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PI0016400 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0016400
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionReverse transcriptase domain-containing protein
Genome locationchr12:16025710..16026255
RNA-Seq ExpressionPI0016400
SyntenyPI0016400
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0006508 - proteolysis (biological process)
GO:0015074 - DNA integration (biological process)
GO:0090305 - nucleic acid phosphodiester bond hydrolysis (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
GO:0004190 - aspartic-type endopeptidase activity (molecular function)
GO:0004519 - endonuclease activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0031722.1 uncharacterized protein E6C27_scaffold139G005100 [Cucumis melo var. makuwa]9.2e-6370.88Show/hide
Query:  GKSHVDRLVEIEEQMLYLVEIPNVVRFLETHIQEISEKADVIDAVTVRLDGLPISELLTRVDTLETKAT--RTGIYEHGDSSTGSVAHIEERVGELDSSQ
        GK+  DRLVE+EEQMLYLVE+P+ +R+LE+ ++EI +K + IDAVT R++G PI EL+TRVD LET     RT  YE GDSSTGSVAHIEERV ELDSSQ
Subjt:  GKSHVDRLVEIEEQMLYLVEIPNVVRFLETHIQEISEKADVIDAVTVRLDGLPISELLTRVDTLETKAT--RTGIYEHGDSSTGSVAHIEERVGELDSSQ

Query:  KSIIEMINDVLEDFRAALDVVRNEIADVSTRVNFTMQAMANQALAGGAMQVNRVKIPKPKPFCGARDVKALENYTFDLEQYF
        K+++EMIN + EDFRA LDVVRNEIADV+ R+N TM+AMANQA AGGA+ V+RVKIP+PKPFCGARD KALENY FDLEQYF
Subjt:  KSIIEMINDVLEDFRAALDVVRNEIADVSTRVNFTMQAMANQALAGGAMQVNRVKIPKPKPFCGARDVKALENYTFDLEQYF

KAA0035532.1 uncharacterized protein E6C27_scaffold285G001980 [Cucumis melo var. makuwa]9.2e-6370.88Show/hide
Query:  GKSHVDRLVEIEEQMLYLVEIPNVVRFLETHIQEISEKADVIDAVTVRLDGLPISELLTRVDTLETKAT--RTGIYEHGDSSTGSVAHIEERVGELDSSQ
        GK+  DRLVE+EEQMLYLVE+P+ +R+LE+ ++EISEK ++IDAV  R++G PI EL+TRVD LET     RT  YE GDSSTGSVAHIEERV ELDSSQ
Subjt:  GKSHVDRLVEIEEQMLYLVEIPNVVRFLETHIQEISEKADVIDAVTVRLDGLPISELLTRVDTLETKAT--RTGIYEHGDSSTGSVAHIEERVGELDSSQ

Query:  KSIIEMINDVLEDFRAALDVVRNEIADVSTRVNFTMQAMANQALAGGAMQVNRVKIPKPKPFCGARDVKALENYTFDLEQYF
        K+++EMIN + EDFRA LDVVRNEIADV+ R++ TM+AMANQA AGGA+ V+RVKIP+PKPFCGARD KALENY FDLEQYF
Subjt:  KSIIEMINDVLEDFRAALDVVRNEIADVSTRVNFTMQAMANQALAGGAMQVNRVKIPKPKPFCGARDVKALENYTFDLEQYF

KAA0037220.1 reverse transcriptase [Cucumis melo var. makuwa]1.2e-6270.88Show/hide
Query:  GKSHVDRLVEIEEQMLYLVEIPNVVRFLETHIQEISEKADVIDAVTVRLDGLPISELLTRVDTLETKAT--RTGIYEHGDSSTGSVAHIEERVGELDSSQ
        GK+  DRLVE+EEQMLYLVE+P+ +R+LE+ ++EISEK + IDAV  R++G PI EL+TRVD LET     RT  YE GDSSTGSVAHIEERV ELDSSQ
Subjt:  GKSHVDRLVEIEEQMLYLVEIPNVVRFLETHIQEISEKADVIDAVTVRLDGLPISELLTRVDTLETKAT--RTGIYEHGDSSTGSVAHIEERVGELDSSQ

