CuGenDBv2

Gene ID	PI0016388
Organism	Cucumis metuliferus PI 482460 (Melon (PI 482460) v1)
Description	40S ribosomal protein S27
Genome location	chr09:10445350..10447457
RNA-Seq Expression	PI0016388
Synteny	PI0016388
Gene Ontology terms	GO:0000028 - ribosomal small subunit assembly (biological process) GO:0006412 - translation (biological process) GO:0022627 - cytosolic small ribosomal subunit (cellular component) GO:0003723 - RNA binding (molecular function) GO:0003735 - structural constituent of ribosome (molecular function) GO:0046872 - metal ion binding (molecular function)
InterPro domains	IPR000592 - Ribosomal protein S27 IPR011332 - Zinc-binding ribosomal protein IPR023407 - Ribosomal protein S27, zinc-binding domain superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

KAF5449188.1 hypothetical protein F2P56_029664, partial [Juglans regia]

1.9e-42

100

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Query:  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRARLTEGCSFRRKGD
        MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRARLTEGCSFRRKGD
Subjt:  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRARLTEGCSFRRKGD

XP_002512685.1 40S ribosomal protein S27-2 [Ricinus communis]

1.9e-42

100

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Query:  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRARLTEGCSFRRKGD
        MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRARLTEGCSFRRKGD
Subjt:  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRARLTEGCSFRRKGD

XP_022953224.1 uncharacterized protein LOC111455834 [Cucurbita moschata]

1.9e-42

100

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Query:  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRARLTEGCSFRRKGD
        MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRARLTEGCSFRRKGD
Subjt:  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRARLTEGCSFRRKGD

XP_022991567.1 40S ribosomal protein S27-2-like [Cucurbita maxima]

1.9e-42

100

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Query:  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRARLTEGCSFRRKGD
        MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRARLTEGCSFRRKGD
Subjt:  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRARLTEGCSFRRKGD

XP_031384267.1 40S ribosomal protein S27-2 [Punica granatum]

2.5e-42

98.84

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Query:  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRARLTEGCSFRRKGD
        MVLQND+DLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRARLTEGCSFRRKGD
Subjt:  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRARLTEGCSFRRKGD

TrEMBL top hits

e value

%identity

Alignment

A0A5D3CUJ5 40S ribosomal protein S27

9.3e-43

100

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Query:  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRARLTEGCSFRRKGD
        MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRARLTEGCSFRRKGD
Subjt:  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRARLTEGCSFRRKGD

A0A6J1GM27 40S ribosomal protein S27

9.3e-43

100

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Query:  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRARLTEGCSFRRKGD
        MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRARLTEGCSFRRKGD
Subjt:  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRARLTEGCSFRRKGD

A0A6J1JM72 40S ribosomal protein S27

9.3e-43

100

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Query:  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRARLTEGCSFRRKGD
        MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRARLTEGCSFRRKGD
Subjt:  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRARLTEGCSFRRKGD

A0A6J1JTM3 40S ribosomal protein S27

9.3e-43

100

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Query:  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRARLTEGCSFRRKGD
        MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRARLTEGCSFRRKGD
Subjt:  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRARLTEGCSFRRKGD

B9RG16 40S ribosomal protein S27

9.3e-43

100

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Query:  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRARLTEGCSFRRKGD
        MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRARLTEGCSFRRKGD
Subjt:  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRARLTEGCSFRRKGD

SwissProt top hits

e value

%identity

Alignment

O64650 40S ribosomal protein S27-1

1.7e-41

92.86

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Query:  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRARLTEGCSFRRK
        MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVV+CGNCQT+LC PTGG+A+LTEGCSFR+K
Subjt:  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRARLTEGCSFRRK

P47903 40S ribosomal protein S27

4.3e-37

84.88

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Query:  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRARLTEGCSFRRKGD
        MVL +DIDLLNPPAELEK KHK KRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVV+CG+C +VLC PTG   RLTEGCSFRRK D
Subjt:  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRARLTEGCSFRRKGD

Q8L953 40S ribosomal protein S27-3

2.2e-41

94.05

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Query:  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRARLTEGCSFRRK
        MVLQNDIDLL+PP ELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGG+ARL EGCSFR+K
Subjt:  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRARLTEGCSFRRK

