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PI0016276 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0016276
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrotransposon protein
Genome locationchr08:15470077..15472139
RNA-Seq ExpressionPI0016276
SyntenyPI0016276
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0033168.1 putative nuclease HARBI1 [Cucumis melo var. makuwa]4.9e-3744.76Show/hide
Query:  MVAMLLYILAHDVKNRMIQREFVRSGETISRHFNIVLLAILRLHDELLKKPHPVPNSCIDLRWKWYE-----------------------LQRMMVEKLL
        M+AM L+ILAHD+KNR+IQR F+RSGETI RHFN+VLLAI+RLHDELLKKP PVPN+C D RW+W+E                          + + K  
Subjt:  MVAMLLYILAHDVKNRMIQREFVRSGETISRHFNIVLLAILRLHDELLKKPHPVPNSCIDLRWKWYE-----------------------LQRMMVEKLL

Query:  GCDIQGSSTIECRI--------KSLKRTFQ----------VIVEIHPTAKGLLNKLFPYYNDLSYVFGKDRATGARAETFANIRSNVPANFNGFPFDDAN
            + +  +EC +        +S   TF+          +  + H   KGLLN+ FP+Y+ LSYVFGKDRATG RAETF ++RSN P  +  F  D  +
Subjt:  GCDIQGSSTIECRI--------KSLKRTFQ----------VIVEIHPTAKGLLNKLFPYYNDLSYVFGKDRATGARAETFANIRSNVPANFNGFPFDDAN

Query:  DPEILMMDSQ
        D E   M SQ
Subjt:  DPEILMMDSQ

KAA0041291.1 retrotransposon protein [Cucumis melo var. makuwa]1.5e-4136.65Show/hide
Query:  MVAMLLYILAHDVKNRMIQREFVRSGETISRHFNIVLLAILRLHDELLKKPHPVPNSCIDLRWKWYEL--------------------------------
        MVAM L+I+AHDVKNR+IQREF+RSGETISRHFN+VLL ++RLHD+LLKKP PV N C D RW+W+E+                                
Subjt:  MVAMLLYILAHDVKNRMIQREFVRSGETISRHFNIVLLAILRLHDELLKKPHPVPNSCIDLRWKWYEL--------------------------------

Query:  -------------------------QRMMVEKLLGCDIQGSST---------------------IECRIKSL----------------------------
                                 QR  +++  G +   S++                     +EC ++ +                            
Subjt:  -------------------------QRMMVEKLLGCDIQGSST---------------------IECRIKSL----------------------------

Query:  --KRTFQVIVEIHPTAKGLLNKLFPYYNDLSYVFGKDRATGARAETFANIRSNVPANFNGFPFDDANDPEILMMDSQGLDMSLDELMDTQPGRSSDERNA
          K  F   V+ HP AKGLLNK F +Y++LSYVFGKDRAT  RAE+FAN  SN  A ++ F  D A D +   M SQGL+MS D+LM T+  R S+ RN 
Subjt:  --KRTFQVIVEIHPTAKGLLNKLFPYYNDLSYVFGKDRATGARAETFANIRSNVPANFNGFPFDDANDPEILMMDSQGLDMSLDELMDTQPGRSSDERNA

Query:  SSGSKRKRGGQMVETIEVICNA
        SSGSK+KR G   ++ +++  A
Subjt:  SSGSKRKRGGQMVETIEVICNA

KAA0067183.1 putative nuclease HARBI1 [Cucumis melo var. makuwa]3.0e-4249.77Show/hide
Query:  MVAMLLYILAHDVKNRMIQREFVRSGETISRHFNIVLLAILRLHDELLKKPHPVPNSCIDLRWKWYE-------------------------LQRMMVEK
        MVAM ++ILAHD+KNRMIQR+FVR GET+SRHFN VLLA+LRLHDELLKK  PV NSC D RWKW+E                          +  +V  
Subjt:  MVAMLLYILAHDVKNRMIQREFVRSGETISRHFNIVLLAILRLHDELLKKPHPVPNSCIDLRWKWYE-------------------------LQRMMVEK

