; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

PI0016406 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0016406
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRibonuclease H
Genome locationchr07:19110111..19111310
RNA-Seq ExpressionPI0016406
SyntenyPI0016406
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0006310 - DNA recombination (biological process)
GO:0015074 - DNA integration (biological process)
GO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic (biological process)
GO:0005634 - nucleus (cellular component)
GO:0030430 - host cell cytoplasm (cellular component)
GO:0003723 - RNA binding (molecular function)
GO:0003887 - DNA-directed DNA polymerase activity (molecular function)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR001584 - Integrase, catalytic core
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_031738551.1 LOW QUALITY PROTEIN: uncharacterized protein LOC101203611 [Cucumis sativus]7.5e-18982.46Show/hide
Query:  MLVIHQVKEEWETRDAKLVPYSQYVTKL--------------KDNQMADVLATLAVMFDLNLECELYPIQITKRDASAYCMNIENDNKPWYFDIKQYIKC
        MLVIHQVKEEWETRDAKL PYSQY+ KL              +DN+MAD LATLAVMF+LNLE ELYPIQITKRDA AYCMNIENDNKPWYFDIKQYIKC
Subjt:  MLVIHQVKEEWETRDAKLVPYSQYVTKL--------------KDNQMADVLATLAVMFDLNLECELYPIQITKRDASAYCMNIENDNKPWYFDIKQYIKC

Query:  REYPYRASENDKRTIRRLTMNFFLSGEVLYKRNHDMVLLWC-----------EIHEGICGTHANGHMMARQILRSSYYWTMMKSNCIKYARECKKCQIYM
        REYPY AS+N KRTIRRL MNFFLSGEVLYKRNHDMVLL C           EIHEGICGTHANGH MARQILRS YYWT M+S+CIKYARECKKCQIYM
Subjt:  REYPYRASENDKRTIRRLTMNFFLSGEVLYKRNHDMVLLWC-----------EIHEGICGTHANGHMMARQILRSSYYWTMMKSNCIKYARECKKCQIYM

Query:  DKIHAAASPLHVLSAPWPFSLWGMDVIGPIDPKASNGHRFILVAIDNFTKWIEATSYCNITKGVVLKFIKKELICRYGLLEGIITDNAKNLNNQMMDELC
        D+IHAAASPLHVLSAPWPFSLWG+DVIGPIDPKASNGHRFILVAID FTKWIEA SYCN+T+GVVLKFIKKELICRYGL EGIITDNAKNLNN+MMDELC
Subjt:  DKIHAAASPLHVLSAPWPFSLWGMDVIGPIDPKASNGHRFILVAIDNFTKWIEATSYCNITKGVVLKFIKKELICRYGLLEGIITDNAKNLNNQMMDELC

Query:  EQFKINHQNSTPYRPKMNGAIKA----------KMTTTYKDWHEILPYALHGYRTSVRTSTGATPFSLVYDMEAILPLEVEIPSLRVLMEAKLDEVEWI
        E+FKINH+NSTPYRPKMNGA++A          KMTTTYKDWHEILP+ALHGYRTSVRTSTGATPFSLVY MEA+LPLEVEIPSLRVLMEAKLDE EWI
Subjt:  EQFKINHQNSTPYRPKMNGAIKA----------KMTTTYKDWHEILPYALHGYRTSVRTSTGATPFSLVYDMEAILPLEVEIPSLRVLMEAKLDEVEWI

XP_031738857.1 LOW QUALITY PROTEIN: uncharacterized protein LOC116402780 [Cucumis sativus]3.1e-19082.96Show/hide
Query:  MLVIHQVKEEWETRDAKLVPYSQYVTKL--------------KDNQMADVLATLAVMFDLNLECELYPIQITKRDASAYCMNIENDNKPWYFDIKQYIKC
        MLVIHQVKEEWETRDAKLVPYSQY+ KL              +DN+MAD LATLAVMF+LNLE ELYPIQITKRDA AYCMNIENDNKPWYFDIKQYIKC
Subjt:  MLVIHQVKEEWETRDAKLVPYSQYVTKL--------------KDNQMADVLATLAVMFDLNLECELYPIQITKRDASAYCMNIENDNKPWYFDIKQYIKC