Q96564 40S ribosomal protein S27

7.6e-42

94.19

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Query:  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRARLTEGCSFRRKGD
        MVLQNDIDLLNPPAELEK KHK KRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVC  CQTVLCQPTGG+ARLTEGCSFRRKGD
Subjt:  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRARLTEGCSFRRKGD

Q9M2F1 40S ribosomal protein S27-2

1.6e-44

96.51

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Query:  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRARLTEGCSFRRKGD
        MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQT+LCQPTGG+A+LTEGCSFRRKGD
Subjt:  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRARLTEGCSFRRKGD

Arabidopsis top hits

e value

%identity

Alignment

AT2G45710.1 Zinc-binding ribosomal protein family protein

1.2e-42

92.86

Show/hide

Query:  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRARLTEGCSFRRK
        MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVV+CGNCQT+LC PTGG+A+LTEGCSFR+K
Subjt:  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRARLTEGCSFRRK

AT3G61110.1 ribosomal protein S27

1.2e-45

96.51

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Query:  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRARLTEGCSFRRKGD
        MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQT+LCQPTGG+A+LTEGCSFRRKGD
Subjt:  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRARLTEGCSFRRKGD

AT3G61111.1 Zinc-binding ribosomal protein family protein

7.5e-37

81.4

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Query:  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRARLTEGCSFRRKGD
        MVLQNDIDLLNPPAELEKRKHKLKRLV SPNS+FM V+C  C NITT+FSHSQTVVVCG CQ VLCQPTGG+A+LT GCSFR+  D
Subjt:  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRARLTEGCSFRRKGD

AT5G47930.1 Zinc-binding ribosomal protein family protein

1.6e-42

94.05

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Query:  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRARLTEGCSFRRK
        MVLQNDIDLL+PP ELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGG+ARL EGCSFR+K
Subjt:  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRARLTEGCSFRRK

Sequences

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CDS sequence

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ATGGTTCTTCAAAACGATATTGATTTGCTGAATCCTCCTGCTGAGCTAGAGAAGAGGAAGCACAAGCTCAAGCGTCTTGTGCAATCACCCAACTCCTTCTTCATGGATGT
CAAGTGCCAAGGATGCTTCAACATTACCACTGTCTTCAGCCACTCTCAAACTGTTGTGGTATGCGGTAACTGCCAGACAGTCTTATGCCAGCCAACAGGAGGACGTGCTA
GACTCACCGAGGGGTGTTCTTTCAGGAGAAAGGGTGATTGA

mRNA sequence

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CCACTGCTGCGGTCGTGAGCTTTTTTCGATTGGCTTCGCAGGATTTCCCTTCCCCTCTTTCCCCGGCTCCTTTCAAGATTTTTTCAAGATGGTTCTTCAAAACGATATTG
ATTTGCTGAATCCTCCTGCTGAGCTAGAGAAGAGGAAGCACAAGCTCAAGCGTCTTGTGCAATCACCCAACTCCTTCTTCATGGATGTCAAGTGCCAAGGATGCTTCAAC
ATTACCACTGTCTTCAGCCACTCTCAAACTGTTGTGGTATGCGGTAACTGCCAGACAGTCTTATGCCAGCCAACAGGAGGACGTGCTAGACTCACCGAGGGGTGTTCTTT
CAGGAGAAAGGGTGATTGATGATGTGGTTCTTTGTTTCATTTTGCTGGGAAGAAATTGCAAGTCTCTGTTTTGATCAATGGGTATATTTATTTTTCTTGTACGGTATCAG
ACTTGATTATGCTGTCTCTCCTAAATAGATTATATTTGGCTTTAGAGTTATCTGGTTTTGTTTAAAAGATGAATTTCATGTACTGAACTTTTAGCTGCATTTAGTAAAAG
CTTAACTTTCTTTTATCCATTCTTTATTGGGCACTATTTTAATCTGCATGAGAATCTTTCAATGGTCAAATATTTTAGTAGGAGTACTCGATCTGGCTCAACCATGTTTA
TACTTGTTGAGGAATATAGCTTTACCAAGAGTTTGGAGGTTATCCACCTTTTTGGATTATGAATTAACTCATTGTAATTCAGATACTACAAGATTACTGTAGGTTCTGTT
GAATATAAGTTGATCAAAAGCTCGAAAGTGAGGTCTTTGGTTAATGGGTAAATATTGTTTTT

Protein sequence

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MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRARLTEGCSFRRKGD

PI0016388 (gene) of Melon (PI 482460) v1 genome