; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

PI0016269 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0016269
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionPectin lyase-like superfamily protein
Genome locationchr02:11294259..11295222
RNA-Seq ExpressionPI0016269
SyntenyPI0016269
Gene Ontology termsGO:0005975 - carbohydrate metabolic process (biological process)
GO:0004650 - polygalacturonase activity (molecular function)
InterPro domainsIPR000743 - Glycoside hydrolase, family 28
IPR011050 - Pectin lyase fold/virulence factor
IPR012334 - Pectin lyase fold


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0068064.1 polygalacturonase [Cucumis melo var. makuwa]7.3e-4364.52Show/hide
Query:  SQGNLDGKGAALWACKNSSSSTTCPTGATS----------------------------------------------HTDGIHVQMSSNVVILNSKIGTGD
        S GNLDGKGA LWACKNSSS TTCPTGAT+                                              +TDGIHVQMSSNV +LNSKIGTGD
Subjt:  SQGNLDGKGAALWACKNSSSSTTCPTGATS----------------------------------------------HTDGIHVQMSSNVVILNSKIGTGD

Query:  DCISIGPGTSNLHIENIVCGPGHGISIGSLAKDLQEDGVQNVTVKNVVFSRTQTG
        DCISIGPGTSNLHIENIVCGPGHGISIGSLAKD+QEDGVQNVTVKNVVFSRTQ G
Subjt:  DCISIGPGTSNLHIENIVCGPGHGISIGSLAKDLQEDGVQNVTVKNVVFSRTQTG

TYK06443.1 polygalacturonase [Cucumis melo var. makuwa]7.3e-4364.52Show/hide
Query:  SQGNLDGKGAALWACKNSSSSTTCPTGATS----------------------------------------------HTDGIHVQMSSNVVILNSKIGTGD
        S GNLDGKGA LWACKNSSS TTCPTGAT+                                              +TDGIHVQMSSNV +LNSKIGTGD
Subjt:  SQGNLDGKGAALWACKNSSSSTTCPTGATS----------------------------------------------HTDGIHVQMSSNVVILNSKIGTGD

Query:  DCISIGPGTSNLHIENIVCGPGHGISIGSLAKDLQEDGVQNVTVKNVVFSRTQTG
        DCISIGPGTSNLHIENIVCGPGHGISIGSLAKD+QEDGVQNVTVKNVVFSRTQ G
Subjt:  DCISIGPGTSNLHIENIVCGPGHGISIGSLAKDLQEDGVQNVTVKNVVFSRTQTG

TYK26944.1 polygalacturonase [Cucumis melo var. makuwa]6.2e-4263.87Show/hide
Query:  SQGNLDGKGAALWACKNSSSSTTCPTGATS----------------------------------------------HTDGIHVQMSSNVVILNSKIGTGD
        S GNLDGKGA LWACKNSSSSTTCP+GAT+                                              +TDGIHVQMSSNV +LNSKIGTGD
Subjt:  SQGNLDGKGAALWACKNSSSSTTCPTGATS----------------------------------------------HTDGIHVQMSSNVVILNSKIGTGD

Query:  DCISIGPGTSNLHIENIVCGPGHGISIGSLAKDLQEDGVQNVTVKNVVFSRTQTG
        DCISIGPGTSNL IENIVCGPGHGISIGSLAKDLQE+GVQNVTVKNVVFSRTQ G
Subjt:  DCISIGPGTSNLHIENIVCGPGHGISIGSLAKDLQEDGVQNVTVKNVVFSRTQTG

XP_011652824.2 polygalacturonase [Cucumis sativus]3.1e-4162.58Show/hide
Query:  SQGNLDGKGAALWACKNSSSSTTCPTGATS----------------------------------------------HTDGIHVQMSSNVVILNSKIGTGD
        S GNLDGKGA LW CKNSS STTCP+GAT+                                              +TDGIHVQMS++V ILNSKIGTGD
Subjt:  SQGNLDGKGAALWACKNSSSSTTCPTGATS----------------------------------------------HTDGIHVQMSSNVVILNSKIGTGD

Query:  DCISIGPGTSNLHIENIVCGPGHGISIGSLAKDLQEDGVQNVTVKNVVFSRTQTG
        DCISIGPGTSNLHIENI+CGPGHGISIGSLAKDLQEDGVQNVTVKNVVFSRTQ G
Subjt:  DCISIGPGTSNLHIENIVCGPGHGISIGSLAKDLQEDGVQNVTVKNVVFSRTQTG

