; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

PI0016115 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0016115
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrotransposon gag protein
Genome locationchr03:9676865..9680192
RNA-Seq ExpressionPI0016115
SyntenyPI0016115
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
ADN33993.1 retrotransposon gag protein [Cucumis melo subsp. melo]4.3e-5573.24Show/hide
Query:  MTTLLTSFVQGGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNADWRDNSNLKWGNDAQRPAQATSSSNNQGSNLEDLVKALATNTISFQ
        MTTLLTSFVQG  +KV KCGVC L+GHPNDKCP+++E+ N++RKYDP+GNTYN+ WRDN NL+WGND Q+  QA  +S+NQG+NLED++KALATNT+SFQ
Subjt:  MTTLLTSFVQGGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNADWRDNSNLKWGNDAQRPAQATSSSNNQGSNLEDLVKALATNTISFQ

Query:  NEMKQQMSQLTNAISKLEGKGKLPAQPDHANVSAISLRSGVV
         EMKQQM+QLT AISK++GKGKLPAQPD+ANVSAISLRSG +
Subjt:  NEMKQQMSQLTNAISKLEGKGKLPAQPDHANVSAISLRSGVV

KAA0047407.1 retrotransposon gag protein [Cucumis melo var. makuwa]9.6e-5572.54Show/hide
Query:  MTTLLTSFVQGGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNADWRDNSNLKWGNDAQRPAQATSSSNNQGSNLEDLVKALATNTISFQ
        MTTLLTSFVQG  +KV KCGVCGL+GHPNDKCP+++E+ N++RKYDPHGNTYN+ WRDN NL+WGND Q+  QA S+S+NQG+NLED++KALATNT+SFQ
Subjt:  MTTLLTSFVQGGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNADWRDNSNLKWGNDAQRPAQATSSSNNQGSNLEDLVKALATNTISFQ

Query:  NEMKQQMSQLTNAISKLEGKGKLPAQPDHANVSAISLRSGVV
         EMKQQM+QLT AISK++GKGKL AQ ++ANVSA+SLRSG +
Subjt:  NEMKQQMSQLTNAISKLEGKGKLPAQPDHANVSAISLRSGVV

KAA0065554.1 retrotransposon gag protein [Cucumis melo var. makuwa]2.8e-5472.54Show/hide
Query:  MTTLLTSFVQGGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNADWRDNSNLKWGNDAQRPAQATSSSNNQGSNLEDLVKALATNTISFQ
        MTTLLTSFVQG  +KV KCGVCGL+GHPNDK P+++E+ N++R+YDPHGNTYN+ WRDN  L+WGND Q+  QA S+S+NQG+NLED++KALA NT+SFQ
Subjt:  MTTLLTSFVQGGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNADWRDNSNLKWGNDAQRPAQATSSSNNQGSNLEDLVKALATNTISFQ

Query:  NEMKQQMSQLTNAISKLEGKGKLPAQPDHANVSAISLRSGVV
         EMKQQM+QLT AISK++GKGKLPAQP+HANVSAISLRSG +
Subjt:  NEMKQQMSQLTNAISKLEGKGKLPAQPDHANVSAISLRSGVV

TYK07549.1 retrotransposon gag protein [Cucumis melo var. makuwa]1.5e-5573.94Show/hide
Query:  MTTLLTSFVQGGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNADWRDNSNLKWGNDAQRPAQATSSSNNQGSNLEDLVKALATNTISFQ
        MTTLLTSFVQG   KV KCGVCGL+GHPNDKCP ++E+ N++R+YDPH NTYN+ WRDN NL+WGND Q+  QA S+S+NQG+NLED++KALATNT+SFQ
Subjt:  MTTLLTSFVQGGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNADWRDNSNLKWGNDAQRPAQATSSSNNQGSNLEDLVKALATNTISFQ

Query:  NEMKQQMSQLTNAISKLEGKGKLPAQPDHANVSAISLRSGVV
         +MKQQM+QLT AISK++GKGKLPAQPDHANVSAISLRSG +
Subjt:  NEMKQQMSQLTNAISKLEGKGKLPAQPDHANVSAISLRSGVV

TYK10613.1 retrotransposon gag protein [Cucumis melo var. makuwa]8.6e-5673.94Show/hide
Query:  MTTLLTSFVQGGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNADWRDNSNLKWGNDAQRPAQATSSSNNQGSNLEDLVKALATNTISFQ
        MTTLLTSFVQG   KV KCGVCGL+GHPNDKCP+++E+ N++R+YDPHGNTYN  WRD  NL+WGND Q   QA S+S+NQG+NLED++KAL TNT+SFQ
Subjt:  MTTLLTSFVQGGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNADWRDNSNLKWGNDAQRPAQATSSSNNQGSNLEDLVKALATNTISFQ