Query:  REYPYRASENDKRTIRRLTMNFFLSGEVLYKRNHDMVLLWC-----------EIHEGICGTHANGHMMARQILRSSYYWTMMKSNCIKYARECKKCQIYM
        REYPY AS+NDKRTIRRL MNFFLSGEVLYKRNHDMVLL C           EIHEGICGTHANGH MARQILRS YYWT M+S+CIKYARECKKCQIYM
Subjt:  REYPYRASENDKRTIRRLTMNFFLSGEVLYKRNHDMVLLWC-----------EIHEGICGTHANGHMMARQILRSSYYWTMMKSNCIKYARECKKCQIYM

Query:  DKIHAAASPLHVLSAPWPFSLWGMDVIGPIDPKASNGHRFILVAIDNFTKWIEATSYCNITKGVVLKFIKKELICRYGLLEGIITDNAKNLNNQMMDELC
        D+IHAAASPLHVLSAPWPFSLWG+DVIGPIDPKASNGHRFILVAID FTKWIEA SYCN+T+GVVLKFIKKELICRYGL EGIITDNAKNLNN+MMDELC
Subjt:  DKIHAAASPLHVLSAPWPFSLWGMDVIGPIDPKASNGHRFILVAIDNFTKWIEATSYCNITKGVVLKFIKKELICRYGLLEGIITDNAKNLNNQMMDELC

Query:  EQFKINHQNSTPYRPKMNGAIKA----------KMTTTYKDWHEILPYALHGYRTSVRTSTGATPFSLVYDMEAILPLEVEIPSLRVLMEAKLDEVEWI
        E+FKINH+NSTPYRPKMNGA++A          KMTTTYKDWHEILP+ALHGYRTSVRTSTGATPFSLVY MEA+LPLEVEIPSLRVLMEAKLDE EWI
Subjt:  EQFKINHQNSTPYRPKMNGAIKA----------KMTTTYKDWHEILPYALHGYRTSVRTSTGATPFSLVYDMEAILPLEVEIPSLRVLMEAKLDEVEWI

XP_031741309.1 LOW QUALITY PROTEIN: uncharacterized protein LOC105435093 [Cucumis sativus]1.5e-18982.71Show/hide
Query:  MLVIHQVKEEWETRDAKLVPYSQYVTKL--------------KDNQMADVLATLAVMFDLNLECELYPIQITKRDASAYCMNIENDNKPWYFDIKQYIKC
        MLVIHQVKEEWETRDAKLVPYSQY+ KL              +DN+MAD LATLAVMF+LNLE ELYPIQITKRDA AYCMNIENDNKPWYFDIKQYIKC
Subjt:  MLVIHQVKEEWETRDAKLVPYSQYVTKL--------------KDNQMADVLATLAVMFDLNLECELYPIQITKRDASAYCMNIENDNKPWYFDIKQYIKC

Query:  REYPYRASENDKRTIRRLTMNFFLSGEVLYKRNHDMVLLWC-----------EIHEGICGTHANGHMMARQILRSSYYWTMMKSNCIKYARECKKCQIYM
        REYPY AS+NDKRTIRRL MNFFLSGEVLYKRNHDMVLL C           EIHEGICGTHANGH MARQILRS YYWT M+S+CIKYARECKKCQIYM
Subjt:  REYPYRASENDKRTIRRLTMNFFLSGEVLYKRNHDMVLLWC-----------EIHEGICGTHANGHMMARQILRSSYYWTMMKSNCIKYARECKKCQIYM

Query:  DKIHAAASPLHVLSAPWPFSLWGMDVIGPIDPKASNGHRFILVAIDNFTKWIEATSYCNITKGVVLKFIKKELICRYGLLEGIITDNAKNLNNQMMDELC
        D+IHAAASPLHVLSAPWPFSLWG+DVIGPIDPKASNGHRFILVAID FTKWIEA SYCN+T+GVVLKFIKKELICRYGL EGIITDNAKNLNN+MMDELC
Subjt:  DKIHAAASPLHVLSAPWPFSLWGMDVIGPIDPKASNGHRFILVAIDNFTKWIEATSYCNITKGVVLKFIKKELICRYGLLEGIITDNAKNLNNQMMDELC