XP_016899793.1 PREDICTED: polygalacturonase-like [Cucumis melo]4.0e-4154Show/hide
Query:  MLLALEAKVMGEPTQHKHFKQFGLMLVPPQNQPQFMSHEEDITFALELSMDLAKIMRSLSALMVLWWLPPTSKLLETLQLGLYLGTLMELPSQGNLDGKG
        MLLALE KVM E T+HKHFK FGLMLVPPQNQPQFMSHEEDITFALELSMDLAKIM+SLSALM LWWLPPT K                           
Subjt:  MLLALEAKVMGEPTQHKHFKQFGLMLVPPQNQPQFMSHEEDITFALELSMDLAKIMRSLSALMVLWWLPPTSKLLETLQLGLYLGTLMELPSQGNLDGKG

Query:  AALWACKNSSSSTTCPTGATSHTDGIHVQMSSNVVILNSKIGTGDDCISIGPGTSNLHIENIVCGPGHGISIGSLAKDLQEDGVQNVTVKNVVFSRTQTG
                                                              SNL IENIVCGPGHGISIGSLAKDLQE+GVQNVTVKNVVFSRTQ G
Subjt:  AALWACKNSSSSTTCPTGATSHTDGIHVQMSSNVVILNSKIGTGDDCISIGPGTSNLHIENIVCGPGHGISIGSLAKDLQEDGVQNVTVKNVVFSRTQTG

TrEMBL top hitse value%identityAlignment
A0A5A7TUJ2 Polygalacturonase1.9e-4163.23Show/hide
Query:  SQGNLDGKGAALWACKNSSSSTTCPTGATS----------------------------------------------HTDGIHVQMSSNVVILNSKIGTGD
        S GNLDGKGA LWACKNSSSSTTCP+GAT+                                              +TDGIH QMSSNV +LNSKIGTGD
Subjt:  SQGNLDGKGAALWACKNSSSSTTCPTGATS----------------------------------------------HTDGIHVQMSSNVVILNSKIGTGD

Query:  DCISIGPGTSNLHIENIVCGPGHGISIGSLAKDLQEDGVQNVTVKNVVFSRTQTG
        DCISIGPGTSNL IENIVCGPGHGISIGSLAKDLQE+GVQNVTVKNVVFSRTQ G
Subjt:  DCISIGPGTSNLHIENIVCGPGHGISIGSLAKDLQEDGVQNVTVKNVVFSRTQTG

A0A5A7VKX0 Polygalacturonase3.5e-4364.52Show/hide
Query:  SQGNLDGKGAALWACKNSSSSTTCPTGATS----------------------------------------------HTDGIHVQMSSNVVILNSKIGTGD
        S GNLDGKGA LWACKNSSS TTCPTGAT+                                              +TDGIHVQMSSNV +LNSKIGTGD
Subjt:  SQGNLDGKGAALWACKNSSSSTTCPTGATS----------------------------------------------HTDGIHVQMSSNVVILNSKIGTGD

Query:  DCISIGPGTSNLHIENIVCGPGHGISIGSLAKDLQEDGVQNVTVKNVVFSRTQTG
        DCISIGPGTSNLHIENIVCGPGHGISIGSLAKD+QEDGVQNVTVKNVVFSRTQ G
Subjt:  DCISIGPGTSNLHIENIVCGPGHGISIGSLAKDLQEDGVQNVTVKNVVFSRTQTG

A0A5D3C3E8 Polygalacturonase3.5e-4364.52Show/hide
Query:  SQGNLDGKGAALWACKNSSSSTTCPTGATS----------------------------------------------HTDGIHVQMSSNVVILNSKIGTGD
        S GNLDGKGA LWACKNSSS TTCPTGAT+                                              +TDGIHVQMSSNV +LNSKIGTGD
Subjt:  SQGNLDGKGAALWACKNSSSSTTCPTGATS----------------------------------------------HTDGIHVQMSSNVVILNSKIGTGD

Query:  DCISIGPGTSNLHIENIVCGPGHGISIGSLAKDLQEDGVQNVTVKNVVFSRTQTG
        DCISIGPGTSNLHIENIVCGPGHGISIGSLAKD+QEDGVQNVTVKNVVFSRTQ G
Subjt:  DCISIGPGTSNLHIENIVCGPGHGISIGSLAKDLQEDGVQNVTVKNVVFSRTQTG

A0A5D3DTW1 Polygalacturonase3.0e-4263.87Show/hide
Query:  SQGNLDGKGAALWACKNSSSSTTCPTGATS----------------------------------------------HTDGIHVQMSSNVVILNSKIGTGD
        S GNLDGKGA LWACKNSSSSTTCP+GAT+                                              +TDGIHVQMSSNV +LNSKIGTGD
Subjt:  SQGNLDGKGAALWACKNSSSSTTCPTGATS----------------------------------------------HTDGIHVQMSSNVVILNSKIGTGD