Query:  LLG-CDIQG----------SSTIECRIKSLKRTFQVIVEIHPTAKGLLNKLFPYYNDLSYVFGKDRATGARAETFANIRSNVPANFN-GFPFDDANDPEI
        +LG CD +G           S  + RI     +    ++ HP AKGLLNK FPYY+DLSYVFGKDR T  R++TF N+ SNVP  FN      D+ D +I
Subjt:  LLG-CDIQG----------SSTIECRIKSLKRTFQVIVEIHPTAKGLLNKLFPYYNDLSYVFGKDRATGARAETFANIRSNVPANFN-GFPFDDANDPEI

Query:  LMMDSQGLDMSLDEL
         MM SQG+ MS DE+
Subjt:  LMMDSQGLDMSLDEL

TYK02751.1 putative nuclease HARBI1 [Cucumis melo var. makuwa]4.9e-3732.96Show/hide
Query:  MVAMLLYILAHDVKNRMIQREFVRSGETISRHFNIVLLAILRLHDELLKKPHPVPNSCIDLRWKWYE-------------------------LQRMMVEK
        MVAM L+I+AHDVKNR+IQREF+RSGETISRHFN+VLL ++RLHD+LLKKP PV N C D RW+W+E                          +  +   
Subjt:  MVAMLLYILAHDVKNRMIQREFVRSGETISRHFNIVLLAILRLHDELLKKPHPVPNSCIDLRWKWYE-------------------------LQRMMVEK

Query:  LLG-CDIQG-------------------------------------------------------------------------------------------
        +LG CD +G                                                                                           
Subjt:  LLG-CDIQG-------------------------------------------------------------------------------------------

Query:  SSTIECRIKSL------------------------------KRTFQVIVEIHPTAKGLLNKLFPYYNDLSYVFGKDRATGARAETFANIRSNVPANFNGF
        +  +EC ++ +                              K  F   V+ HP AKGLLNK F +Y++LSYVFGKDRAT  RAE+FAN  SN  A ++ F
Subjt:  SSTIECRIKSL------------------------------KRTFQVIVEIHPTAKGLLNKLFPYYNDLSYVFGKDRATGARAETFANIRSNVPANFNGF

Query:  PFDDANDPEILMMDSQGLDMSLDELMDTQPGRSSDERNASSGSKRKRGGQMVETIEVICNA
          D A D +   M SQGL+MS D+LM T+  R S+ RN SSGSK+KR G   ++ +++  A
Subjt:  PFDDANDPEILMMDSQGLDMSLDELMDTQPGRSSDERNASSGSKRKRGGQMVETIEVICNA

TYK26031.1 putative nuclease HARBI1 [Cucumis melo var. makuwa]2.7e-4355.32Show/hide
Query:  MVAMLLYILAHDVKNRMIQREFVRSGETISRHFNIVLLAILRLHDELLKKPHPVPNSCIDLRWKWYE---------LQRMMVEKLLGCDIQGSSTIECRI
        MVAM ++ILAHD+KNRMIQR+FVR GET+SRHFN VLLA+LRLHDELLKK  PV NSC D RWKW+E           ++ V        +GS+T + RI
Subjt:  MVAMLLYILAHDVKNRMIQREFVRSGETISRHFNIVLLAILRLHDELLKKPHPVPNSCIDLRWKWYE---------LQRMMVEKLLGCDIQGSSTIECRI

Query:  KSLKRTFQVIVEIHPTAKGLLNKLFPYYNDLSYVFGKDRATGARAETFANIRSNVPANFN-GFPFDDANDPEILMMDSQGLDMSLDEL
             +    ++ HP AKGLLNK FPYY+DLSYVFGKDR T  R++TF N+ SNVP  FN      D+ D +I MM SQG+ MS DE+
Subjt:  KSLKRTFQVIVEIHPTAKGLLNKLFPYYNDLSYVFGKDRATGARAETFANIRSNVPANFN-GFPFDDANDPEILMMDSQGLDMSLDEL

