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PI0016349 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0016349
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrovirus-related Pol polyprotein from transposon RE1
Genome locationchr04:28624940..28626720
RNA-Seq ExpressionPI0016349
SyntenyPI0016349
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CAN73049.1 hypothetical protein VITISV_009802 [Vitis vinifera]3.8e-0552.94Show/hide
Query:  SAFIATFEMVTDPIWYVDSGAINHSKPGLANLNQRTEYHGNESLAVGQSNQ
        SAFIAT E+V+D  WY DSGA NH    L NL+ +++YH    LAVG  N+
Subjt:  SAFIATFEMVTDPIWYVDSGAINHSKPGLANLNQRTEYHGNESLAVGQSNQ

RVW78106.1 hypothetical protein CK203_049744 [Vitis vinifera]2.9e-0543.33Show/hide
Query:  GFTNYQNNGSHNKMSAFIATFEMVTDPIWYVDSGAINHSKPGLANLNQRTEYHGNESLAV
        G   ++  G H + S FIAT E+V+D  WY +SGA NH    L NL+ +++YHG + L V
Subjt:  GFTNYQNNGSHNKMSAFIATFEMVTDPIWYVDSGAINHSKPGLANLNQRTEYHGNESLAV

RVW90852.1 Retrovirus-related Pol polyprotein from transposon RE1 [Vitis vinifera]3.1e-0733.64Show/hide
Query:  HLLSSSLQQRIYGFTNYQNNGSHNKMSAFIATFEMVTDPIWYVDSGAINHSKPGLANLNQRTEYHGNESLAVGQ-SNQDGVV-EGKVEDGLYHMKLPIGI
        H    + Q      T   N+ + N M A +A+F  + D  WY+DSGA +H    +ANL   T Y G + + +G  S+ +GV+ +GK+E+GLY  K P+  
Subjt:  HLLSSSLQQRIYGFTNYQNNGSHNKMSAFIATFEMVTDPIWYVDSGAINHSKPGLANLNQRTEYHGNESLAVGQ-SNQDGVV-EGKVEDGLYHMKLPIGI

Query:  NSQPPFI
        N +  ++
Subjt:  NSQPPFI

RVX19941.1 hypothetical protein CK203_004466 [Vitis vinifera]1.4e-0737.23Show/hide
Query:  NKMSAFIATFEMVTDPIWYVDSGAINHSKPGLANLNQRTEYHGNESLAVGQSNQDGV----------------------VEGKVEDGLYHMKLP
        ++ SAFIAT E+V+D  WY DSGA NH    L NL+ +++YH    LAVG  N+  +                      ++GK+EDGLY + +P
Subjt:  NKMSAFIATFEMVTDPIWYVDSGAINHSKPGLANLNQRTEYHGNESLAVGQSNQDGV----------------------VEGKVEDGLYHMKLP

XP_030493874.1 uncharacterized protein LOC115709798 isoform X1 [Cannabis sativa]4.5e-0646.15Show/hide
Query:  QNNGSHNKMSAFIATFEMVTDPIWYVDSGAINHSKPGLANLNQRTEYHGNESLAVG---QSNQDG
        + N +   +SAFIAT EMV D  WY DSGA NH+    +N++Q+T+Y G E+L+VG   +  +DG
Subjt:  QNNGSHNKMSAFIATFEMVTDPIWYVDSGAINHSKPGLANLNQRTEYHGNESLAVG---QSNQDG

TrEMBL top hitse value%identityAlignment
A0A2N9IBW9 Uncharacterized protein9.8e-0741.49Show/hide
Query:  YGFTNYQNNGSHNKMSAFIATFEMVTDPIWYVDSGAINHSKPGLANLNQRT-EYHGNESLAVGQSNQDGVVEGKVEDGLYHMKLPIGINSQPPF
        Y F N     S   M A +AT   V+DP WY DSGA +H    LANLN R  EYHG + + VG    + ++ G  +DGLY   L   + S+ PF
Subjt:  YGFTNYQNNGSHNKMSAFIATFEMVTDPIWYVDSGAINHSKPGLANLNQRT-EYHGNESLAVGQSNQDGVVEGKVEDGLYHMKLPIGINSQPPF

A0A438I2E1 Retrovirus-related Pol polyprotein from transposon RE11.5e-0733.64Show/hide
Query:  HLLSSSLQQRIYGFTNYQNNGSHNKMSAFIATFEMVTDPIWYVDSGAINHSKPGLANLNQRTEYHGNESLAVGQ-SNQDGVV-EGKVEDGLYHMKLPIGI
        H    + Q      T   N+ + N M A +A+F  + D  WY+DSGA +H    +ANL   T Y G + + +G  S+ +GV+ +GK+E+GLY  K P+  
Subjt:  HLLSSSLQQRIYGFTNYQNNGSHNKMSAFIATFEMVTDPIWYVDSGAINHSKPGLANLNQRTEYHGNESLAVGQ-SNQDGVV-EGKVEDGLYHMKLPIGI

Query:  NSQPPFI
        N +  ++
Subjt:  NSQPPFI

A0A438KFG9 Uncharacterized protein6.8e-0837.23Show/hide
Query:  NKMSAFIATFEMVTDPIWYVDSGAINHSKPGLANLNQRTEYHGNESLAVGQSNQDGV----------------------VEGKVEDGLYHMKLP
        ++ SAFIAT E+V+D  WY DSGA NH    L NL+ +++YH    LAVG  N+  +                      ++GK+EDGLY + +P
Subjt:  NKMSAFIATFEMVTDPIWYVDSGAINHSKPGLANLNQRTEYHGNESLAVGQSNQDGV----------------------VEGKVEDGLYHMKLP

