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PI0016227 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0016227
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrotrans_gag domain-containing protein
Genome locationchr12:15589329..15589742
RNA-Seq ExpressionPI0016227
SyntenyPI0016227
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0038045.1 uncharacterized protein E6C27_scaffold36G002470 [Cucumis melo var. makuwa]6.0e-3077.42Show/hide
Query:  MPPPLAQHVVINHNDNQYEGDGSDGLDDDQVTLLGEPRRVGHGVVRGRGRGRANQNIQRRAQQEAPQVDRNMGSIKFKIPKFIGKTDRKEYIQ
        MPPP A  +VINHNDNQ EGDGSDGLDDDQVTLL E RR GH VVR +GRGRA QNIQRRAQQEAPQ +RN+ +IKFKI KF GKTD +EYIQ
Subjt:  MPPPLAQHVVINHNDNQYEGDGSDGLDDDQVTLLGEPRRVGHGVVRGRGRGRANQNIQRRAQQEAPQVDRNMGSIKFKIPKFIGKTDRKEYIQ

KAA0043652.1 uncharacterized protein E6C27_scaffold320G001000 [Cucumis melo var. makuwa]4.3e-5281.02Show/hide
Query:  MDNQNDEVRLGEAQQGVIAWMISSMEALTDRLDRLEIENQARERMPPPLAQHVVINHNDNQYEGDGSDGLDDDQVTLLGEPRRVGHGVVRGRGRGRANQN
        M+NQNDEV+L EAQQGVIA MIS+MEALTDRL+R EIEN+ARERMPPPLA  ++INHNDNQ EGDGSD LDDDQVTLLGEPRRVGHGVVR RGRGRA QN
Subjt:  MDNQNDEVRLGEAQQGVIAWMISSMEALTDRLDRLEIENQARERMPPPLAQHVVINHNDNQYEGDGSDGLDDDQVTLLGEPRRVGHGVVRGRGRGRANQN

Query:  IQRRAQQEAPQVDRNMGSIKFKIPKFIGKTDRKEYIQ
        IQRRAQQEA Q + NM +IKFKIPKF  KTD KEYI+
Subjt:  IQRRAQQEAPQVDRNMGSIKFKIPKFIGKTDRKEYIQ

KAA0047036.1 uncharacterized protein E6C27_scaffold829G00200 [Cucumis melo var. makuwa]5.2e-4279.65Show/hide
Query:  MEALTDRLDRLEIENQARERMPPPLAQHVVINHNDNQYEGDGSDGLDDDQVTLLGEPRRVGHGVVRGRGRGRANQNIQRRAQQEAPQVDRNMGSIKFKIP
        MEALTDRL+RLEIEN+ARERMPPPLA  + INHN+NQYEGDG D LDDDQVTLL EPRRVGHGVVR RG G+A QNIQRR QQE PQ++RNM +IKFKIP
Subjt:  MEALTDRLDRLEIENQARERMPPPLAQHVVINHNDNQYEGDGSDGLDDDQVTLLGEPRRVGHGVVRGRGRGRANQNIQRRAQQEAPQVDRNMGSIKFKIP

Query:  KFIGKTDRKEYIQ
        KF GKTD +EYIQ
Subjt:  KFIGKTDRKEYIQ

TYK09709.1 uncharacterized protein E5676_scaffold447G001250 [Cucumis melo var. makuwa]2.8e-4381.2Show/hide
Query:  MISSMEALTDRLDRLEIENQARERMPPPLAQHVVINHNDNQYEGDGSDGLDDDQVTLLGEPRRVGHGVVRGRGRGRANQNIQRRAQQEAPQVDRNMGSIK
        MIS+MEALTDRL+R EIEN+ARERMPPPLA  ++INHNDNQ EGDGSD LDDDQVTLLGEPRRVGHGVVR RGRGRA QNIQRRAQQEA Q + NM +IK
Subjt:  MISSMEALTDRLDRLEIENQARERMPPPLAQHVVINHNDNQYEGDGSDGLDDDQVTLLGEPRRVGHGVVRGRGRGRANQNIQRRAQQEAPQVDRNMGSIK