Query:  KSIIEMINDVLEDFRAALDVVRNEIADVSTRVNFTMQAMANQALAGGAMQVNRVKIPKPKPFCGARDVKALENYTFDLEQYF
        K+++EMIN + EDFRA LDVVRNEIADV+ R++ TM+AMANQA AGGA+ V+RVKIP+PKPFCGARD KALENY FDLEQYF
Subjt:  KSIIEMINDVLEDFRAALDVVRNEIADVSTRVNFTMQAMANQALAGGAMQVNRVKIPKPKPFCGARDVKALENYTFDLEQYF

KAA0050674.1 uncharacterized protein E6C27_scaffold673G001570 [Cucumis melo var. makuwa]9.2e-6371.43Show/hide
Query:  GKSHVDRLVEIEEQMLYLVEIPNVVRFLETHIQEISEKADVIDAVTVRLDGLPISELLTRVDTLETKAT--RTGIYEHGDSSTGSVAHIEERVGELDSSQ
        GK   DRLVE+EEQMLYLVE+P+ +R+LE+ ++EISEK + IDAV  R++G PI ELLTRVD LET     RT  YE GDSSTGSVAHIEERV ELDSSQ
Subjt:  GKSHVDRLVEIEEQMLYLVEIPNVVRFLETHIQEISEKADVIDAVTVRLDGLPISELLTRVDTLETKAT--RTGIYEHGDSSTGSVAHIEERVGELDSSQ

Query:  KSIIEMINDVLEDFRAALDVVRNEIADVSTRVNFTMQAMANQALAGGAMQVNRVKIPKPKPFCGARDVKALENYTFDLEQYF
        K+++EMIN + EDFRA LDVVRNEIADV+ R++ TM+AMANQA AGGA+ V+RVKIP+PKPFCGARD KALENY FDLEQYF
Subjt:  KSIIEMINDVLEDFRAALDVVRNEIADVSTRVNFTMQAMANQALAGGAMQVNRVKIPKPKPFCGARDVKALENYTFDLEQYF

TYK03099.1 reverse transcriptase [Cucumis melo var. makuwa]7.1e-6370.49Show/hide
Query:  MGKSHVDRLVEIEEQMLYLVEIPNVVRFLETHIQEISEKADVIDAVTVRLDGLPISELLTRVDTLETKAT--RTGIYEHGDSSTGSVAHIEERVGELDSS
        +GK+  DRLVE+EEQMLYLVE+P+ +R+LE+ ++EISEK + IDAV  R++G PI EL+TRVD LET     RT  YE GDSSTGSVAHIEERV ELDSS
Subjt:  MGKSHVDRLVEIEEQMLYLVEIPNVVRFLETHIQEISEKADVIDAVTVRLDGLPISELLTRVDTLETKAT--RTGIYEHGDSSTGSVAHIEERVGELDSS

Query:  QKSIIEMINDVLEDFRAALDVVRNEIADVSTRVNFTMQAMANQALAGGAMQVNRVKIPKPKPFCGARDVKALENYTFDLEQYF
        QK+++EMIN + EDFRA LDVVRNEIADV+ R++ TM+AMANQA AGGA+ V+RVKIP+PKPFCGARD KALENY FDLEQYF
Subjt:  QKSIIEMINDVLEDFRAALDVVRNEIADVSTRVNFTMQAMANQALAGGAMQVNRVKIPKPKPFCGARDVKALENYTFDLEQYF

TrEMBL top hitse value%identityAlignment
A0A5A7SKW3 Retrotrans_gag domain-containing protein4.5e-6370.88Show/hide
Query:  GKSHVDRLVEIEEQMLYLVEIPNVVRFLETHIQEISEKADVIDAVTVRLDGLPISELLTRVDTLETKAT--RTGIYEHGDSSTGSVAHIEERVGELDSSQ
        GK+  DRLVE+EEQMLYLVE+P+ +R+LE+ ++EI +K + IDAVT R++G PI EL+TRVD LET     RT  YE GDSSTGSVAHIEERV ELDSSQ
Subjt:  GKSHVDRLVEIEEQMLYLVEIPNVVRFLETHIQEISEKADVIDAVTVRLDGLPISELLTRVDTLETKAT--RTGIYEHGDSSTGSVAHIEERVGELDSSQ

Query:  KSIIEMINDVLEDFRAALDVVRNEIADVSTRVNFTMQAMANQALAGGAMQVNRVKIPKPKPFCGARDVKALENYTFDLEQYF
        K+++EMIN + EDFRA LDVVRNEIADV+ R+N TM+AMANQA AGGA+ V+RVKIP+PKPFCGARD KALENY FDLEQYF
Subjt:  KSIIEMINDVLEDFRAALDVVRNEIADVSTRVNFTMQAMANQALAGGAMQVNRVKIPKPKPFCGARDVKALENYTFDLEQYF

