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PI0016111 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0016111
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrotrans_gag domain-containing protein
Genome locationchr03:8927423..8928277
RNA-Seq ExpressionPI0016111
SyntenyPI0016111
Gene Ontology termsGO:0006259 - DNA metabolic process (biological process)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0041284.1 uncharacterized protein E6C27_scaffold128G002760 [Cucumis melo var. makuwa]3.2e-2643.06Show/hide
Query:  AKEFVEDLGRSFKIELKELASTVTTLKALV--------------EVPAPVACLEQHSRQIASNSLQPVANPLH------KAPMPS------------RML
        AKE +ED+GR+F+ ELKELASTVTTLKA V              E      C+E  S+ + SN+     +P        K P P             R  
Subjt:  AKEFVEDLGRSFKIELKELASTVTTLKALV--------------EVPAPVACLEQHSRQIASNSLQPVANPLH------KAPMPS------------RML

Query:  LNCGGTTSNLIESKARILSRHMNNLKASYES------TLFTISKWKY-EEFTTLMLEIEDLSEKDVIFHFKYGLKKWAKVELDHHNMQTLDDVITAVETL
         + G    +  E     L +H     A  ES         T S   Y +EFTTLMLEI DL EK+ +F FKYGLK WAK+ELDH N+QTLDD I  VETL
Subjt:  LNCGGTTSNLIESKARILSRHMNNLKASYES------TLFTISKWKY-EEFTTLMLEIEDLSEKDVIFHFKYGLKKWAKVELDHHNMQTLDDVITAVETL

Query:  VDYSTQQKGKKLGSFK
        VDYS Q KGKK G  K
Subjt:  VDYSTQQKGKKLGSFK

KAA0042140.1 uncharacterized protein E6C27_scaffold67G006290 [Cucumis melo var. makuwa]1.6e-2034.12Show/hide
Query:  AKEFVEDLGRSFKIELKELASTVTTLKALV--------------EVPAPVACLEQHSRQIASN----SLQPVANPLHKAPMPSRMLLNCGGTTSNLIESK
        AKE +ED+GR+F+ ELKELASTVTTLKA V              E      C+E HS+ + SN    S  P  +      +P   + N G   + ++++ 
Subjt:  AKEFVEDLGRSFKIELKELASTVTTLKALV--------------EVPAPVACLEQHSRQIASN----SLQPVANPLHKAPMPSRMLLNCGGTTSNLIESK

Query:  ARILSRHM-------NNLKASYESTLF------------------TISKWK-----------------------------------YEEFTTLMLEIEDL
           L R+        +  + ++  T                     I  W+                                    +EFTTLMLEI DL
Subjt:  ARILSRHM-------NNLKASYESTLF------------------TISKWK-----------------------------------YEEFTTLMLEIEDL

Query:  SEKDVIFHFKYGLKKWAKVELDHHNMQTLDDVITAVETLVDYSTQQKGKKLGSFK
         EK+ +F FK GLK WAK+ELD  N+QTLDD I A ETLVDYS Q KGKK G  K
Subjt:  SEKDVIFHFKYGLKKWAKVELDHHNMQTLDDVITAVETLVDYSTQQKGKKLGSFK

TYK02748.1 uncharacterized protein E5676_scaffold145G00020 [Cucumis melo var. makuwa]3.2e-2643.06Show/hide
Query:  AKEFVEDLGRSFKIELKELASTVTTLKALV--------------EVPAPVACLEQHSRQIASNSLQPVANPLH------KAPMPS------------RML
        AKE +ED+GR+F+ ELKELASTVTTLKA V              E      C+E  S+ + SN+     +P        K P P             R  
Subjt:  AKEFVEDLGRSFKIELKELASTVTTLKALV--------------EVPAPVACLEQHSRQIASNSLQPVANPLH------KAPMPS------------RML

Query:  LNCGGTTSNLIESKARILSRHMNNLKASYES------TLFTISKWKY-EEFTTLMLEIEDLSEKDVIFHFKYGLKKWAKVELDHHNMQTLDDVITAVETL
         + G    +  E     L +H     A  ES         T S   Y +EFTTLMLEI DL EK+ +F FKYGLK WAK+ELDH N+QTLDD I  VETL
Subjt:  LNCGGTTSNLIESKARILSRHMNNLKASYES------TLFTISKWKY-EEFTTLMLEIEDLSEKDVIFHFKYGLKKWAKVELDHHNMQTLDDVITAVETL

