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PI0016283 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0016283
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionGag/pol protein
Genome locationchr06:13109148..13110102
RNA-Seq ExpressionPI0016283
SyntenyPI0016283
Gene Ontology termsGO:0006508 - proteolysis (biological process)
GO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008234 - cysteine-type peptidase activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0040193.1 gag/pol protein [Cucumis melo var. makuwa]8.7e-5875.32Show/hide
Query:  MSSSIIALLKNEKLTGDNYATWKSNLNMILVIDDLRFVLMEECPPSPVRNASQTVRDAYDRWTKANEKARVYILASMSDVLSKKHESMVTARQIMDSLQE
        MSSSIIALLK ++LTG NY TWKS LNMILVI DLR +LME+CPP P +NASQ+V+DAYD WTK N+KAR+YIL SM D+LSKKHE MVTARQIMDS++E
Subjt:  MSSSIIALLKNEKLTGDNYATWKSNLNMILVIDDLRFVLMEECPPSPVRNASQTVRDAYDRWTKANEKARVYILASMSDVLSKKHESMVTARQIMDSLQE

Query:  MFGQPSIQIRHEAIKYVYNARMKEGQSVREHVLDMMVQFNVAETNGAVIDEQSQ
        MFGQPSIQI+ EAIKYVYN  MKE QSVREHVLDM+V FN+AE N  V DE+SQ
Subjt:  MFGQPSIQIRHEAIKYVYNARMKEGQSVREHVLDMMVQFNVAETNGAVIDEQSQ

KAA0063887.1 gag/pol protein [Cucumis melo var. makuwa]8.9e-6380.52Show/hide
Query:  MSSSIIALLKNEKLTGDNYATWKSNLNMILVIDDLRFVLMEECPPSPVRNASQTVRDAYDRWTKANEKARVYILASMSDVLSKKHESMVTARQIMDSLQE
        MSSSIIALLK ++LTG+NYATWKS LNMILVI DLRFVLMEECPP P +NASQ+V+DAYD WTKAN+KA +Y+LAS+SD+LSKKHE MVTARQIMDSL+E
Subjt:  MSSSIIALLKNEKLTGDNYATWKSNLNMILVIDDLRFVLMEECPPSPVRNASQTVRDAYDRWTKANEKARVYILASMSDVLSKKHESMVTARQIMDSLQE

Query:  MFGQPSIQIRHEAIKYVYNARMKEGQSVREHVLDMMVQFNVAETNGAVIDEQSQ
        MFGQPSIQI+ EAIKYVYNARMKEGQSVREHVL M+V FNVAE N A+ DE+SQ
Subjt:  MFGQPSIQIRHEAIKYVYNARMKEGQSVREHVLDMMVQFNVAETNGAVIDEQSQ

TYK00843.1 gag/pol protein [Cucumis melo var. makuwa]9.2e-6079.22Show/hide
Query:  MSSSIIALLKNEKLTGDNYATWKSNLNMILVIDDLRFVLMEECPPSPVRNASQTVRDAYDRWTKANEKARVYILASMSDVLSKKHESMVTARQIMDSLQE
        MSSSIIALLK E LTG+NYA WKS LNMILVI DLRF+LMEECPP P +NAS+++RDAY+R TKAN+KA +YILASMSD+LSKKHE MVTARQIMDS +E
Subjt:  MSSSIIALLKNEKLTGDNYATWKSNLNMILVIDDLRFVLMEECPPSPVRNASQTVRDAYDRWTKANEKARVYILASMSDVLSKKHESMVTARQIMDSLQE

Query:  MFGQPSIQIRHEAIKYVYNARMKEGQSVREHVLDMMVQFNVAETNGAVIDEQSQ
        +F QPSIQI+ EAIKYVYNA MKEGQSVREH LDM+V FNVAE NGAVIDE+SQ
Subjt:  MFGQPSIQIRHEAIKYVYNARMKEGQSVREHVLDMMVQFNVAETNGAVIDEQSQ

TYK15919.1 gag/pol protein [Cucumis melo var. makuwa]8.9e-6380.52Show/hide
Query:  MSSSIIALLKNEKLTGDNYATWKSNLNMILVIDDLRFVLMEECPPSPVRNASQTVRDAYDRWTKANEKARVYILASMSDVLSKKHESMVTARQIMDSLQE
        MSSSIIALLK ++LTG+NYATWKS LNMILVI DLRFVLMEECPP P +NASQ+V+DAYD WTKAN+KA +Y+LAS+SD+LSKKHE MVTARQIMDSL+E
Subjt:  MSSSIIALLKNEKLTGDNYATWKSNLNMILVIDDLRFVLMEECPPSPVRNASQTVRDAYDRWTKANEKARVYILASMSDVLSKKHESMVTARQIMDSLQE

Query:  MFGQPSIQIRHEAIKYVYNARMKEGQSVREHVLDMMVQFNVAETNGAVIDEQSQ
        MFGQPSIQI+ EAIKYVYNARMKEGQSVREHVL M+V FNVAE N A+ DE+SQ
Subjt:  MFGQPSIQIRHEAIKYVYNARMKEGQSVREHVLDMMVQFNVAETNGAVIDEQSQ

