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PI0016196 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0016196
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionDNA-directed RNA polymerase II subunit RPB2
Genome locationchr04:33136292..33137396
RNA-Seq ExpressionPI0016196
SyntenyPI0016196
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KGN60447.1 hypothetical protein Csa_002577 [Cucumis sativus]1.2e-1991.8Show/hide
Query:  MGKSFTLIQTIATAGAFSAISFWYGFMFGRESARKDLGDLIQDLRRGTSKSDSSSSETPQS
        MGKSFTLIQT+ATAGAFSAISFWYGFMFGRESARKDLGDLIQDLRRG SK D SSSETP S
Subjt:  MGKSFTLIQTIATAGAFSAISFWYGFMFGRESARKDLGDLIQDLRRGTSKSDSSSSETPQS
XP_004148372.3 uncharacterized protein LOC101212897 [Cucumis sativus]1.2e-1991.8Show/hide
Query:  MGKSFTLIQTIATAGAFSAISFWYGFMFGRESARKDLGDLIQDLRRGTSKSDSSSSETPQS
        MGKSFTLIQT+ATAGAFSAISFWYGFMFGRESARKDLGDLIQDLRRG SK D SSSETP S
Subjt:  MGKSFTLIQTIATAGAFSAISFWYGFMFGRESARKDLGDLIQDLRRGTSKSDSSSSETPQS
XP_016903560.1 PREDICTED: uncharacterized protein LOC103503490 [Cucumis melo]5.0e-2196.72Show/hide
Query:  MGKSFTLIQTIATAGAFSAISFWYGFMFGRESARKDLGDLIQDLRRGTSKSDSSSSETPQS
        MGKSFTLIQTIATAGAFSAISFWYGFMFGRESARKDLGDLIQDLRRG SKSD SSSETPQS
Subjt:  MGKSFTLIQTIATAGAFSAISFWYGFMFGRESARKDLGDLIQDLRRGTSKSDSSSSETPQS
XP_023553989.1 uncharacterized protein LOC111811404 [Cucurbita pepo subsp. pepo]1.0e-1891.67Show/hide
Query:  MGKSFTLIQTIATAGAFSAISFWYGFMFGRESARKDLGDLIQDLRRGTSKSDSSSSETPQ
        M KSFTLIQTIATAGAFSAISFWYGFMFGRESARKDLGDLIQDLRRG+S SDSSS+ TPQ
Subjt:  MGKSFTLIQTIATAGAFSAISFWYGFMFGRESARKDLGDLIQDLRRGTSKSDSSSSETPQ
XP_038888236.1 uncharacterized protein LOC120078095 [Benincasa hispida]2.8e-1991.94Show/hide
Query:  MGKSFTLIQTIATAGAFSAISFWYGFMFGRESARKDLGDLIQDLRRGTSKSD--SSSSETPQ
        M KSFTLIQTIATAGAFSAISFWYGFMFGRESARKDLGDLI DLRRGTS SD  SSSSETPQ
Subjt:  MGKSFTLIQTIATAGAFSAISFWYGFMFGRESARKDLGDLIQDLRRGTSKSD--SSSSETPQ
TrEMBL top hitse value%identityAlignment
A0A0A0LIB2 Uncharacterized protein6.0e-2091.8Show/hide
Query:  MGKSFTLIQTIATAGAFSAISFWYGFMFGRESARKDLGDLIQDLRRGTSKSDSSSSETPQS
        MGKSFTLIQT+ATAGAFSAISFWYGFMFGRESARKDLGDLIQDLRRG SK D SSSETP S
Subjt:  MGKSFTLIQTIATAGAFSAISFWYGFMFGRESARKDLGDLIQDLRRGTSKSDSSSSETPQS
A0A1S4E6G4 uncharacterized protein LOC1035034902.4e-2196.72Show/hide
Query:  MGKSFTLIQTIATAGAFSAISFWYGFMFGRESARKDLGDLIQDLRRGTSKSDSSSSETPQS