Query:  VDYSTQQKGKKLGSFK
        VDYS Q KGKK G  K
Subjt:  VDYSTQQKGKKLGSFK

XP_008442289.1 PREDICTED: uncharacterized protein LOC103486198 [Cucumis melo]3.2e-2643.06Show/hide
Query:  AKEFVEDLGRSFKIELKELASTVTTLKALV--------------EVPAPVACLEQHSRQIASNSLQPVANPLH------KAPMPS------------RML
        AKE +ED+GR+F+ ELKELASTVTTLKA V              E      C+E  S+ + SN+     +P        K P P             R  
Subjt:  AKEFVEDLGRSFKIELKELASTVTTLKALV--------------EVPAPVACLEQHSRQIASNSLQPVANPLH------KAPMPS------------RML

Query:  LNCGGTTSNLIESKARILSRHMNNLKASYES------TLFTISKWKY-EEFTTLMLEIEDLSEKDVIFHFKYGLKKWAKVELDHHNMQTLDDVITAVETL
         + G    +  E     L +H     A  ES         T S   Y +EFTTLMLEI DL EK+ +F FKYGLK WAK+ELDH N+QTLDD I  VETL
Subjt:  LNCGGTTSNLIESKARILSRHMNNLKASYES------TLFTISKWKY-EEFTTLMLEIEDLSEKDVIFHFKYGLKKWAKVELDHHNMQTLDDVITAVETL

Query:  VDYSTQQKGKKLGSFK
        VDYS Q KGKK G  K
Subjt:  VDYSTQQKGKKLGSFK

XP_008446938.1 PREDICTED: uncharacterized protein LOC103489499 [Cucumis melo]1.6e-2036.86Show/hide
Query:  AKEFVEDLGRSFKIELKELASTVTTLKALV--------------EVPAPVACLEQHSRQIASN----SLQPVANPLHKAPMPSRMLLNCGGTTSNLIES-
        AKE +ED+GR+F+ ELKELASTVTTLKA V              E      C+E  S+ + SN    S  P  +      +P   + N G   S ++++ 
Subjt:  AKEFVEDLGRSFKIELKELASTVTTLKALV--------------EVPAPVACLEQHSRQIASN----SLQPVANPLHKAPMPSRMLLNCGGTTSNLIES-

Query:  ----------------KARI------------------------------------LSRHMNNLKASYES------TLFTISKWKY-EEFTTLMLEIEDL
                        +ARI                                    L +H     A  ES         T S   Y +EFTTLMLEI DL
Subjt:  ----------------KARI------------------------------------LSRHMNNLKASYES------TLFTISKWKY-EEFTTLMLEIEDL

Query:  SEKDVIFHFKYGLKKWAKVELDHHNMQTLDDVITAVETLVDYSTQQKGKKLGSFK
         EK+ +F FK GLK WAK+ELD  N+QTLDD I A ETLVDYSTQ KGKK G  K
Subjt:  SEKDVIFHFKYGLKKWAKVELDHHNMQTLDDVITAVETLVDYSTQQKGKKLGSFK

TrEMBL top hitse value%identityAlignment
A0A1S3B5C5 uncharacterized protein LOC1034861981.6e-2643.06Show/hide
Query:  AKEFVEDLGRSFKIELKELASTVTTLKALV--------------EVPAPVACLEQHSRQIASNSLQPVANPLH------KAPMPS------------RML
        AKE +ED+GR+F+ ELKELASTVTTLKA V              E      C+E  S+ + SN+     +P        K P P             R  
Subjt:  AKEFVEDLGRSFKIELKELASTVTTLKALV--------------EVPAPVACLEQHSRQIASNSLQPVANPLH------KAPMPS------------RML

Query:  LNCGGTTSNLIESKARILSRHMNNLKASYES------TLFTISKWKY-EEFTTLMLEIEDLSEKDVIFHFKYGLKKWAKVELDHHNMQTLDDVITAVETL
         + G    +  E     L +H     A  ES         T S   Y +EFTTLMLEI DL EK+ +F FKYGLK WAK+ELDH N+QTLDD I  VETL
Subjt:  LNCGGTTSNLIESKARILSRHMNNLKASYES------TLFTISKWKY-EEFTTLMLEIEDLSEKDVIFHFKYGLKKWAKVELDHHNMQTLDDVITAVETL