Query:  NEMKQQMSQLTNAISKLEGKGKLPAQPDHANVSAISLRSGVV
         EMKQQM+QLT AISK++GKGKLPAQPDHANVSAISLRSG +
Subjt:  NEMKQQMSQLTNAISKLEGKGKLPAQPDHANVSAISLRSGVV

TrEMBL top hitse value%identityAlignment
A0A5D3CB46 Retrotransposon gag protein7.1e-5673.94Show/hide
Query:  MTTLLTSFVQGGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNADWRDNSNLKWGNDAQRPAQATSSSNNQGSNLEDLVKALATNTISFQ
        MTTLLTSFVQG   KV KCGVCGL+GHPNDKCP ++E+ N++R+YDPH NTYN+ WRDN NL+WGND Q+  QA S+S+NQG+NLED++KALATNT+SFQ
Subjt:  MTTLLTSFVQGGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNADWRDNSNLKWGNDAQRPAQATSSSNNQGSNLEDLVKALATNTISFQ

Query:  NEMKQQMSQLTNAISKLEGKGKLPAQPDHANVSAISLRSGVV
         +MKQQM+QLT AISK++GKGKLPAQPDHANVSAISLRSG +
Subjt:  NEMKQQMSQLTNAISKLEGKGKLPAQPDHANVSAISLRSGVV

A0A5D3CFE7 Retrotransposon gag protein4.2e-5673.94Show/hide
Query:  MTTLLTSFVQGGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNADWRDNSNLKWGNDAQRPAQATSSSNNQGSNLEDLVKALATNTISFQ
        MTTLLTSFVQG   KV KCGVCGL+GHPNDKCP+++E+ N++R+YDPHGNTYN  WRD  NL+WGND Q   QA S+S+NQG+NLED++KAL TNT+SFQ
Subjt:  MTTLLTSFVQGGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNADWRDNSNLKWGNDAQRPAQATSSSNNQGSNLEDLVKALATNTISFQ

Query:  NEMKQQMSQLTNAISKLEGKGKLPAQPDHANVSAISLRSGVV
         EMKQQM+QLT AISK++GKGKLPAQPDHANVSAISLRSG +
Subjt:  NEMKQQMSQLTNAISKLEGKGKLPAQPDHANVSAISLRSGVV

A0A5D3CRR8 Retrotransposon gag protein4.6e-5572.54Show/hide
Query:  MTTLLTSFVQGGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNADWRDNSNLKWGNDAQRPAQATSSSNNQGSNLEDLVKALATNTISFQ
        MTTLLTSFVQG  +KV KCGVCGL+GHPNDKCP+++E+ N++RKYDPHGNTYN+ WRDN NL+WGND Q+  QA S+S+NQG+NLED++KALATNT+SFQ
Subjt:  MTTLLTSFVQGGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNADWRDNSNLKWGNDAQRPAQATSSSNNQGSNLEDLVKALATNTISFQ

Query:  NEMKQQMSQLTNAISKLEGKGKLPAQPDHANVSAISLRSGVV
         EMKQQM+QLT AISK++GKGKL AQ ++ANVSA+SLRSG +
Subjt:  NEMKQQMSQLTNAISKLEGKGKLPAQPDHANVSAISLRSGVV

A0A5D3E1D2 Retrotransposon gag protein1.3e-5472.54Show/hide
Query:  MTTLLTSFVQGGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNADWRDNSNLKWGNDAQRPAQATSSSNNQGSNLEDLVKALATNTISFQ
        MTTLLTSFVQG  +KV KCGVCGL+GHPNDK P+++E+ N++R+YDPHGNTYN+ WRDN  L+WGND Q+  QA S+S+NQG+NLED++KALA NT+SFQ
Subjt:  MTTLLTSFVQGGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNADWRDNSNLKWGNDAQRPAQATSSSNNQGSNLEDLVKALATNTISFQ

Query:  NEMKQQMSQLTNAISKLEGKGKLPAQPDHANVSAISLRSGVV
         EMKQQM+QLT AISK++GKGKLPAQP+HANVSAISLRSG +
Subjt:  NEMKQQMSQLTNAISKLEGKGKLPAQPDHANVSAISLRSGVV