Query:  EQFKINHQNSTPYRPKMNGAIKA----------KMTTTYKDWHEILPYALHGYRTSVRTSTGATPFSLVYDMEAILPLEVEIPSLRVLMEAKLDEVEWI
        E+FKINH+NSTPY PKMNGA++A          KMTTTYKDWHEILP+ALHGYRTSVRTSTGATPFSLVY MEA+LPLEVEIPSLRVLMEAKLDE EWI
Subjt:  EQFKINHQNSTPYRPKMNGAIKA----------KMTTTYKDWHEILPYALHGYRTSVRTSTGATPFSLVYDMEAILPLEVEIPSLRVLMEAKLDEVEWI

XP_031741698.1 uncharacterized protein LOC116403895 [Cucumis sativus]8.0e-19183.21Show/hide
Query:  MLVIHQVKEEWETRDAKLVPYSQYVTKL--------------KDNQMADVLATLAVMFDLNLECELYPIQITKRDASAYCMNIENDNKPWYFDIKQYIKC
        MLVIHQVKEEWETRDAKLVPYSQY+ KL              +DN+MAD LATLAVMF+LNLE ELYPIQITKRDASAYCMNIENDNKPWYFDIKQYIKC
Subjt:  MLVIHQVKEEWETRDAKLVPYSQYVTKL--------------KDNQMADVLATLAVMFDLNLECELYPIQITKRDASAYCMNIENDNKPWYFDIKQYIKC

Query:  REYPYRASENDKRTIRRLTMNFFLSGEVLYKRNHDMVLLWC-----------EIHEGICGTHANGHMMARQILRSSYYWTMMKSNCIKYARECKKCQIYM
        REYPY AS+NDKRTIRRL MNFFLSGEVLYKRNHDMVLL C           EIHEGICGTHANGH MARQILRS YYWT M+S+CIKYARECKKCQIYM
Subjt:  REYPYRASENDKRTIRRLTMNFFLSGEVLYKRNHDMVLLWC-----------EIHEGICGTHANGHMMARQILRSSYYWTMMKSNCIKYARECKKCQIYM

Query:  DKIHAAASPLHVLSAPWPFSLWGMDVIGPIDPKASNGHRFILVAIDNFTKWIEATSYCNITKGVVLKFIKKELICRYGLLEGIITDNAKNLNNQMMDELC
        D+IHAAASPLHVLSAPWPFSLWG+DVIGPIDPKASNGHRFILVAID FTKWIEA SYCN+T+GVVLKFIKKELICRYGL EGIITDNAKNLNN+MMDELC
Subjt:  DKIHAAASPLHVLSAPWPFSLWGMDVIGPIDPKASNGHRFILVAIDNFTKWIEATSYCNITKGVVLKFIKKELICRYGLLEGIITDNAKNLNNQMMDELC

Query:  EQFKINHQNSTPYRPKMNGAIKA----------KMTTTYKDWHEILPYALHGYRTSVRTSTGATPFSLVYDMEAILPLEVEIPSLRVLMEAKLDEVEWI
        E+FKINH+NSTPYRPKMNGA++A          KMTTTYKDWHEILP+ALHGYRTSVRTSTGATPFSLVY MEA+LPLEVEIPSLRVLMEAKLDE EWI
Subjt:  EQFKINHQNSTPYRPKMNGAIKA----------KMTTTYKDWHEILPYALHGYRTSVRTSTGATPFSLVYDMEAILPLEVEIPSLRVLMEAKLDEVEWI

XP_031742240.1 LOW QUALITY PROTEIN: uncharacterized protein LOC116404130 [Cucumis sativus]6.8e-19082.71Show/hide
Query:  MLVIHQVKEEWETRDAKLVPYSQYVTKL--------------KDNQMADVLATLAVMFDLNLECELYPIQITKRDASAYCMNIENDNKPWYFDIKQYIKC
        MLVIHQVKEEWETRDAKLVPYSQY+ KL              +DN+MAD LATLAVMF+LNLE ELYPIQITKRDA AYCMNIENDNKPWYFDIKQYIKC
Subjt:  MLVIHQVKEEWETRDAKLVPYSQYVTKL--------------KDNQMADVLATLAVMFDLNLECELYPIQITKRDASAYCMNIENDNKPWYFDIKQYIKC