A0A5A7SW95 Retrotrans_gag domain-containing protein4.5e-6370.88Show/hide
Query:  GKSHVDRLVEIEEQMLYLVEIPNVVRFLETHIQEISEKADVIDAVTVRLDGLPISELLTRVDTLETKAT--RTGIYEHGDSSTGSVAHIEERVGELDSSQ
        GK+  DRLVE+EEQMLYLVE+P+ +R+LE+ ++EISEK ++IDAV  R++G PI EL+TRVD LET     RT  YE GDSSTGSVAHIEERV ELDSSQ
Subjt:  GKSHVDRLVEIEEQMLYLVEIPNVVRFLETHIQEISEKADVIDAVTVRLDGLPISELLTRVDTLETKAT--RTGIYEHGDSSTGSVAHIEERVGELDSSQ

Query:  KSIIEMINDVLEDFRAALDVVRNEIADVSTRVNFTMQAMANQALAGGAMQVNRVKIPKPKPFCGARDVKALENYTFDLEQYF
        K+++EMIN + EDFRA LDVVRNEIADV+ R++ TM+AMANQA AGGA+ V+RVKIP+PKPFCGARD KALENY FDLEQYF
Subjt:  KSIIEMINDVLEDFRAALDVVRNEIADVSTRVNFTMQAMANQALAGGAMQVNRVKIPKPKPFCGARDVKALENYTFDLEQYF

A0A5A7U607 Retrotrans_gag domain-containing protein4.5e-6371.43Show/hide
Query:  GKSHVDRLVEIEEQMLYLVEIPNVVRFLETHIQEISEKADVIDAVTVRLDGLPISELLTRVDTLETKAT--RTGIYEHGDSSTGSVAHIEERVGELDSSQ
        GK   DRLVE+EEQMLYLVE+P+ +R+LE+ ++EISEK + IDAV  R++G PI ELLTRVD LET     RT  YE GDSSTGSVAHIEERV ELDSSQ
Subjt:  GKSHVDRLVEIEEQMLYLVEIPNVVRFLETHIQEISEKADVIDAVTVRLDGLPISELLTRVDTLETKAT--RTGIYEHGDSSTGSVAHIEERVGELDSSQ

Query:  KSIIEMINDVLEDFRAALDVVRNEIADVSTRVNFTMQAMANQALAGGAMQVNRVKIPKPKPFCGARDVKALENYTFDLEQYF
        K+++EMIN + EDFRA LDVVRNEIADV+ R++ TM+AMANQA AGGA+ V+RVKIP+PKPFCGARD KALENY FDLEQYF
Subjt:  KSIIEMINDVLEDFRAALDVVRNEIADVSTRVNFTMQAMANQALAGGAMQVNRVKIPKPKPFCGARDVKALENYTFDLEQYF

A0A5D3BYE6 Reverse transcriptase3.4e-6370.49Show/hide
Query:  MGKSHVDRLVEIEEQMLYLVEIPNVVRFLETHIQEISEKADVIDAVTVRLDGLPISELLTRVDTLETKAT--RTGIYEHGDSSTGSVAHIEERVGELDSS
        +GK+  DRLVE+EEQMLYLVE+P+ +R+LE+ ++EISEK + IDAV  R++G PI EL+TRVD LET     RT  YE GDSSTGSVAHIEERV ELDSS
Subjt:  MGKSHVDRLVEIEEQMLYLVEIPNVVRFLETHIQEISEKADVIDAVTVRLDGLPISELLTRVDTLETKAT--RTGIYEHGDSSTGSVAHIEERVGELDSS

Query:  QKSIIEMINDVLEDFRAALDVVRNEIADVSTRVNFTMQAMANQALAGGAMQVNRVKIPKPKPFCGARDVKALENYTFDLEQYF
        QK+++EMIN + EDFRA LDVVRNEIADV+ R++ TM+AMANQA AGGA+ V+RVKIP+PKPFCGARD KALENY FDLEQYF
Subjt:  QKSIIEMINDVLEDFRAALDVVRNEIADVSTRVNFTMQAMANQALAGGAMQVNRVKIPKPKPFCGARDVKALENYTFDLEQYF