TrEMBL top hitse value%identityAlignment
A0A5A7TI01 Retrotransposon protein7.1e-4236.65Show/hide
Query:  MVAMLLYILAHDVKNRMIQREFVRSGETISRHFNIVLLAILRLHDELLKKPHPVPNSCIDLRWKWYEL--------------------------------
        MVAM L+I+AHDVKNR+IQREF+RSGETISRHFN+VLL ++RLHD+LLKKP PV N C D RW+W+E+                                
Subjt:  MVAMLLYILAHDVKNRMIQREFVRSGETISRHFNIVLLAILRLHDELLKKPHPVPNSCIDLRWKWYEL--------------------------------

Query:  -------------------------QRMMVEKLLGCDIQGSST---------------------IECRIKSL----------------------------
                                 QR  +++  G +   S++                     +EC ++ +                            
Subjt:  -------------------------QRMMVEKLLGCDIQGSST---------------------IECRIKSL----------------------------

Query:  --KRTFQVIVEIHPTAKGLLNKLFPYYNDLSYVFGKDRATGARAETFANIRSNVPANFNGFPFDDANDPEILMMDSQGLDMSLDELMDTQPGRSSDERNA
          K  F   V+ HP AKGLLNK F +Y++LSYVFGKDRAT  RAE+FAN  SN  A ++ F  D A D +   M SQGL+MS D+LM T+  R S+ RN 
Subjt:  --KRTFQVIVEIHPTAKGLLNKLFPYYNDLSYVFGKDRATGARAETFANIRSNVPANFNGFPFDDANDPEILMMDSQGLDMSLDELMDTQPGRSSDERNA

Query:  SSGSKRKRGGQMVETIEVICNA
        SSGSK+KR G   ++ +++  A
Subjt:  SSGSKRKRGGQMVETIEVICNA

A0A5A7UAW6 Putative nuclease HARBI12.4e-3741.81Show/hide
Query:  MVAMLLYILAHDVKNRMIQREFVRSGETISRHFNIVLLAILRLHDELLKKPHPVPNSCIDLRWKWYE--------------------------LQRMMVE
        MVAM L+ILAHD+KNRMIQR+FV+SGET+SRHFN+VLLA+LRLHDELLKKP PV NSC D RWKW+E                             +   
Subjt:  MVAMLLYILAHDVKNRMIQREFVRSGETISRHFNIVLLAILRLHDELLKKPHPVPNSCIDLRWKWYE--------------------------LQRMMVE

Query:  KLLGCDIQG----------SSTIECRI--------KSLK----------------RTFQVIVEIHPTAKGLLNK----LFPYYN-----DLSYVFGK---
         L  CD +G           S  + RI        K LK                  +QV  E H    GL  K    L  ++N     D   + G    
Subjt:  KLLGCDIQG----------SSTIECRI--------KSLK----------------RTFQVIVEIHPTAKGLLNK----LFPYYN-----DLSYVFGK---

Query:  DRATGARAETFANIRSNVPANFN-GFPFDDANDPEILMMDSQGLDMSLDELMDTQPGRSSDERNASSGSKRKRGGQMVETIEVICNA
        DRA  AR ETFAN+ SNV   FN   P DD++D +I  M SQG+ MS DE+   +  ++S+ RN SSGSKRKR  +  ET+EVI +A
Subjt:  DRATGARAETFANIRSNVPANFN-GFPFDDANDPEILMMDSQGLDMSLDELMDTQPGRSSDERNASSGSKRKRGGQMVETIEVICNA

A0A5A7VGH2 Putative nuclease HARBI11.4e-4249.77Show/hide
Query:  MVAMLLYILAHDVKNRMIQREFVRSGETISRHFNIVLLAILRLHDELLKKPHPVPNSCIDLRWKWYE-------------------------LQRMMVEK
        MVAM ++ILAHD+KNRMIQR+FVR GET+SRHFN VLLA+LRLHDELLKK  PV NSC D RWKW+E                          +  +V  
Subjt:  MVAMLLYILAHDVKNRMIQREFVRSGETISRHFNIVLLAILRLHDELLKKPHPVPNSCIDLRWKWYE-------------------------LQRMMVEK