XP_038882358.1 uncharacterized protein LOC120073622 [Benincasa hispida]1.5e-5772.08Show/hide
Query:  MSSSIIALLKNEKLTGDNYATWKSNLNMILVIDDLRFVLMEECPPSPVRNASQTVRDAYDRWTKANEKARVYILASMSDVLSKKHESMVTARQIMDSLQE
        M+SSII LL +EKL GDNY+ WKSNLN ILV+DDLRFVL EECP +P  NA++TVR+AYDRW KANEKAR+YILASMSDVL+KKHES+ TA++I+DSL+E
Subjt:  MSSSIIALLKNEKLTGDNYATWKSNLNMILVIDDLRFVLMEECPPSPVRNASQTVRDAYDRWTKANEKARVYILASMSDVLSKKHESMVTARQIMDSLQE

Query:  MFGQPSIQIRHEAIKYVYNARMKEGQSVREHVLDMMVQFNVAETNGAVIDEQSQ
        +FGQPS  +RHEAIK++Y  RMKEG SVREHVLDMM+ FN+AE NG  IDE +Q
Subjt:  MFGQPSIQIRHEAIKYVYNARMKEGQSVREHVLDMMVQFNVAETNGAVIDEQSQ

TrEMBL top hitse value%identityAlignment
A0A5A7VA67 Gag/pol protein4.3e-6380.52Show/hide
Query:  MSSSIIALLKNEKLTGDNYATWKSNLNMILVIDDLRFVLMEECPPSPVRNASQTVRDAYDRWTKANEKARVYILASMSDVLSKKHESMVTARQIMDSLQE
        MSSSIIALLK ++LTG+NYATWKS LNMILVI DLRFVLMEECPP P +NASQ+V+DAYD WTKAN+KA +Y+LAS+SD+LSKKHE MVTARQIMDSL+E
Subjt:  MSSSIIALLKNEKLTGDNYATWKSNLNMILVIDDLRFVLMEECPPSPVRNASQTVRDAYDRWTKANEKARVYILASMSDVLSKKHESMVTARQIMDSLQE

Query:  MFGQPSIQIRHEAIKYVYNARMKEGQSVREHVLDMMVQFNVAETNGAVIDEQSQ
        MFGQPSIQI+ EAIKYVYNARMKEGQSVREHVL M+V FNVAE N A+ DE+SQ
Subjt:  MFGQPSIQIRHEAIKYVYNARMKEGQSVREHVLDMMVQFNVAETNGAVIDEQSQ

A0A5D3BM47 Gag/pol protein4.5e-6079.22Show/hide
Query:  MSSSIIALLKNEKLTGDNYATWKSNLNMILVIDDLRFVLMEECPPSPVRNASQTVRDAYDRWTKANEKARVYILASMSDVLSKKHESMVTARQIMDSLQE
        MSSSIIALLK E LTG+NYA WKS LNMILVI DLRF+LMEECPP P +NAS+++RDAY+R TKAN+KA +YILASMSD+LSKKHE MVTARQIMDS +E
Subjt:  MSSSIIALLKNEKLTGDNYATWKSNLNMILVIDDLRFVLMEECPPSPVRNASQTVRDAYDRWTKANEKARVYILASMSDVLSKKHESMVTARQIMDSLQE

Query:  MFGQPSIQIRHEAIKYVYNARMKEGQSVREHVLDMMVQFNVAETNGAVIDEQSQ
        +F QPSIQI+ EAIKYVYNA MKEGQSVREH LDM+V FNVAE NGAVIDE+SQ
Subjt:  MFGQPSIQIRHEAIKYVYNARMKEGQSVREHVLDMMVQFNVAETNGAVIDEQSQ

A0A5D3D0D9 Gag/pol protein4.3e-6380.52Show/hide
Query:  MSSSIIALLKNEKLTGDNYATWKSNLNMILVIDDLRFVLMEECPPSPVRNASQTVRDAYDRWTKANEKARVYILASMSDVLSKKHESMVTARQIMDSLQE
        MSSSIIALLK ++LTG+NYATWKS LNMILVI DLRFVLMEECPP P +NASQ+V+DAYD WTKAN+KA +Y+LAS+SD+LSKKHE MVTARQIMDSL+E
Subjt:  MSSSIIALLKNEKLTGDNYATWKSNLNMILVIDDLRFVLMEECPPSPVRNASQTVRDAYDRWTKANEKARVYILASMSDVLSKKHESMVTARQIMDSLQE

Query:  MFGQPSIQIRHEAIKYVYNARMKEGQSVREHVLDMMVQFNVAETNGAVIDEQSQ
        MFGQPSIQI+ EAIKYVYNARMKEGQSVREHVL M+V FNVAE N A+ DE+SQ
Subjt:  MFGQPSIQIRHEAIKYVYNARMKEGQSVREHVLDMMVQFNVAETNGAVIDEQSQ