Query:  REYPYRASENDKRTIRRLTMNFFLSGEVLYKRNHDMVLLWC-----------EIHEGICGTHANGHMMARQILRSSYYWTMMKSNCIKYARECKKCQIYM
        REYPY AS+NDKRTI+RL MNFFLSGEVLYKRNHDMVLL C           EIHEGICGTHANGH MARQILRS YYWT M+S+CIKYARECKKCQIYM
Subjt:  REYPYRASENDKRTIRRLTMNFFLSGEVLYKRNHDMVLLWC-----------EIHEGICGTHANGHMMARQILRSSYYWTMMKSNCIKYARECKKCQIYM

Query:  DKIHAAASPLHVLSAPWPFSLWGMDVIGPIDPKASNGHRFILVAIDNFTKWIEATSYCNITKGVVLKFIKKELICRYGLLEGIITDNAKNLNNQMMDELC
        D+IHAAASPLHVLSAPWPFSLWG+DVIGPIDPKASNGHRFILVAID FTKWIEA SYCN+T+GVVLKFIKKELICRYGL EGIITDNAKNLNN+MMDELC
Subjt:  DKIHAAASPLHVLSAPWPFSLWGMDVIGPIDPKASNGHRFILVAIDNFTKWIEATSYCNITKGVVLKFIKKELICRYGLLEGIITDNAKNLNNQMMDELC

Query:  EQFKINHQNSTPYRPKMNGAIKA----------KMTTTYKDWHEILPYALHGYRTSVRTSTGATPFSLVYDMEAILPLEVEIPSLRVLMEAKLDEVEWI
        E+FKINH+NSTPYRPKMNGA++A          KMTTTYKDWHEILP+ALHGYRTSVRTSTGATPFSLVY MEA+LPLEVEIPSLRVLMEAKLDE EWI
Subjt:  EQFKINHQNSTPYRPKMNGAIKA----------KMTTTYKDWHEILPYALHGYRTSVRTSTGATPFSLVYDMEAILPLEVEIPSLRVLMEAKLDEVEWI

TrEMBL top hitse value%identityAlignment
A0A5A7T0A1 Ribonuclease H1.1e-18881.95Show/hide
Query:  MLVIHQVKEEWETRDAKLVPYSQYVTKL--------------KDNQMADVLATLAVMFDLNLECELYPIQITKRDASAYCMNIENDNKPWYFDIKQYIKC
        MLVIHQVKEEWE RDAKLVPYSQYVTKL              +DN+MAD LATLAVMFDLNLE EL+PIQITKRD  AYCMN+ NDNKPWYFDIKQYIKC
Subjt:  MLVIHQVKEEWETRDAKLVPYSQYVTKL--------------KDNQMADVLATLAVMFDLNLECELYPIQITKRDASAYCMNIENDNKPWYFDIKQYIKC

Query:  REYPYRASENDKRTIRRLTMNFFLSGEVLYKRNHDMVLLWC-----------EIHEGICGTHANGHMMARQILRSSYYWTMMKSNCIKYARECKKCQIYM
        REYPY ASENDKRTIRRL MNFFLSGEVLYKRNHDMVLL C           +I+EGICGTHANGHMMARQILRS YYWT M+S+CIKYARECKKCQIYM
Subjt:  REYPYRASENDKRTIRRLTMNFFLSGEVLYKRNHDMVLLWC-----------EIHEGICGTHANGHMMARQILRSSYYWTMMKSNCIKYARECKKCQIYM

Query:  DKIHAAASPLHVLSAPWPFSLWGMDVIGPIDPKASNGHRFILVAIDNFTKWIEATSYCNITKGVVLKFIKKELICRYGLLEGIITDNAKNLNNQMMDELC
        DKIH AASPLH+LSAPWPFSLWGMDVIGPIDPKASNGHRFILVAID FTKWIEA SYCN+T+GVVLKFIKKELICRYGL EGIITDNAKNLNN+MMDELC
Subjt:  DKIHAAASPLHVLSAPWPFSLWGMDVIGPIDPKASNGHRFILVAIDNFTKWIEATSYCNITKGVVLKFIKKELICRYGLLEGIITDNAKNLNNQMMDELC