Query:  LLG-CDIQG----------SSTIECRIKSLKRTFQVIVEIHPTAKGLLNKLFPYYNDLSYVFGKDRATGARAETFANIRSNVPANFN-GFPFDDANDPEI
        +LG CD +G           S  + RI     +    ++ HP AKGLLNK FPYY+DLSYVFGKDR T  R++TF N+ SNVP  FN      D+ D +I
Subjt:  LLG-CDIQG----------SSTIECRIKSLKRTFQVIVEIHPTAKGLLNKLFPYYNDLSYVFGKDRATGARAETFANIRSNVPANFN-GFPFDDANDPEI

Query:  LMMDSQGLDMSLDEL
         MM SQG+ MS DE+
Subjt:  LMMDSQGLDMSLDEL

A0A5D3CTT8 Putative nuclease HARBI12.4e-3744.76Show/hide
Query:  MVAMLLYILAHDVKNRMIQREFVRSGETISRHFNIVLLAILRLHDELLKKPHPVPNSCIDLRWKWYE-----------------------LQRMMVEKLL
        M+AM L+ILAHD+KNR+IQR F+RSGETI RHFN+VLLAI+RLHDELLKKP PVPN+C D RW+W+E                          + + K  
Subjt:  MVAMLLYILAHDVKNRMIQREFVRSGETISRHFNIVLLAILRLHDELLKKPHPVPNSCIDLRWKWYE-----------------------LQRMMVEKLL

Query:  GCDIQGSSTIECRI--------KSLKRTFQ----------VIVEIHPTAKGLLNKLFPYYNDLSYVFGKDRATGARAETFANIRSNVPANFNGFPFDDAN
            + +  +EC +        +S   TF+          +  + H   KGLLN+ FP+Y+ LSYVFGKDRATG RAETF ++RSN P  +  F  D  +
Subjt:  GCDIQGSSTIECRI--------KSLKRTFQ----------VIVEIHPTAKGLLNKLFPYYNDLSYVFGKDRATGARAETFANIRSNVPANFNGFPFDDAN

Query:  DPEILMMDSQ
        D E   M SQ
Subjt:  DPEILMMDSQ

A0A5D3DQT0 Putative nuclease HARBI11.3e-4355.32Show/hide
Query:  MVAMLLYILAHDVKNRMIQREFVRSGETISRHFNIVLLAILRLHDELLKKPHPVPNSCIDLRWKWYE---------LQRMMVEKLLGCDIQGSSTIECRI
        MVAM ++ILAHD+KNRMIQR+FVR GET+SRHFN VLLA+LRLHDELLKK  PV NSC D RWKW+E           ++ V        +GS+T + RI
Subjt:  MVAMLLYILAHDVKNRMIQREFVRSGETISRHFNIVLLAILRLHDELLKKPHPVPNSCIDLRWKWYE---------LQRMMVEKLLGCDIQGSSTIECRI

Query:  KSLKRTFQVIVEIHPTAKGLLNKLFPYYNDLSYVFGKDRATGARAETFANIRSNVPANFN-GFPFDDANDPEILMMDSQGLDMSLDEL
             +    ++ HP AKGLLNK FPYY+DLSYVFGKDR T  R++TF N+ SNVP  FN      D+ D +I MM SQG+ MS DE+
Subjt:  KSLKRTFQVIVEIHPTAKGLLNKLFPYYNDLSYVFGKDRATGARAETFANIRSNVPANFN-GFPFDDANDPEILMMDSQGLDMSLDEL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT5G41980.1 CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912)1.8e-0540.68Show/hide
Query:  VAMLLYILAHDVKNRMIQREFVRSGETISRHFNIVLLAILRLHDELLKKPHPVPNSCID
        +A+ L+I+ H+++ R +Q  F  SGETISRHFN VL A++ +  +  +     PNS  D
Subjt:  VAMLLYILAHDVKNRMIQREFVRSGETISRHFNIVLLAILRLHDELLKKPHPVPNSCID