Query:  DCISIGPGTSNLHIENIVCGPGHGISIGSLAKDLQEDGVQNVTVKNVVFSRTQTG
        DCISIGPGTSNL IENIVCGPGHGISIGSLAKDLQE+GVQNVTVKNVVFSRTQ G
Subjt:  DCISIGPGTSNLHIENIVCGPGHGISIGSLAKDLQEDGVQNVTVKNVVFSRTQTG

E5GBC3 Polygalacturonase1.9e-4163.23Show/hide
Query:  SQGNLDGKGAALWACKNSSSSTTCPTGATS----------------------------------------------HTDGIHVQMSSNVVILNSKIGTGD
        S GNLDGKGA LWACKNSSSSTTCP+GAT+                                              +TDGIH QMSSNV +LNSKIGTGD
Subjt:  SQGNLDGKGAALWACKNSSSSTTCPTGATS----------------------------------------------HTDGIHVQMSSNVVILNSKIGTGD

Query:  DCISIGPGTSNLHIENIVCGPGHGISIGSLAKDLQEDGVQNVTVKNVVFSRTQTG
        DCISIGPGTSNL IENIVCGPGHGISIGSLAKDLQE+GVQNVTVKNVVFSRTQ G
Subjt:  DCISIGPGTSNLHIENIVCGPGHGISIGSLAKDLQEDGVQNVTVKNVVFSRTQTG

SwissProt top hitse value%identityAlignment
O22818 Probable polygalacturonase At2g438601.4e-2343.14Show/hide
Query:  GNLDGKGAALWACKNSSSSTTCPTGATS----------------------------------------------HTDGIHVQMSSNVVILNSKIGTGDDC
        G LD +G +LW CKN+     CPTGA S                                              +TDGIHV+ S +V I NS+IGTGDDC
Subjt:  GNLDGKGAALWACKNSSSSTTCPTGATS----------------------------------------------HTDGIHVQMSSNVVILNSKIGTGDDC

Query:  ISIGPGTSNLHIENIVCGPGHGISIGSLAKDLQEDGVQNVTVKNVVFSRTQTG
        ISIGPG++N+ I+ I CGPGHGISIGSL +  +E GV NVTV NV F  T  G
Subjt:  ISIGPGTSNLHIENIVCGPGHGISIGSLAKDLQEDGVQNVTVKNVVFSRTQTG

P35338 Exopolygalacturonase2.9e-1847Show/hide
Query:  LWACKNS--SSSTTCPTGATSHTDGIHVQMSSNVVILNSKIGTGDDCISIGPGTSNLHIENIVCGPGHGISIGSLAKDLQEDGVQNVTVKNVVFSRTQTG
        ++ CKN      T    G + +TDGIH+  SS + I N+ IG GDDCISIGPGTS ++I  + CGPGHGISIGSL +   E  V ++ VK+    +T  G
Subjt:  LWACKNS--SSSTTCPTGATSHTDGIHVQMSSNVVILNSKIGTGDDCISIGPGTSNLHIENIVCGPGHGISIGSLAKDLQEDGVQNVTVKNVVFSRTQTG

P48979 Polygalacturonase8.7e-3150.32Show/hide
Query:  SQGNLDGKGAALWACKNSSSSTTCPTGATS----------------------------------------------HTDGIHVQMSSNVVILNSKIGTGD
        S G LDG+G ALWACK +    +CP+GAT+                                              +TDGIHVQMSS V ILNSKI TGD
Subjt:  SQGNLDGKGAALWACKNSSSSTTCPTGATS----------------------------------------------HTDGIHVQMSSNVVILNSKIGTGD

Query:  DCISIGPGTSNLHIENIVCGPGHGISIGSLAKDLQEDGVQNVTVKNVVFSRTQTG
        DC+SIGPGTSNL IE + CGPGHGISIGSL K+ +E GVQNVTVK V FS TQ G
Subjt:  DCISIGPGTSNLHIENIVCGPGHGISIGSLAKDLQEDGVQNVTVKNVVFSRTQTG