Query:  VDYSTQQKGKKLGSFK
        VDYS Q KGKK G  K
Subjt:  VDYSTQQKGKKLGSFK

A0A5A7TCV2 Integrase catalytic domain-containing protein1.6e-2643.06Show/hide
Query:  AKEFVEDLGRSFKIELKELASTVTTLKALV--------------EVPAPVACLEQHSRQIASNSLQPVANPLH------KAPMPS------------RML
        AKE +ED+GR+F+ ELKELASTVTTLKA V              E      C+E  S+ + SN+     +P        K P P             R  
Subjt:  AKEFVEDLGRSFKIELKELASTVTTLKALV--------------EVPAPVACLEQHSRQIASNSLQPVANPLH------KAPMPS------------RML

Query:  LNCGGTTSNLIESKARILSRHMNNLKASYES------TLFTISKWKY-EEFTTLMLEIEDLSEKDVIFHFKYGLKKWAKVELDHHNMQTLDDVITAVETL
         + G    +  E     L +H     A  ES         T S   Y +EFTTLMLEI DL EK+ +F FKYGLK WAK+ELDH N+QTLDD I  VETL
Subjt:  LNCGGTTSNLIESKARILSRHMNNLKASYES------TLFTISKWKY-EEFTTLMLEIEDLSEKDVIFHFKYGLKKWAKVELDHHNMQTLDDVITAVETL

Query:  VDYSTQQKGKKLGSFK
        VDYS Q KGKK G  K
Subjt:  VDYSTQQKGKKLGSFK

A0A5A7TFP3 Retrotrans_gag domain-containing protein7.5e-2134.12Show/hide
Query:  AKEFVEDLGRSFKIELKELASTVTTLKALV--------------EVPAPVACLEQHSRQIASN----SLQPVANPLHKAPMPSRMLLNCGGTTSNLIESK
        AKE +ED+GR+F+ ELKELASTVTTLKA V              E      C+E HS+ + SN    S  P  +      +P   + N G   + ++++ 
Subjt:  AKEFVEDLGRSFKIELKELASTVTTLKALV--------------EVPAPVACLEQHSRQIASN----SLQPVANPLHKAPMPSRMLLNCGGTTSNLIESK

Query:  ARILSRHM-------NNLKASYESTLF------------------TISKWK-----------------------------------YEEFTTLMLEIEDL
           L R+        +  + ++  T                     I  W+                                    +EFTTLMLEI DL
Subjt:  ARILSRHM-------NNLKASYESTLF------------------TISKWK-----------------------------------YEEFTTLMLEIEDL

Query:  SEKDVIFHFKYGLKKWAKVELDHHNMQTLDDVITAVETLVDYSTQQKGKKLGSFK
         EK+ +F FK GLK WAK+ELD  N+QTLDD I A ETLVDYS Q KGKK G  K
Subjt:  SEKDVIFHFKYGLKKWAKVELDHHNMQTLDDVITAVETLVDYSTQQKGKKLGSFK

A0A5D3BUU0 Integrase catalytic domain-containing protein1.6e-2643.06Show/hide
Query:  AKEFVEDLGRSFKIELKELASTVTTLKALV--------------EVPAPVACLEQHSRQIASNSLQPVANPLH------KAPMPS------------RML
        AKE +ED+GR+F+ ELKELASTVTTLKA V              E      C+E  S+ + SN+     +P        K P P             R  
Subjt:  AKEFVEDLGRSFKIELKELASTVTTLKALV--------------EVPAPVACLEQHSRQIASNSLQPVANPLH------KAPMPS------------RML

Query:  LNCGGTTSNLIESKARILSRHMNNLKASYES------TLFTISKWKY-EEFTTLMLEIEDLSEKDVIFHFKYGLKKWAKVELDHHNMQTLDDVITAVETL
         + G    +  E     L +H     A  ES         T S   Y +EFTTLMLEI DL EK+ +F FKYGLK WAK+ELDH N+QTLDD I  VETL
Subjt:  LNCGGTTSNLIESKARILSRHMNNLKASYES------TLFTISKWKY-EEFTTLMLEIEDLSEKDVIFHFKYGLKKWAKVELDHHNMQTLDDVITAVETL