        MGKSFTLIQTIATAGAFSAISFWYGFMFGRESARKDLGDLIQDLRRG SKSD SSSETPQS
Subjt:  MGKSFTLIQTIATAGAFSAISFWYGFMFGRESARKDLGDLIQDLRRGTSKSDSSSSETPQS
A0A5A7TAA3 Putative membrane lipoprotein2.4e-2196.72Show/hide
Query:  MGKSFTLIQTIATAGAFSAISFWYGFMFGRESARKDLGDLIQDLRRGTSKSDSSSSETPQS
        MGKSFTLIQTIATAGAFSAISFWYGFMFGRESARKDLGDLIQDLRRG SKSD SSSETPQS
Subjt:  MGKSFTLIQTIATAGAFSAISFWYGFMFGRESARKDLGDLIQDLRRGTSKSDSSSSETPQS
A0A6J1DRK3 uncharacterized protein LOC1110231823.3e-1894.44Show/hide
Query:  MGKSFTLIQTIATAGAFSAISFWYGFMFGRESARKDLGDLIQDLRRGTSKSDSS
        M KSFTLIQTIATAGAFSAISFWYGFMFGRESARKDLGDLIQDLRRG+S SDSS
Subjt:  MGKSFTLIQTIATAGAFSAISFWYGFMFGRESARKDLGDLIQDLRRGTSKSDSS
A0A6J1I859 uncharacterized protein LOC1114718137.3e-1888.33Show/hide
Query:  MGKSFTLIQTIATAGAFSAISFWYGFMFGRESARKDLGDLIQDLRRGTSKSDSSSSETPQ
        M KSFTLIQTIATAGAFSAISFWYGFMFGRESARKDLGDLIQDLRRG+  S+ SSS TPQ
Subjt:  MGKSFTLIQTIATAGAFSAISFWYGFMFGRESARKDLGDLIQDLRRGTSKSDSSSSETPQ
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT4G17085.1 Putative membrane lipoprotein5.2e-1672.22Show/hide
Query:  MGKSFTLIQTIATAGAFSAISFWYGFMFGRESARKDLGDLIQDLRRGTSKSDSS
        M KSF+LIQT+A +G FSA+S WYGFMFGRESARK+LG LI++LRRG S SDS+
Subjt:  MGKSFTLIQTIATAGAFSAISFWYGFMFGRESARKDLGDLIQDLRRGTSKSDSS

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGGAAATCCTTCACTCTGATTCAGACAATTGCGACTGCCGGAGCCTTCTCTGCGATTTCATTCTGGTATGGTTTCATGTTTGGAAGAGAGTCCGCTCGTAAAGACTT
GGGAGATTTGATTCAAGATCTACGCCGAGGAACCTCCAAATCTGATTCTTCTTCTTCTGAAACTCCTCAGTCTTGA
mRNA sequenceShow/hide mRNA sequence
CAAAAGCCCAAAACGTATGGTCTCTGTCTGGGCCTAACAAGTAGAAGCCCAAGAAATGAAAGAACCTCCGTGTTTCTTCTTCTTCTCTGAATCGGCGGGGGAATTTGGTA
CGAGAGAGAATTGAAATGGGGAAATCCTTCACTCTGATTCAGACAATTGCGACTGCCGGAGCCTTCTCTGCGATTTCATTCTGGTATGGTTTCATGTTTGGAAGAGAGTC
CGCTCGTAAAGACTTGGGAGATTTGATTCAAGATCTACGCCGAGGAACCTCCAAATCTGATTCTTCTTCTTCTGAAACTCCTCAGTCTTGATTTGACACTTTATGTCCTT
TTCCTCAATACGCTTAGAAAGAGACCAAACCAAGACTAATGAAATGATTCACTTGAAACAAAATTGATGATCCTTGACGTGATGATATTGCTGCTCCAAGTCGTGTATAA
ATGTATATGTAACACACATATCATATTCCAACAAATAGCAAACATGTGACCCACGCAAGGCTAATTACATGCATATGTGTGCATAGATGATACATGTTTATGGGTGCAAC
CGATCATCTTCTAACTAGCAACAATGTGTGGTTTAAAAAATAAGCAACAATGTATACAAATTCTAAATAAAAAATGGAATCCTCAATTCAAATATAAATACATATTTAAA
ATTTA
Protein sequenceShow/hide protein sequence
MGKSFTLIQTIATAGAFSAISFWYGFMFGRESARKDLGDLIQDLRRGTSKSDSSSSETPQS