Query:  FKIPKFIGKTDRKEYIQ
        FKIPKF  KTD KEYI+
Subjt:  FKIPKFIGKTDRKEYIQ

XP_022157414.1 LOW QUALITY PROTEIN: uncharacterized protein LOC111024115 [Momordica charantia]7.6e-2551.85Show/hide
Query:  EVRLGEAQQGVIAWMISSMEALTDRLDRLEIENQARERMPPPLAQHVVINHNDNQYEGDGSDGLDDDQVTLLGEPR----RVGHGVVRGRGRGRANQNIQ
        + R  EA +G +  MI SMEALT+R+ RLE +NQA  R+PPP    V+   ++++YEGDGSD  +DDQ T+L  PR     VG G+ RGRGRGR   N Q
Subjt:  EVRLGEAQQGVIAWMISSMEALTDRLDRLEIENQARERMPPPLAQHVVINHNDNQYEGDGSDGLDDDQVTLLGEPR----RVGHGVVRGRGRGRANQNIQ

Query:  RRAQQEAPQVDRNMGSIKFKIPKFIGKTDRKEYIQ
        R  +  A QVDRN+G+IK K+ KF GKTD + YIQ
Subjt:  RRAQQEAPQVDRNMGSIKFKIPKFIGKTDRKEYIQ

TrEMBL top hitse value%identityAlignment
A0A5A7T993 Retrotrans_gag domain-containing protein2.9e-3077.42Show/hide
Query:  MPPPLAQHVVINHNDNQYEGDGSDGLDDDQVTLLGEPRRVGHGVVRGRGRGRANQNIQRRAQQEAPQVDRNMGSIKFKIPKFIGKTDRKEYIQ
        MPPP A  +VINHNDNQ EGDGSDGLDDDQVTLL E RR GH VVR +GRGRA QNIQRRAQQEAPQ +RN+ +IKFKI KF GKTD +EYIQ
Subjt:  MPPPLAQHVVINHNDNQYEGDGSDGLDDDQVTLLGEPRRVGHGVVRGRGRGRANQNIQRRAQQEAPQVDRNMGSIKFKIPKFIGKTDRKEYIQ

A0A5A7TK52 Retrotrans_gag domain-containing protein2.1e-5281.02Show/hide
Query:  MDNQNDEVRLGEAQQGVIAWMISSMEALTDRLDRLEIENQARERMPPPLAQHVVINHNDNQYEGDGSDGLDDDQVTLLGEPRRVGHGVVRGRGRGRANQN
        M+NQNDEV+L EAQQGVIA MIS+MEALTDRL+R EIEN+ARERMPPPLA  ++INHNDNQ EGDGSD LDDDQVTLLGEPRRVGHGVVR RGRGRA QN
Subjt:  MDNQNDEVRLGEAQQGVIAWMISSMEALTDRLDRLEIENQARERMPPPLAQHVVINHNDNQYEGDGSDGLDDDQVTLLGEPRRVGHGVVRGRGRGRANQN

Query:  IQRRAQQEAPQVDRNMGSIKFKIPKFIGKTDRKEYIQ
        IQRRAQQEA Q + NM +IKFKIPKF  KTD KEYI+
Subjt:  IQRRAQQEAPQVDRNMGSIKFKIPKFIGKTDRKEYIQ

A0A5A7TYI0 Uncharacterized protein2.5e-4279.65Show/hide
Query:  MEALTDRLDRLEIENQARERMPPPLAQHVVINHNDNQYEGDGSDGLDDDQVTLLGEPRRVGHGVVRGRGRGRANQNIQRRAQQEAPQVDRNMGSIKFKIP
        MEALTDRL+RLEIEN+ARERMPPPLA  + INHN+NQYEGDG D LDDDQVTLL EPRRVGHGVVR RG G+A QNIQRR QQE PQ++RNM +IKFKIP
Subjt:  MEALTDRLDRLEIENQARERMPPPLAQHVVINHNDNQYEGDGSDGLDDDQVTLLGEPRRVGHGVVRGRGRGRANQNIQRRAQQEAPQVDRNMGSIKFKIP