Query:  VDYSTQQKGKKLGSFK
        VDYS Q KGKK G  K
Subjt:  VDYSTQQKGKKLGSFK

A0A5D3D3V4 Retrotrans_gag domain-containing protein7.5e-2134.12Show/hide
Query:  AKEFVEDLGRSFKIELKELASTVTTLKALV--------------EVPAPVACLEQHSRQIASN----SLQPVANPLHKAPMPSRMLLNCGGTTSNLIESK
        AKE +ED+GR+F+ ELKELASTVTTLKA V              E      C+E HS+ + SN    S  P  +      +P   + N G   + ++++ 
Subjt:  AKEFVEDLGRSFKIELKELASTVTTLKALV--------------EVPAPVACLEQHSRQIASN----SLQPVANPLHKAPMPSRMLLNCGGTTSNLIESK

Query:  ARILSRHM-------NNLKASYESTLF------------------TISKWK-----------------------------------YEEFTTLMLEIEDL
           L R+        +  + ++  T                     I  W+                                    +EFTTLMLEI DL
Subjt:  ARILSRHM-------NNLKASYESTLF------------------TISKWK-----------------------------------YEEFTTLMLEIEDL

Query:  SEKDVIFHFKYGLKKWAKVELDHHNMQTLDDVITAVETLVDYSTQQKGKKLGSFK
         EK+ +F FK GLK WAK+ELD  N+QTLDD I A ETLVDYS Q KGKK G  K
Subjt:  SEKDVIFHFKYGLKKWAKVELDHHNMQTLDDVITAVETLVDYSTQQKGKKLGSFK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATGGCTGCCAAGGAGTTTGTCGAGGATCTTGGGCGATCATTCAAAATAGAACTAAAAGAGTTAGCATCAACCGTGACCACTCTGAAGGCACTTGTCGAAGTGCCTGC
ACCAGTGGCATGCTTGGAGCAGCATTCAAGACAGATAGCATCTAATTCACTTCAACCAGTGGCCAACCCGCTGCATAAGGCACCTATGCCATCAAGGATGTTGCTCAATT
GTGGTGGCACTACAAGTAACTTGATTGAGAGCAAGGCCAGAATACTGTCCAGACATATGAACAATTTAAAAGCGAGCTACGAAAGCACTTTGTTCACCATTTCGAAATGG
AAGTATGAGGAGTTTACTACGCTCATGTTGGAGATAGAAGACTTGTCCGAGAAAGATGTCATTTTCCACTTCAAATACGGGTTAAAGAAATGGGCCAAGGTAGAGTTAGA
CCACCACAACATGCAAACTCTAGATGATGTCATTACCGCAGTAGAGACCCTTGTCGATTACTCTACCCAACAAAAGGGGAAGAAGCTTGGTTCGTTCAAAGCTAGAATCT
ACAAAAGTGAAAAATAA
mRNA sequenceShow/hide mRNA sequence
ATGATGGCTGCCAAGGAGTTTGTCGAGGATCTTGGGCGATCATTCAAAATAGAACTAAAAGAGTTAGCATCAACCGTGACCACTCTGAAGGCACTTGTCGAAGTGCCTGC
ACCAGTGGCATGCTTGGAGCAGCATTCAAGACAGATAGCATCTAATTCACTTCAACCAGTGGCCAACCCGCTGCATAAGGCACCTATGCCATCAAGGATGTTGCTCAATT
GTGGTGGCACTACAAGTAACTTGATTGAGAGCAAGGCCAGAATACTGTCCAGACATATGAACAATTTAAAAGCGAGCTACGAAAGCACTTTGTTCACCATTTCGAAATGG
AAGTATGAGGAGTTTACTACGCTCATGTTGGAGATAGAAGACTTGTCCGAGAAAGATGTCATTTTCCACTTCAAATACGGGTTAAAGAAATGGGCCAAGGTAGAGTTAGA
CCACCACAACATGCAAACTCTAGATGATGTCATTACCGCAGTAGAGACCCTTGTCGATTACTCTACCCAACAAAAGGGGAAGAAGCTTGGTTCGTTCAAAGCTAGAATCT
ACAAAAGTGAAAAATAA
Protein sequenceShow/hide protein sequence
MMAAKEFVEDLGRSFKIELKELASTVTTLKALVEVPAPVACLEQHSRQIASNSLQPVANPLHKAPMPSRMLLNCGGTTSNLIESKARILSRHMNNLKASYESTLFTISKW
KYEEFTTLMLEIEDLSEKDVIFHFKYGLKKWAKVELDHHNMQTLDDVITAVETLVDYSTQQKGKKLGSFKARIYKSEK