Query:  EQFKINHQNSTPYRPKMNGAIKA----------KMTTTYKDWHEILPYALHGYRTSVRTSTGATPFSLVYDMEAILPLEVEIPSLRVLMEAKLDEVEWI
        EQFKINH+NSTPYRPKMNGA++A          KMT TYKDWHE+LP+ALHGYRTSVRTSTGATPFSLVY ME +LPLEVEIPSLRVLMEAKLDE EWI
Subjt:  EQFKINHQNSTPYRPKMNGAIKA----------KMTTTYKDWHEILPYALHGYRTSVRTSTGATPFSLVYDMEAILPLEVEIPSLRVLMEAKLDEVEWI

A0A5A7T1X2 Ribonuclease H1.5e-18781.7Show/hide
Query:  MLVIHQVKEEWETRDAKLVPYSQYVTKL--------------KDNQMADVLATLAVMFDLNLECELYPIQITKRDASAYCMNIENDNKPWYFDIKQYIKC
        MLVIHQVKEEWETRDAKLVPYSQYVTKL              +DN+MAD LATLAVMFDLNLE EL+PIQITKRD  AYCMN+ NDNKPWYFDIKQYIKC
Subjt:  MLVIHQVKEEWETRDAKLVPYSQYVTKL--------------KDNQMADVLATLAVMFDLNLECELYPIQITKRDASAYCMNIENDNKPWYFDIKQYIKC

Query:  REYPYRASENDKRTIRRLTMNFFLSGEVLYKRNHDMVLLWC-----------EIHEGICGTHANGHMMARQILRSSYYWTMMKSNCIKYARECKKCQIYM
        REYPY ASENDKRTIRRL MNFFLSGEVLYKRNHDMVLL C           +I+EGICGTHANGHMMARQILRS YYWT M+S+CIKYARECKKCQIYM
Subjt:  REYPYRASENDKRTIRRLTMNFFLSGEVLYKRNHDMVLLWC-----------EIHEGICGTHANGHMMARQILRSSYYWTMMKSNCIKYARECKKCQIYM

Query:  DKIHAAASPLHVLSAPWPFSLWGMDVIGPIDPKASNGHRFILVAIDNFTKWIEATSYCNITKGVVLKFIKKELICRYGLLEGIITDNAKNLNNQMMDELC
        DKIH AAS LH+LSAPWPFSLWGMDVIGPIDPKASNGHRFILVAID FTKWIEA SYCN+T+GVVLKFIKKELICRYGL EGIITDNAKNLNN+MMDELC
Subjt:  DKIHAAASPLHVLSAPWPFSLWGMDVIGPIDPKASNGHRFILVAIDNFTKWIEATSYCNITKGVVLKFIKKELICRYGLLEGIITDNAKNLNNQMMDELC

Query:  EQFKINHQNSTPYRPKMNGAIKA----------KMTTTYKDWHEILPYALHGYRTSVRTSTGATPFSLVYDMEAILPLEVEIPSLRVLMEAKLDEVEWI
        EQFKINH+NSTPYRPKMNGA++A          KMT TYKDWHE+LP+ALHGYRTSVRTST ATPFSLVY ME +LPLEVEIPSLRVLMEAKLDE EWI
Subjt:  EQFKINHQNSTPYRPKMNGAIKA----------KMTTTYKDWHEILPYALHGYRTSVRTSTGATPFSLVYDMEAILPLEVEIPSLRVLMEAKLDEVEWI