E5GBZ4 Retrotransposon gag protein2.1e-5573.24Show/hide
Query:  MTTLLTSFVQGGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNADWRDNSNLKWGNDAQRPAQATSSSNNQGSNLEDLVKALATNTISFQ
        MTTLLTSFVQG  +KV KCGVC L+GHPNDKCP+++E+ N++RKYDP+GNTYN+ WRDN NL+WGND Q+  QA  +S+NQG+NLED++KALATNT+SFQ
Subjt:  MTTLLTSFVQGGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNADWRDNSNLKWGNDAQRPAQATSSSNNQGSNLEDLVKALATNTISFQ

Query:  NEMKQQMSQLTNAISKLEGKGKLPAQPDHANVSAISLRSGVV
         EMKQQM+QLT AISK++GKGKLPAQPD+ANVSAISLRSG +
Subjt:  NEMKQQMSQLTNAISKLEGKGKLPAQPDHANVSAISLRSGVV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACTACATTGCTTACTTCTTTTGTACAAGGTGGAAATGTGAAAGTTGCAAAATGTGGAGTTTGTGGTCTCATTGGACATCCTAATGACAAGTGTCCCGACCTCGTGGA
AGAGGCAAATGTCATTAGGAAGTACGATCCTCATGGAAACACTTACAATGCCGATTGGAGAGACAATTCTAACCTTAAATGGGGAAATGACGCCCAACGACCCGCACAAG
CAACTTCATCCTCAAATAATCAAGGTAGTAATTTGGAAGATTTGGTAAAAGCTCTTGCTACCAACACAATTTCTTTCCAAAATGAAATGAAGCAACAAATGTCCCAATTG
ACCAACGCAATAAGCAAACTAGAAGGTAAAGGCAAGCTTCCAGCTCAGCCTGATCACGCAAATGTAAGTGCCATCTCACTTAGAAGCGGCGTTGTAGAAAAAGCTATGCT
AAGAGGAAGAGGAAGAGGTAGAGGTAGAAGTGTAAGTAGAAGTAGAACACGAGAGTCTACAAAGTCGACAATGGATAATTCAACAGCACATTCTGTTAATCCAGGAGCAA
GGCGAGCTCTGGAAGATGAGTTGTATGATAGAGTAGCTCAGCGGATGATTGATGGTTTGGCGAAAGATCCTGAGAAAAAGTTTCGAATAGAGCATTTGAAGTCGTTAGGA
GCACAAGAGTTTGCTGGAATAGTAGATCCTGAAGAAGCGAAGAGTTGGATTAAGACGCTTGAGAAGTGTTTCTAG
mRNA sequenceShow/hide mRNA sequence
ATGACTACATTGCTTACTTCTTTTGTACAAGGTGGAAATGTGAAAGTTGCAAAATGTGGAGTTTGTGGTCTCATTGGACATCCTAATGACAAGTGTCCCGACCTCGTGGA
AGAGGCAAATGTCATTAGGAAGTACGATCCTCATGGAAACACTTACAATGCCGATTGGAGAGACAATTCTAACCTTAAATGGGGAAATGACGCCCAACGACCCGCACAAG
CAACTTCATCCTCAAATAATCAAGGTAGTAATTTGGAAGATTTGGTAAAAGCTCTTGCTACCAACACAATTTCTTTCCAAAATGAAATGAAGCAACAAATGTCCCAATTG
ACCAACGCAATAAGCAAACTAGAAGGTAAAGGCAAGCTTCCAGCTCAGCCTGATCACGCAAATGTAAGTGCCATCTCACTTAGAAGCGGCGTTGTAGAAAAAGCTATGCT
AAGAGGAAGAGGAAGAGGTAGAGGTAGAAGTGTAAGTAGAAGTAGAACACGAGAGTCTACAAAGTCGACAATGGATAATTCAACAGCACATTCTGTTAATCCAGGAGCAA
GGCGAGCTCTGGAAGATGAGTTGTATGATAGAGTAGCTCAGCGGATGATTGATGGTTTGGCGAAAGATCCTGAGAAAAAGTTTCGAATAGAGCATTTGAAGTCGTTAGGA
GCACAAGAGTTTGCTGGAATAGTAGATCCTGAAGAAGCGAAGAGTTGGATTAAGACGCTTGAGAAGTGTTTCTAG
Protein sequenceShow/hide protein sequence
MTTLLTSFVQGGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNADWRDNSNLKWGNDAQRPAQATSSSNNQGSNLEDLVKALATNTISFQNEMKQQMSQL
TNAISKLEGKGKLPAQPDHANVSAISLRSGVVEKAMLRGRGRGRGRSVSRSRTRESTKSTMDNSTAHSVNPGARRALEDELYDRVAQRMIDGLAKDPEKKFRIEHLKSLG
AQEFAGIVDPEEAKSWIKTLEKCF