A0A5D3C4R1 Reverse transcriptase5.8e-6370.88Show/hide
Query:  GKSHVDRLVEIEEQMLYLVEIPNVVRFLETHIQEISEKADVIDAVTVRLDGLPISELLTRVDTLETKAT--RTGIYEHGDSSTGSVAHIEERVGELDSSQ
        GK+  DRLVE+EEQMLYLVE+P+ +R+LE+ ++EISEK + IDAV  R++G PI EL+TRVD LET     RT  YE GDSSTGSVAHIEERV ELDSSQ
Subjt:  GKSHVDRLVEIEEQMLYLVEIPNVVRFLETHIQEISEKADVIDAVTVRLDGLPISELLTRVDTLETKAT--RTGIYEHGDSSTGSVAHIEERVGELDSSQ

Query:  KSIIEMINDVLEDFRAALDVVRNEIADVSTRVNFTMQAMANQALAGGAMQVNRVKIPKPKPFCGARDVKALENYTFDLEQYF
        K+++EMIN + EDFRA LDVVRNEIADV+ R++ TM+AMANQA AGGA+ V+RVKIP+PKPFCGARD KALENY FDLEQYF
Subjt:  KSIIEMINDVLEDFRAALDVVRNEIADVSTRVNFTMQAMANQALAGGAMQVNRVKIPKPKPFCGARDVKALENYTFDLEQYF

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGCAAGTCCCATGTAGATCGATTGGTAGAGATTGAAGAGCAGATGCTCTACCTAGTGGAAATTCCGAACGTCGTCCGCTTCTTGGAAACCCATATTCAAGAAATTTC
AGAGAAAGCTGATGTTATTGATGCGGTAACCGTTCGCCTCGACGGATTACCTATAAGTGAGTTGTTGACAAGAGTTGACACTCTAGAGACAAAAGCTACAAGAACTGGTA
TCTACGAGCATGGAGACAGTTCAACGGGCTCTGTTGCCCACATAGAAGAACGGGTTGGCGAGCTAGATAGCTCTCAAAAGTCGATTATTGAGATGATAAATGACGTGTTA
GAAGATTTTCGTGCTGCTCTCGACGTCGTCAGGAATGAGATCGCAGACGTGAGCACGAGGGTGAACTTCACAATGCAAGCCATGGCAAACCAAGCTCTAGCTGGAGGAGC
AATGCAAGTTAACAGAGTGAAGATCCCTAAACCCAAACCCTTCTGTGGGGCAAGGGATGTGAAAGCCTTGGAGAACTACACCTTTGATCTCGAACAATACTTCTAG
mRNA sequenceShow/hide mRNA sequence
ATGGGCAAGTCCCATGTAGATCGATTGGTAGAGATTGAAGAGCAGATGCTCTACCTAGTGGAAATTCCGAACGTCGTCCGCTTCTTGGAAACCCATATTCAAGAAATTTC
AGAGAAAGCTGATGTTATTGATGCGGTAACCGTTCGCCTCGACGGATTACCTATAAGTGAGTTGTTGACAAGAGTTGACACTCTAGAGACAAAAGCTACAAGAACTGGTA
TCTACGAGCATGGAGACAGTTCAACGGGCTCTGTTGCCCACATAGAAGAACGGGTTGGCGAGCTAGATAGCTCTCAAAAGTCGATTATTGAGATGATAAATGACGTGTTA
GAAGATTTTCGTGCTGCTCTCGACGTCGTCAGGAATGAGATCGCAGACGTGAGCACGAGGGTGAACTTCACAATGCAAGCCATGGCAAACCAAGCTCTAGCTGGAGGAGC
AATGCAAGTTAACAGAGTGAAGATCCCTAAACCCAAACCCTTCTGTGGGGCAAGGGATGTGAAAGCCTTGGAGAACTACACCTTTGATCTCGAACAATACTTCTAG
Protein sequenceShow/hide protein sequence
MGKSHVDRLVEIEEQMLYLVEIPNVVRFLETHIQEISEKADVIDAVTVRLDGLPISELLTRVDTLETKATRTGIYEHGDSSTGSVAHIEERVGELDSSQKSIIEMINDVL
EDFRAALDVVRNEIADVSTRVNFTMQAMANQALAGGAMQVNRVKIPKPKPFCGARDVKALENYTFDLEQYF