A0A5A7T7R4 Ribonuclease H1.7e-18680.95Show/hide
Query:  MLVIHQVKEEWETRDAKLVPYSQYVTKL--------------KDNQMADVLATLAVMFDLNLECELYPIQITKRDASAYCMNIENDNKPWYFDIKQYIKC
        MLVIHQVKEEWETR AKLVPYSQYVTKL              +DN+MAD LATLAVMFDLNLE EL+PIQITKRD  AYCMN+ NDNKPWYFDIKQYIKC
Subjt:  MLVIHQVKEEWETRDAKLVPYSQYVTKL--------------KDNQMADVLATLAVMFDLNLECELYPIQITKRDASAYCMNIENDNKPWYFDIKQYIKC

Query:  REYPYRASENDKRTIRRLTMNFFLSGEVLYKRNHDMVLLWC-----------EIHEGICGTHANGHMMARQILRSSYYWTMMKSNCIKYARECKKCQIYM
        REYPY ASENDKRTIRRL MNFFLSGEVLYKRNHDMVLL C           +IHEGIC THANGHMMARQILRS YYWT M+S+CIKY RECKKCQIYM
Subjt:  REYPYRASENDKRTIRRLTMNFFLSGEVLYKRNHDMVLLWC-----------EIHEGICGTHANGHMMARQILRSSYYWTMMKSNCIKYARECKKCQIYM

Query:  DKIHAAASPLHVLSAPWPFSLWGMDVIGPIDPKASNGHRFILVAIDNFTKWIEATSYCNITKGVVLKFIKKELICRYGLLEGIITDNAKNLNNQMMDELC
        DKIH AASPLH+LSAPWPFSLWGMDVIGPIDPKASNGHRF LV+ID FTKWIE  S+CN+T+GVVLKFIKKELICRYGL EGIITDNAKNLNN+MMDELC
Subjt:  DKIHAAASPLHVLSAPWPFSLWGMDVIGPIDPKASNGHRFILVAIDNFTKWIEATSYCNITKGVVLKFIKKELICRYGLLEGIITDNAKNLNNQMMDELC

Query:  EQFKINHQNSTPYRPKMNGAIKA----------KMTTTYKDWHEILPYALHGYRTSVRTSTGATPFSLVYDMEAILPLEVEIPSLRVLMEAKLDEVEWI
        EQFKINH+NSTPYRPKMNGA++A          KMT TYKDWHE+LP+ALHGYRTSVRTSTGATPFSLVY MEA+LPLEVEIPSLRVLMEAKLDE EWI
Subjt:  EQFKINHQNSTPYRPKMNGAIKA----------KMTTTYKDWHEILPYALHGYRTSVRTSTGATPFSLVYDMEAILPLEVEIPSLRVLMEAKLDEVEWI

A0A5A7UQ60 Ribonuclease H1.2e-17979.6Show/hide
Query:  MLVIHQVKEEWETRDAKLVPYSQYVTKL--------------KDNQMADVLATLAVMFDLNLECELYPIQITKRDASAYCMNIENDNKPWYFDIKQYIKC
        MLVIHQVKEEWETRDAKLVPYSQYVTKL              ++NQMAD LATLAVMFDLNLE EL+PIQITKRD  AYCMN+ NDNKPWYFDIKQYIKC
Subjt:  MLVIHQVKEEWETRDAKLVPYSQYVTKL--------------KDNQMADVLATLAVMFDLNLECELYPIQITKRDASAYCMNIENDNKPWYFDIKQYIKC

Query:  REYPYRASENDKRTIRRLTMNFFLSGEVLYKRNHDMVLLWC-----------EIHEGICGTHANGHMMARQILRSSYYWTMMKSNCIKYARECKKCQIYM
        REYPY ASENDKR IRRLTMNFFLSGEVLYKRNHDMVLL C           +IHEGICGTHANGHMMARQILRS YYWT M+S+CIKYAR+CKKCQIYM
Subjt:  REYPYRASENDKRTIRRLTMNFFLSGEVLYKRNHDMVLLWC-----------EIHEGICGTHANGHMMARQILRSSYYWTMMKSNCIKYARECKKCQIYM