Q40312 Polygalacturonase7.7e-1945Show/hide
Query:  LWACKNSS--SSTTCPTGATSHTDGIHVQMSSNVVILNSKIGTGDDCISIGPGTSNLHIENIVCGPGHGISIGSLAKDLQEDGVQNVTVKNVVFSRTQTG
        ++ CKN +    T    G + +TDGIH+  S++V ILN+ IGTGDDC+SIG G+  + ++ + CGPGHG+S+GSL K   E+ V+ +TVKN   + T  G
Subjt:  LWACKNSS--SSTTCPTGATSHTDGIHVQMSSNVVILNSKIGTGDDCISIGPGTSNLHIENIVCGPGHGISIGSLAKDLQEDGVQNVTVKNVVFSRTQTG

Q6H9K0 Exopolygalacturonase (Fragment)2.0e-1954.55Show/hide
Query:  TTCPTGATSHTDGIHVQMSSNVVILNSKIGTGDDCISIGPGTSNLHIENIVCGPGHGISIGSLAKDLQEDGVQNVTVKNVVFSRTQTG
        T    G + +TDGIHV +S  V I N+KI TGDDCISIGPG+ N+ I  + CGPGHGISIGSL +   E  V+ +TVK   FS T  G
Subjt:  TTCPTGATSHTDGIHVQMSSNVVILNSKIGTGDDCISIGPGTSNLHIENIVCGPGHGISIGSLAKDLQEDGVQNVTVKNVVFSRTQTG

Arabidopsis top hitse value%identityAlignment
AT1G05660.1 Pectin lyase-like superfamily protein1.8e-2359.04Show/hide
Query:  GATSHTDGIHVQMSSNVVILNSKIGTGDDCISIGPGTSNLHIENIVCGPGHGISIGSLAKDLQEDGVQNVTVKNVVFSRTQTG
        G + +TDG HVQ S+ V    S + TGDDC++IGPGT NL I  + CGPGHG+SIGSLAK+L+EDGV+NVTV + VF+ +Q G
Subjt:  GATSHTDGIHVQMSSNVVILNSKIGTGDDCISIGPGTSNLHIENIVCGPGHGISIGSLAKDLQEDGVQNVTVKNVVFSRTQTG

AT1G65570.1 Pectin lyase-like superfamily protein9.3e-2842.48Show/hide
Query:  GNLDGKGAALWACKNSSSSTTCPTGATS----------------------------------------------HTDGIHVQMSSNVVILNSKIGTGDDC
        G+ D KG+ LW+CK  ++   CP GAT+                                              +TDGIH+Q+S+++ + N+ I TGDDC
Subjt:  GNLDGKGAALWACKNSSSSTTCPTGATS----------------------------------------------HTDGIHVQMSSNVVILNSKIGTGDDC

Query:  ISIGPGTSNLHIENIVCGPGHGISIGSLAKDLQEDGVQNVTVKNVVFSRTQTG
        ISIGPGT NL ++ I CGPGHGISIGSLAK ++E GV+NVTVKN VF RT  G
Subjt:  ISIGPGTSNLHIENIVCGPGHGISIGSLAKDLQEDGVQNVTVKNVVFSRTQTG

AT2G43860.1 Pectin lyase-like superfamily protein9.6e-2543.14Show/hide
Query:  GNLDGKGAALWACKNSSSSTTCPTGATS----------------------------------------------HTDGIHVQMSSNVVILNSKIGTGDDC
        G LD +G +LW CKN+     CPTGA S                                              +TDGIHV+ S +V I NS+IGTGDDC
Subjt:  GNLDGKGAALWACKNSSSSTTCPTGATS----------------------------------------------HTDGIHVQMSSNVVILNSKIGTGDDC

Query:  ISIGPGTSNLHIENIVCGPGHGISIGSLAKDLQEDGVQNVTVKNVVFSRTQTG
        ISIGPG++N+ I+ I CGPGHGISIGSL +  +E GV NVTV NV F  T  G
Subjt:  ISIGPGTSNLHIENIVCGPGHGISIGSLAKDLQEDGVQNVTVKNVVFSRTQTG

AT2G43870.1 Pectin lyase-like superfamily protein1.4e-2846.41Show/hide
Query:  GNLDGKGAALWACKNSSSSTTCPTGATS----------------------------------------------HTDGIHVQMSSNVVILNSKIGTGDDC
        G LD +GA+LW CK S  +  CP+GAT+                                              +TDGIHVQ SS+V I N+KI TGDDC
Subjt:  GNLDGKGAALWACKNSSSSTTCPTGATS----------------------------------------------HTDGIHVQMSSNVVILNSKIGTGDDC

Query:  ISIGPGTSNLHIENIVCGPGHGISIGSLAKDLQEDGVQNVTVKNVVFSRTQTG
        +SIGPGT+ L IEN+ CGPGHGISIGSL KD  E GVQNVTVK V F+ T  G
Subjt:  ISIGPGTSNLHIENIVCGPGHGISIGSLAKDLQEDGVQNVTVKNVVFSRTQTG