A0A803PQB9 Uncharacterized protein7.5e-0743.48Show/hide
Query:  NGSHNKMSAFIATFEMVTDPIWYVDSGAINHSKPGLANLNQRTEYHGNESLAVGQSNQDGVVEGKVEDG
        NG+++  SAF+AT EMV D  WYVDSGA +H      N+NQ+++Y+G E+L VG   Q        ++G
Subjt:  NGSHNKMSAFIATFEMVTDPIWYVDSGAINHSKPGLANLNQRTEYHGNESLAVGQSNQDGVVEGKVEDG

A0A803PTK8 Uncharacterized protein1.8e-0833.79Show/hide
Query:  NKMSAFIATFEMVTDPIWYVDSGAINHSKPGLANLNQRTEYHGNESLAVGQSNQDGVVE-GKVEDGLYHM-KLPIGINSQPPFIQKCEEEEGNLAFGYAN
        N  SAFIAT EMV D  WYVDSGA NH      NL  +T+Y+  E+L +G  N+  +   G ++DGLY +     G+++QP  + K      N    +  
Subjt:  NKMSAFIATFEMVTDPIWYVDSGAINHSKPGLANLNQRTEYHGNESLAVGQSNQDGVVE-GKVEDGLYHM-KLPIGINSQPPFIQKCEEEEGNLAFGYAN

Query:  PRTVKESSEDEENLISNK-MWAKRKGKRQRNGFDNQALQKAVRIS
          TV        + +S K  W KR G        N+ L K + ++
Subjt:  PRTVKESSEDEENLISNK-MWAKRKGKRQRNGFDNQALQKAVRIS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAGACCTTCTAATAAGCCCACATGCCAAGTTTGCAGAAAATATGGGCACTCTGCATTTATTGTCATCATCGTTACAACAAAGAATATATGGGTTCACCAACTACCA
AAATAATGGAAGTCACAACAAGATGAGCGCCTTCATAGCAACTTTTGAAATGGTAACCGACCCAATATGGTATGTTGATTCAGGAGCTATTAATCACAGCAAACCAGGGC
TTGCAAATCTAAATCAAAGAACTGAATATCATGGTAATGAATCTCTTGCTGTAGGACAAAGCAACCAAGATGGTGTTGTTGAAGGGAAAGTTGAAGATGGTCTCTACCAC
ATGAAGCTGCCTATAGGAATCAATTCTCAGCCACCATTCATTCAAAAATGCGAAGAGGAGGAGGGAAATTTGGCGTTTGGTTACGCGAATCCTAGAACAGTTAAGGAATC
TTCAGAGGACGAAGAAAATCTCATAAGCAACAAAATGTGGGCGAAAAGGAAGGGGAAGAGGCAAAGGAATGGTTTCGACAACCAAGCATTACAGAAAGCGGTTAGAATTT
CTATTGATAATAATAAGGAAGTGAGCAGCACTGAGAAAGAGGAGATGGAAAGTCTGTGGAAAACAAGAGAGATGAAAAGGGACGAAGAAAGAGGAAAAACCACCGTCAAA
ACAGAGGAGAGAGCTAAAGAGCTCAAATGA
mRNA sequenceShow/hide mRNA sequence
ATGGAAGACCTTCTAATAAGCCCACATGCCAAGTTTGCAGAAAATATGGGCACTCTGCATTTATTGTCATCATCGTTACAACAAAGAATATATGGGTTCACCAACTACCA
AAATAATGGAAGTCACAACAAGATGAGCGCCTTCATAGCAACTTTTGAAATGGTAACCGACCCAATATGGTATGTTGATTCAGGAGCTATTAATCACAGCAAACCAGGGC
TTGCAAATCTAAATCAAAGAACTGAATATCATGGTAATGAATCTCTTGCTGTAGGACAAAGCAACCAAGATGGTGTTGTTGAAGGGAAAGTTGAAGATGGTCTCTACCAC
ATGAAGCTGCCTATAGGAATCAATTCTCAGCCACCATTCATTCAAAAATGCGAAGAGGAGGAGGGAAATTTGGCGTTTGGTTACGCGAATCCTAGAACAGTTAAGGAATC
TTCAGAGGACGAAGAAAATCTCATAAGCAACAAAATGTGGGCGAAAAGGAAGGGGAAGAGGCAAAGGAATGGTTTCGACAACCAAGCATTACAGAAAGCGGTTAGAATTT
CTATTGATAATAATAAGGAAGTGAGCAGCACTGAGAAAGAGGAGATGGAAAGTCTGTGGAAAACAAGAGAGATGAAAAGGGACGAAGAAAGAGGAAAAACCACCGTCAAA
ACAGAGGAGAGAGCTAAAGAGCTCAAATGA
Protein sequenceShow/hide protein sequence
MEDLLISPHAKFAENMGTLHLLSSSLQQRIYGFTNYQNNGSHNKMSAFIATFEMVTDPIWYVDSGAINHSKPGLANLNQRTEYHGNESLAVGQSNQDGVVEGKVEDGLYH
MKLPIGINSQPPFIQKCEEEEGNLAFGYANPRTVKESSEDEENLISNKMWAKRKGKRQRNGFDNQALQKAVRISIDNNKEVSSTEKEEMESLWKTREMKRDEERGKTTVK
TEERAKELK