Query:  DKIHAAASPLHVLSAPWPFSLWGMDVIGPIDPKASNGHRFILVAIDNFTKWIEATSYCNITKGVVLKFIKKELICRYGLLEGIITDNAKNLNNQMMDELC
        DKIH AASPLH+ SA WPFSLWGMDVIG IDPKASNGH FILVAID FTKWIE  SYCN+T+GVVLKFIKKELICRYGL EGIIT+NAKNLNN+MMDEL 
Subjt:  DKIHAAASPLHVLSAPWPFSLWGMDVIGPIDPKASNGHRFILVAIDNFTKWIEATSYCNITKGVVLKFIKKELICRYGLLEGIITDNAKNLNNQMMDELC

Query:  EQFKINHQNSTPYRPKMNGAIKA----------KMTTTYKDWHEILPYALHGYRTSVRTSTGATPFSLVYDMEAILPLEVEIPSLRVLMEAKLDEVE
        EQFKINH+N TPYRPKMN A++A          KMT TYKDWHE+LP+ALHGYRTSVRTST ATPFS VY ME +LPLEVEIPSLRVLMEAKLDEVE
Subjt:  EQFKINHQNSTPYRPKMNGAIKA----------KMTTTYKDWHEILPYALHGYRTSVRTSTGATPFSLVYDMEAILPLEVEIPSLRVLMEAKLDEVE

A0A5D3DMD2 Ribonuclease H9.0e-18079.6Show/hide
Query:  MLVIHQVKEEWETRDAKLVPYSQYVTKL--------------KDNQMADVLATLAVMFDLNLECELYPIQITKRDASAYCMNIENDNKPWYFDIKQYIKC
        MLVIHQVKEEWETRDAKLVPYSQYVTKL              +DN+MAD LATLAVMFDLNLE EL+PIQITKRD  AYCMN+ NDNKPWYFDIKQYIKC
Subjt:  MLVIHQVKEEWETRDAKLVPYSQYVTKL--------------KDNQMADVLATLAVMFDLNLECELYPIQITKRDASAYCMNIENDNKPWYFDIKQYIKC

Query:  REYPYRASENDKRTIRRLTMNFFLSGEVLYKRNHDMVLLWC-----------EIHEGICGTHANGHMMARQILRSSYYWTMMKSNCIKYARECKKCQIYM
        REYPY ASENDKR IRRLTMNFFLSGEVLYKRNHDMVLL C           +IHEGICGTHANGHMMARQILRS YYWT M+S+CIKYAR+CKKCQIYM
Subjt:  REYPYRASENDKRTIRRLTMNFFLSGEVLYKRNHDMVLLWC-----------EIHEGICGTHANGHMMARQILRSSYYWTMMKSNCIKYARECKKCQIYM

Query:  DKIHAAASPLHVLSAPWPFSLWGMDVIGPIDPKASNGHRFILVAIDNFTKWIEATSYCNITKGVVLKFIKKELICRYGLLEGIITDNAKNLNNQMMDELC
        DKIH AASPLH+ SA WPFSLWGMDVIG IDPKASNGH FILVAID FTKWIE  SYCN+T+GVVLKFIKKELICRYGL EGIIT+NAKNLNN+MMDEL 
Subjt:  DKIHAAASPLHVLSAPWPFSLWGMDVIGPIDPKASNGHRFILVAIDNFTKWIEATSYCNITKGVVLKFIKKELICRYGLLEGIITDNAKNLNNQMMDELC

Query:  EQFKINHQNSTPYRPKMNGAIKA----------KMTTTYKDWHEILPYALHGYRTSVRTSTGATPFSLVYDMEAILPLEVEIPSLRVLMEAKLDEVE
        EQFKINH+N TPYRPKMN A++A          KMT TYKDWHE+LP+ALHGYRTSVRTST ATPFS VY ME +LPLEVEIPSLRVLMEAKLDEVE
Subjt:  EQFKINHQNSTPYRPKMNGAIKA----------KMTTTYKDWHEILPYALHGYRTSVRTSTGATPFSLVYDMEAILPLEVEIPSLRVLMEAKLDEVE