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTTGCCATGCTTCTCTACATACTAGCGCACGACGTGAAGAATCGAATGATTCAAAGAGAGTTTGTGCGGTCTGGTGAGACAATTTCTAGGCATTTTAATATAGTATT
GTTGGCAATTTTACGTTTGCATGACGAGTTGCTGAAAAAACCGCATCCAGTACCAAACTCATGCATAGATCTCCGATGGAAGTGGTATGAGCTCCAACGGATGATGGTAG
AGAAGTTGTTAGGCTGTGACATCCAGGGATCGTCGACAATAGAATGTCGGATAAAATCCCTTAAGAGAACGTTTCAGGTCATCGTAGAAATCCATCCTACAGCCAAGGGC
CTCCTCAACAAATTGTTTCCTTATTATAATGACCTGTCGTATGTTTTTGGGAAAGATCGGGCTACAGGAGCAAGAGCAGAGACCTTCGCTAATATAAGGTCCAATGTGCC
AGCCAATTTCAATGGTTTTCCCTTCGATGATGCTAATGATCCGGAGATCCTCATGATGGATAGTCAGGGACTGGACATGTCGCTTGATGAGCTCATGGACACACAACCAG
GTCGATCGAGTGATGAAAGAAATGCTTCGAGCGGAAGCAAGAGGAAACGAGGAGGACAGATGGTTGAAACGATCGAGGTCATTTGCAATGCAAAGAACGTCAACTGGAGG
ACGAATATGGTGCAGAAGTTGTGA
mRNA sequenceShow/hide mRNA sequence
ATGGTTGCCATGCTTCTCTACATACTAGCGCACGACGTGAAGAATCGAATGATTCAAAGAGAGTTTGTGCGGTCTGGTGAGACAATTTCTAGGCATTTTAATATAGTATT
GTTGGCAATTTTACGTTTGCATGACGAGTTGCTGAAAAAACCGCATCCAGTACCAAACTCATGCATAGATCTCCGATGGAAGTGGTATGAGCTCCAACGGATGATGGTAG
AGAAGTTGTTAGGCTGTGACATCCAGGGATCGTCGACAATAGAATGTCGGATAAAATCCCTTAAGAGAACGTTTCAGGTCATCGTAGAAATCCATCCTACAGCCAAGGGC
CTCCTCAACAAATTGTTTCCTTATTATAATGACCTGTCGTATGTTTTTGGGAAAGATCGGGCTACAGGAGCAAGAGCAGAGACCTTCGCTAATATAAGGTCCAATGTGCC
AGCCAATTTCAATGGTTTTCCCTTCGATGATGCTAATGATCCGGAGATCCTCATGATGGATAGTCAGGGACTGGACATGTCGCTTGATGAGCTCATGGACACACAACCAG
GTCGATCGAGTGATGAAAGAAATGCTTCGAGCGGAAGCAAGAGGAAACGAGGAGGACAGATGGTTGAAACGATCGAGGTCATTTGCAATGCAAAGAACGTCAACTGGAGG
ACGAATATGGTGCAGAAGTTGTGA
Protein sequenceShow/hide protein sequence
MVAMLLYILAHDVKNRMIQREFVRSGETISRHFNIVLLAILRLHDELLKKPHPVPNSCIDLRWKWYELQRMMVEKLLGCDIQGSSTIECRIKSLKRTFQVIVEIHPTAKG
LLNKLFPYYNDLSYVFGKDRATGARAETFANIRSNVPANFNGFPFDDANDPEILMMDSQGLDMSLDELMDTQPGRSSDERNASSGSKRKRGGQMVETIEVICNAKNVNWR
TNMVQKL