; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

PI0016342 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0016342
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionTy3-gypsy retrotransposon protein
Genome locationchr12:19043050..19043238
RNA-Seq ExpressionPI0016342
SyntenyPI0016342
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0032133.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]1.9e-1272.58Show/hide
Query:  MVDITTEVAMTKMERKINLVMKVVKERDHEIVALRDQMKNHETVESSQTSAVKANDKRKVVL
        MVDIT E AMTKMERK+N  MKVV+ERDHEI+ALR QM+  ET ESSQT  VKA DKRK  L
Subjt:  MVDITTEVAMTKMERKINLVMKVVKERDHEIVALRDQMKNHETVESSQTSAVKANDKRKVVL

KAA0035353.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]5.7e-1270.97Show/hide
Query:  MVDITTEVAMTKMERKINLVMKVVKERDHEIVALRDQMKNHETVESSQTSAVKANDKRKVVL
        M D+T E  M +MERKIN +MKVVKERDHEIVAL+ Q+K +ET ESS+T AVKANDK KVVL
Subjt:  MVDITTEVAMTKMERKINLVMKVVKERDHEIVALRDQMKNHETVESSQTSAVKANDKRKVVL

KAA0039592.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]5.7e-1269.35Show/hide
Query:  MVDITTEVAMTKMERKINLVMKVVKERDHEIVALRDQMKNHETVESSQTSAVKANDKRKVVL
        MVDIT E AM +MERKINL+MKV++ERDHEI ALRDQM+  +T ESS+T  VKA+DK K VL
Subjt:  MVDITTEVAMTKMERKINLVMKVVKERDHEIVALRDQMKNHETVESSQTSAVKANDKRKVVL

KAA0066007.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]2.5e-1272.58Show/hide
Query:  MVDITTEVAMTKMERKINLVMKVVKERDHEIVALRDQMKNHETVESSQTSAVKANDKRKVVL
        MVD+T EV MT+MERKIN +MKVVKERDHE  AL+DQMK  ET +SS+TS VKANDK K VL
Subjt:  MVDITTEVAMTKMERKINLVMKVVKERDHEIVALRDQMKNHETVESSQTSAVKANDKRKVVL

TYK11101.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]2.5e-1272.58Show/hide
Query:  MVDITTEVAMTKMERKINLVMKVVKERDHEIVALRDQMKNHETVESSQTSAVKANDKRKVVL
        MVDIT E AMT+MERKINLVMKVVKE+DH+I ALR+QM+ HET +SSQT  VKA+DK K V+
Subjt:  MVDITTEVAMTKMERKINLVMKVVKERDHEIVALRDQMKNHETVESSQTSAVKANDKRKVVL

TrEMBL top hitse value%identityAlignment
A0A5A7SXS0 Ty3-gypsy retrotransposon protein2.7e-1270.97Show/hide
Query:  MVDITTEVAMTKMERKINLVMKVVKERDHEIVALRDQMKNHETVESSQTSAVKANDKRKVVL
        M D+T E  M +MERKIN +MKVVKERDHEIVAL+ Q+K +ET ESS+T AVKANDK KVVL
Subjt:  MVDITTEVAMTKMERKINLVMKVVKERDHEIVALRDQMKNHETVESSQTSAVKANDKRKVVL

A0A5A7T802 Ty3-gypsy retrotransposon protein2.7e-1269.35Show/hide
Query:  MVDITTEVAMTKMERKINLVMKVVKERDHEIVALRDQMKNHETVESSQTSAVKANDKRKVVL
        MVDIT E AM +MERKINL+MKV++ERDHEI ALRDQM+  +T ESS+T  VKA+DK K VL
Subjt:  MVDITTEVAMTKMERKINLVMKVVKERDHEIVALRDQMKNHETVESSQTSAVKANDKRKVVL

A0A5A7VFZ5 Ty3-gypsy retrotransposon protein1.2e-1272.58Show/hide
Query:  MVDITTEVAMTKMERKINLVMKVVKERDHEIVALRDQMKNHETVESSQTSAVKANDKRKVVL
        MVD+T EV MT+MERKIN +MKVVKERDHE  AL+DQMK  ET +SS+TS VKANDK K VL
Subjt:  MVDITTEVAMTKMERKINLVMKVVKERDHEIVALRDQMKNHETVESSQTSAVKANDKRKVVL

A0A5D3CH21 Ty3-gypsy retrotransposon protein1.2e-1272.58Show/hide
Query:  MVDITTEVAMTKMERKINLVMKVVKERDHEIVALRDQMKNHETVESSQTSAVKANDKRKVVL
        MVDIT E AMT+MERKINLVMKVVKE+DH+I ALR+QM+ HET +SSQT  VKA+DK K V+
Subjt:  MVDITTEVAMTKMERKINLVMKVVKERDHEIVALRDQMKNHETVESSQTSAVKANDKRKVVL

A0A5D3CS02 Ty3-gypsy retrotransposon protein9.4e-1372.58Show/hide
Query:  MVDITTEVAMTKMERKINLVMKVVKERDHEIVALRDQMKNHETVESSQTSAVKANDKRKVVL
        MVDIT E AMTKMERK+N  MKVV+ERDHEI+ALR QM+  ET ESSQT  VKA DKRK  L
Subjt:  MVDITTEVAMTKMERKINLVMKVVKERDHEIVALRDQMKNHETVESSQTSAVKANDKRKVVL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTAGACATAACAACTGAGGTAGCCATGACAAAGATGGAGAGAAAAATAAATCTTGTAATGAAAGTTGTTAAGGAGCGAGATCATGAAATTGTTGCCTTGAGAGATCA
AATGAAGAATCATGAAACTGTTGAGTCGAGCCAAACTTCTGCTGTCAAAGCTAACGATAAAAGGAAAGTTGTGTTGTAG
mRNA sequenceShow/hide mRNA sequence
ATGGTAGACATAACAACTGAGGTAGCCATGACAAAGATGGAGAGAAAAATAAATCTTGTAATGAAAGTTGTTAAGGAGCGAGATCATGAAATTGTTGCCTTGAGAGATCA
AATGAAGAATCATGAAACTGTTGAGTCGAGCCAAACTTCTGCTGTCAAAGCTAACGATAAAAGGAAAGTTGTGTTGTAG
Protein sequenceShow/hide protein sequence
MVDITTEVAMTKMERKINLVMKVVKERDHEIVALRDQMKNHETVESSQTSAVKANDKRKVVL