AT3G59850.1 Pectin lyase-like superfamily protein1.1e-2846.41Show/hide
Query:  GNLDGKGAALWACKNSSSSTTCPTGATS----------------------------------------------HTDGIHVQMSSNVVILNSKIGTGDDC
        G LD +GA+LW+CK S  +  CP+GATS                                              +TDGIHVQ SS V ILNSKI TGDDC
Subjt:  GNLDGKGAALWACKNSSSSTTCPTGATS----------------------------------------------HTDGIHVQMSSNVVILNSKIGTGDDC

Query:  ISIGPGTSNLHIENIVCGPGHGISIGSLAKDLQEDGVQNVTVKNVVFSRTQTG
        +SIGPGT+ L IEN+ CGPGHGISIGSL K+  E GVQN+TVK   F+ T+ G
Subjt:  ISIGPGTSNLHIENIVCGPGHGISIGSLAKDLQEDGVQNVTVKNVVFSRTQTG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCGTGGTCTTACAATGTTGTTAGCTTTGGAGGCAAAGGTGATGGGAGAACCGACTCAACACAAGCATTTCAAGCAGTTTGGTCTAATGCTTGTGCCTCCACAAAACCA
ACCACAATTTATGTCCCACGAGGAAGATATTACCTTCGCTCTGGAACTTTCAATGGACCTTGCAAAAATAATGCGATCTTTATCCGCATTGATGGTACTTTGGTGGCTCC
CTCCGACTTCCAAGTTGTTGGAAACTCTGCAGCTTGGATTGTATTTAGGCACGTTGATGGAGTTACCGTCTCAGGGCAATCTTGATGGTAAGGGAGCTGCTTTATGGGCT
TGCAAGAATTCTTCTAGTAGCACTACTTGCCCAACTGGTGCCACGTCCCACACAGATGGAATTCACGTGCAAATGTCCTCTAATGTGGTCATACTAAACTCCAAAATAGG
CACTGGAGATGATTGCATTTCCATCGGTCCTGGCACTTCCAACTTACATATTGAAAATATCGTATGTGGACCCGGTCATGGAATAAGCATTGGGAGTCTAGCAAAGGATC
TACAAGAGGATGGAGTCCAAAATGTTACGGTGAAGAATGTTGTATTTTCACGCACTCAAACGGGTAAGAATCAAAGCATGGGGCAAGCCTAG
mRNA sequenceShow/hide mRNA sequence
ATGCGTGGTCTTACAATGTTGTTAGCTTTGGAGGCAAAGGTGATGGGAGAACCGACTCAACACAAGCATTTCAAGCAGTTTGGTCTAATGCTTGTGCCTCCACAAAACCA
ACCACAATTTATGTCCCACGAGGAAGATATTACCTTCGCTCTGGAACTTTCAATGGACCTTGCAAAAATAATGCGATCTTTATCCGCATTGATGGTACTTTGGTGGCTCC
CTCCGACTTCCAAGTTGTTGGAAACTCTGCAGCTTGGATTGTATTTAGGCACGTTGATGGAGTTACCGTCTCAGGGCAATCTTGATGGTAAGGGAGCTGCTTTATGGGCT
TGCAAGAATTCTTCTAGTAGCACTACTTGCCCAACTGGTGCCACGTCCCACACAGATGGAATTCACGTGCAAATGTCCTCTAATGTGGTCATACTAAACTCCAAAATAGG
CACTGGAGATGATTGCATTTCCATCGGTCCTGGCACTTCCAACTTACATATTGAAAATATCGTATGTGGACCCGGTCATGGAATAAGCATTGGGAGTCTAGCAAAGGATC
TACAAGAGGATGGAGTCCAAAATGTTACGGTGAAGAATGTTGTATTTTCACGCACTCAAACGGGTAAGAATCAAAGCATGGGGCAAGCCTAG
Protein sequenceShow/hide protein sequence
MRGLTMLLALEAKVMGEPTQHKHFKQFGLMLVPPQNQPQFMSHEEDITFALELSMDLAKIMRSLSALMVLWWLPPTSKLLETLQLGLYLGTLMELPSQGNLDGKGAALWA
CKNSSSSTTCPTGATSHTDGIHVQMSSNVVILNSKIGTGDDCISIGPGTSNLHIENIVCGPGHGISIGSLAKDLQEDGVQNVTVKNVVFSRTQTGKNQSMGQA