A0A5D3DQJ2 Gag/pol protein4.2e-5875.32Show/hide
Query:  MSSSIIALLKNEKLTGDNYATWKSNLNMILVIDDLRFVLMEECPPSPVRNASQTVRDAYDRWTKANEKARVYILASMSDVLSKKHESMVTARQIMDSLQE
        MSSSIIALLK ++LTG NY TWKS LNMILVI DLR +LME+CPP P +NASQ+V+DAYD WTK N+KAR+YIL SM D+LSKKHE MVTARQIMDS++E
Subjt:  MSSSIIALLKNEKLTGDNYATWKSNLNMILVIDDLRFVLMEECPPSPVRNASQTVRDAYDRWTKANEKARVYILASMSDVLSKKHESMVTARQIMDSLQE

Query:  MFGQPSIQIRHEAIKYVYNARMKEGQSVREHVLDMMVQFNVAETNGAVIDEQSQ
        MFGQPSIQI+ EAIKYVYN  MKE QSVREHVLDM+V FN+AE N  V DE+SQ
Subjt:  MFGQPSIQIRHEAIKYVYNARMKEGQSVREHVLDMMVQFNVAETNGAVIDEQSQ

A0A6J1DWL0 uncharacterized protein LOC1110247347.1e-5873.38Show/hide
Query:  MSSSIIALLKNEKLTGDNYATWKSNLNMILVIDDLRFVLMEECPPSPVRNASQTVRDAYDRWTKANEKARVYILASMSDVLSKKHESMVTARQIMDSLQE
        MS+SIIALL  +KL G+NY  WKSNLN ILVIDDLRFVL E+CP +PV NA+  VR+AYDRW K+N+KA+VYILAS+SDVL+KKHE  VT ++IMDSLQ 
Subjt:  MSSSIIALLKNEKLTGDNYATWKSNLNMILVIDDLRFVLMEECPPSPVRNASQTVRDAYDRWTKANEKARVYILASMSDVLSKKHESMVTARQIMDSLQE

Query:  MFGQPSIQIRHEAIKYVYNARMKEGQSVREHVLDMMVQFNVAETNGAVIDEQSQ
        MFGQPS+Q RHEA+K+VYN+RMKEG SVREHVL++MV FNVAE+NG VIDEQSQ
Subjt:  MFGQPSIQIRHEAIKYVYNARMKEGQSVREHVLDMMVQFNVAETNGAVIDEQSQ

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATAGGTTTCTTAGCATGTCTTCCTCAATTATAGCACTGCTTAAAAATGAAAAATTAACCGGTGATAATTATGCGACGTGGAAATCGAACCTGAATATGATTCTTGT
AATCGATGATCTACGCTTCGTTTTAATGGAGGAATGTCCTCCTTCCCCTGTTCGAAATGCATCCCAGACCGTCAGGGATGCATATGACCGCTGGACAAAGGCCAATGAAA
AGGCCCGAGTCTACATCTTGGCCAGTATGTCTGACGTACTGAGCAAGAAACATGAGTCCATGGTCACTGCACGTCAGATCATGGACTCCCTCCAGGAGATGTTTGGACAA
CCGTCCATTCAAATCCGGCACGAGGCTATTAAATACGTTTATAATGCCCGTATGAAGGAAGGCCAATCTGTTAGAGAACATGTTCTCGACATGATGGTCCAATTCAACGT
GGCAGAAACGAACGGGGCGGTCATTGACGAGCAAAGTCAGCAATGCGGTTATGAACAAGATAGAGTATACCATGACTACCCTCCTTAA
mRNA sequenceShow/hide mRNA sequence
ATGGATAGGTTTCTTAGCATGTCTTCCTCAATTATAGCACTGCTTAAAAATGAAAAATTAACCGGTGATAATTATGCGACGTGGAAATCGAACCTGAATATGATTCTTGT
AATCGATGATCTACGCTTCGTTTTAATGGAGGAATGTCCTCCTTCCCCTGTTCGAAATGCATCCCAGACCGTCAGGGATGCATATGACCGCTGGACAAAGGCCAATGAAA
AGGCCCGAGTCTACATCTTGGCCAGTATGTCTGACGTACTGAGCAAGAAACATGAGTCCATGGTCACTGCACGTCAGATCATGGACTCCCTCCAGGAGATGTTTGGACAA
CCGTCCATTCAAATCCGGCACGAGGCTATTAAATACGTTTATAATGCCCGTATGAAGGAAGGCCAATCTGTTAGAGAACATGTTCTCGACATGATGGTCCAATTCAACGT
GGCAGAAACGAACGGGGCGGTCATTGACGAGCAAAGTCAGCAATGCGGTTATGAACAAGATAGAGTATACCATGACTACCCTCCTTAA
Protein sequenceShow/hide protein sequence
MDRFLSMSSSIIALLKNEKLTGDNYATWKSNLNMILVIDDLRFVLMEECPPSPVRNASQTVRDAYDRWTKANEKARVYILASMSDVLSKKHESMVTARQIMDSLQEMFGQ
PSIQIRHEAIKYVYNARMKEGQSVREHVLDMMVQFNVAETNGAVIDEQSQQCGYEQDRVYHDYPP