Query:  KFIGKTDRKEYIQ
        KF GKTD +EYIQ
Subjt:  KFIGKTDRKEYIQ

A0A5D3CHG3 Retrotrans_gag domain-containing protein1.3e-4381.2Show/hide
Query:  MISSMEALTDRLDRLEIENQARERMPPPLAQHVVINHNDNQYEGDGSDGLDDDQVTLLGEPRRVGHGVVRGRGRGRANQNIQRRAQQEAPQVDRNMGSIK
        MIS+MEALTDRL+R EIEN+ARERMPPPLA  ++INHNDNQ EGDGSD LDDDQVTLLGEPRRVGHGVVR RGRGRA QNIQRRAQQEA Q + NM +IK
Subjt:  MISSMEALTDRLDRLEIENQARERMPPPLAQHVVINHNDNQYEGDGSDGLDDDQVTLLGEPRRVGHGVVRGRGRGRANQNIQRRAQQEAPQVDRNMGSIK

Query:  FKIPKFIGKTDRKEYIQ
        FKIPKF  KTD KEYI+
Subjt:  FKIPKFIGKTDRKEYIQ

A0A6J1DWE9 LOW QUALITY PROTEIN: uncharacterized protein LOC1110241153.7e-2551.85Show/hide
Query:  EVRLGEAQQGVIAWMISSMEALTDRLDRLEIENQARERMPPPLAQHVVINHNDNQYEGDGSDGLDDDQVTLLGEPR----RVGHGVVRGRGRGRANQNIQ
        + R  EA +G +  MI SMEALT+R+ RLE +NQA  R+PPP    V+   ++++YEGDGSD  +DDQ T+L  PR     VG G+ RGRGRGR   N Q
Subjt:  EVRLGEAQQGVIAWMISSMEALTDRLDRLEIENQARERMPPPLAQHVVINHNDNQYEGDGSDGLDDDQVTLLGEPR----RVGHGVVRGRGRGRANQNIQ

Query:  RRAQQEAPQVDRNMGSIKFKIPKFIGKTDRKEYIQ
        R  +  A QVDRN+G+IK K+ KF GKTD + YIQ
Subjt:  RRAQQEAPQVDRNMGSIKFKIPKFIGKTDRKEYIQ

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGACAATCAAAATGACGAAGTACGATTAGGAGAGGCACAACAAGGAGTTATTGCATGGATGATTAGTAGTATGGAAGCATTGACAGATCGTTTGGATAGGTTGGAGAT
TGAAAATCAGGCAAGAGAAAGAATGCCACCTCCTCTAGCACAGCATGTGGTAATTAACCATAATGACAACCAATATGAGGGTGATGGTTCTGATGGTTTAGACGATGACC
AAGTTACATTACTTGGGGAGCCAAGACGCGTGGGACATGGAGTAGTTAGAGGTAGAGGTCGTGGAAGAGCTAATCAAAACATCCAAAGGAGAGCTCAACAAGAAGCACCT
CAGGTTGATCGTAACATGGGATCCATCAAATTTAAAATTCCAAAGTTCATCGGGAAAACTGATCGGAAGGAGTACATTCAATGA
mRNA sequenceShow/hide mRNA sequence
ATGGACAATCAAAATGACGAAGTACGATTAGGAGAGGCACAACAAGGAGTTATTGCATGGATGATTAGTAGTATGGAAGCATTGACAGATCGTTTGGATAGGTTGGAGAT
TGAAAATCAGGCAAGAGAAAGAATGCCACCTCCTCTAGCACAGCATGTGGTAATTAACCATAATGACAACCAATATGAGGGTGATGGTTCTGATGGTTTAGACGATGACC
AAGTTACATTACTTGGGGAGCCAAGACGCGTGGGACATGGAGTAGTTAGAGGTAGAGGTCGTGGAAGAGCTAATCAAAACATCCAAAGGAGAGCTCAACAAGAAGCACCT
CAGGTTGATCGTAACATGGGATCCATCAAATTTAAAATTCCAAAGTTCATCGGGAAAACTGATCGGAAGGAGTACATTCAATGA
Protein sequenceShow/hide protein sequence
MDNQNDEVRLGEAQQGVIAWMISSMEALTDRLDRLEIENQARERMPPPLAQHVVINHNDNQYEGDGSDGLDDDQVTLLGEPRRVGHGVVRGRGRGRANQNIQRRAQQEAP
QVDRNMGSIKFKIPKFIGKTDRKEYIQ