+C  FE GLRT+I+ALVT  A   +FSKLVE A+R+ KCLVE +EE+ +E  ESSP + + +EKE ++ A KW  
Subjt:  TITEYEKKFTEISKYVITFILDEEDRCKCFERGLRTTIQALVTASAKWSNFSKLVEVAMRVGKCLVEGEEERSLEENESSPKVSKEKEKESDEGASKWAK

Query:  SHFSKRSY
          F + S+
Subjt:  SHFSKRSY
A0A5A7UMQ3 Uncharacterized protein1.1e-2154.72Show/hide
Query:  TITEYEKKFTEISKYVITFILDEEDRCKCFERGLRTTIQALVTASAKWSNFSKLVEVAMRVGKCLVEGEEERSLEENESSPKVSKEKEKESDEGASKWAK
        T+  YEKKFT++ KY ITFILDEE +CK F+  LRT  +A+VT+SA WS+FSKLVE  +   KCL EG+EE+ L+E +SSP++ + KEK   +   +WAK
Subjt:  TITEYEKKFTEISKYVITFILDEEDRCKCFERGLRTTIQALVTASAKWSNFSKLVEVAMRVGKCLVEGEEERSLEENESSPKVSKEKEKESDEGASKWAK

Query:  SHFSKR
        S FS+R
Subjt:  SHFSKR
A0A5D3BN18 Uncharacterized protein6.7e-2254.72Show/hide
Query:  TITEYEKKFTEISKYVITFILDEEDRCKCFERGLRTTIQALVTASAKWSNFSKLVEVAMRVGKCLVEGEEERSLEENESSPKVSKEKEKESDEGASKWAK
        T+  YEKKFT++ KY ITFILDEE +CK F+  LRT  +A+VT+SA WS+FSKLVE  +   KCL EG+EE+ L+E +SSP++ + KEK   +   +WAK
Subjt:  TITEYEKKFTEISKYVITFILDEEDRCKCFERGLRTTIQALVTASAKWSNFSKLVEVAMRVGKCLVEGEEERSLEENESSPKVSKEKEKESDEGASKWAK

Query:  SHFSKR
        S FS+R
Subjt:  SHFSKR
A0A5D3BTI8 Retrotransposon gag protein3.1e-1952.78Show/hide
Query:  TITEYEKKFTEISKYVITFILDEEDRCKCFERGLRTTIQALVTASAKWSNFSKLVEVAMRVGKCLVEGEEERSLEENESSPKVSKEKEKESDEGASKWAK
        T+ EY KKF E+++Y ITFI++EED+C  FE GLRT+I+ALVTA A   +FSKLVE A+R+ KCLVE +EE+ +E  ESSP + + +EKE ++ A KW  
Subjt:  TITEYEKKFTEISKYVITFILDEEDRCKCFERGLRTTIQALVTASAKWSNFSKLVEVAMRVGKCLVEGEEERSLEENESSPKVSKEKEKESDEGASKWAK

Query:  SHFSKRSY
          F + S+
Subjt:  SHFSKRSY
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACTATCACGGAGTATGAGAAGAAGTTTACTGAGATATCAAAGTATGTGATAACCTTTATATTGGACGAGGAAGATAGATGTAAATGTTTTGAACGAGGCTTGAGGAC
AACAATTCAGGCTCTAGTGACAGCAAGTGCGAAGTGGTCGAATTTTTCTAAGTTGGTTGAGGTAGCCATGCGAGTTGGAAAGTGTCTGGTCGAAGGAGAAGAAGAGAGAA
GTTTGGAAGAAAATGAGTCAAGTCCGAAGGTGAGTAAAGAAAAAGAGAAGGAAAGTGACGAGGGAGCAAGTAAGTGGGCTAAATCTCACTTTAGCAAAAGATCGTATTAA
mRNA sequenceShow/hide mRNA sequence
ATGACTATCACGGAGTATGAGAAGAAGTTTACTGAGATATCAAAGTATGTGATAACCTTTATATTGGACGAGGAAGATAGATGTAAATGTTTTGAACGAGGCTTGAGGAC
AACAATTCAGGCTCTAGTGACAGCAAGTGCGAAGTGGTCGAATTTTTCTAAGTTGGTTGAGGTAGCCATGCGAGTTGGAAAGTGTCTGGTCGAAGGAGAAGAAGAGAGAA
GTTTGGAAGAAAATGAGTCAAGTCCGAAGGTGAGTAAAGAAAAAGAGAAGGAAAGTGACGAGGGAGCAAGTAAGTGGGCTAAATCTCACTTTAGCAAAAGATCGTATTAA
Protein sequenceShow/hide protein sequence
MTITEYEKKFTEISKYVITFILDEEDRCKCFERGLRTTIQALVTASAKWSNFSKLVEVAMRVGKCLVEGEEERSLEENESSPKVSKEKEKESDEGASKWAKSHFSKRSY