SwissProt top hitse value%identityAlignment
P03355 Gag-Pol polyprotein4.2e-0926.98Show/hide
Query:  THANGHMMARQILRS-SYYWTMMKSNCIKYARE-CKKC-QIYMDKIHAAASPLHVLSAPWPFSLWGMDVIGPIDPKASNGHRFILVAIDNFTKWIEATSY
        TH +   M   + RS S Y+ + +   +K   E CK C Q+   K  +A      +    P + W +D    I P    G++++LV ID F+ WIEA   
Subjt:  THANGHMMARQILRS-SYYWTMMKSNCIKYARE-CKKC-QIYMDKIHAAASPLHVLSAPWPFSLWGMDVIGPIDPKASNGHRFILVAIDNFTKWIEATSY

Query:  CNITKGVVLKFIKKELICRYGLLEGIITDNAKNLNNQMMDELCEQFKINHQNSTPYRPKMNGAI------------KAKMTTTYKDWHEILPYALHGYRT
           T  VV K + +E+  R+G+ + + TDN     +++   + +   I+ +    YRP+ +G +            K  + T  +DW  +LP AL+  R 
Subjt:  CNITKGVVLKFIKKELICRYGLLEGIITDNAKNLNNQMMDELCEQFKINHQNSTPYRPKMNGAI------------KAKMTTTYKDWHEILPYALHGYRT

Query:  SVRTSTGATPFSLVY
        +     G TP+ ++Y
Subjt:  SVRTSTGATPFSLVY

P03359 Gag-Pol polyprotein5.5e-0933.09Show/hide
Query:  GHRFILVAIDNFTKWIEATSYCNITKGVVLKFIKKELICRYGLLEGIITDNAKNLNNQMMDELCEQFKINHQNSTPYRP-------KMNGAIKAKMT---
        G+R++LV ID F+ W+EA      T   V K I +E++ R+G+ + + +DN      Q+   L  Q  IN +    YRP       +MN  IK  +T   
Subjt:  GHRFILVAIDNFTKWIEATSYCNITKGVVLKFIKKELICRYGLLEGIITDNAKNLNNQMMDELCEQFKINHQNSTPYRP-------KMNGAIKAKMT---

Query:  --TTYKDWHEILPYALHGYRTSVRTSTGATPFSLVY
          T  KDW  +LP AL   R +     G TP+ ++Y
Subjt:  --TTYKDWHEILPYALHGYRTSVRTSTGATPFSLVY

P03360 Gag-Pol polyprotein (Fragment)1.7e-1028.48Show/hide
Query:  PFSLWGMDVIGPIDPKASNGHRFILVAIDNFTKWIEATSYCNITKGVVLKFIKKELICRYGLLEGIITDNAKNLNNQMMDELCEQFKINHQNSTPYRPKM
        P   W +D    I   A  G++++LV +D F+ W+EA      T  VV+K +  ++I R+GL   I +DN      ++  +LCE   ++ +    YRP+ 
Subjt:  PFSLWGMDVIGPIDPKASNGHRFILVAIDNFTKWIEATSYCNITKGVVLKFIKKELICRYGLLEGIITDNAKNLNNQMMDELCEQFKINHQNSTPYRPKM

Query:  NGAIKAKMTTTYK------------DWHEILPYALHGYRTSVRTSTGATPFSLVYDME
        +G ++ +M  T K            DW  +LP AL   R +     G +PF ++Y ++
Subjt:  NGAIKAKMTTTYK------------DWHEILPYALHGYRTSVRTSTGATPFSLVYDME

P10273 Gag-Pol polyprotein5.5e-0931.62Show/hide
Query:  GHRFILVAIDNFTKWIEATSYCNITKGVVLKFIKKELICRYGLLEGIITDNAKNLNNQMMDELCEQFKINHQNSTPYRP-------KMNGAIKAKMT---
        G++++LV ID F+ W EA    + T  VV K + +E+  RYG+ + + +DN     +Q+   +     IN +    YRP       +MN +IK  +T   
Subjt:  GHRFILVAIDNFTKWIEATSYCNITKGVVLKFIKKELICRYGLLEGIITDNAKNLNNQMMDELCEQFKINHQNSTPYRP-------KMNGAIKAKMT---

Query:  --TTYKDWHEILPYALHGYRTSVRTSTGATPFSLVY
          T  KDW  +LP  L+  R +     G TPF ++Y
Subjt:  --TTYKDWHEILPYALHGYRTSVRTSTGATPFSLVY

Q09575 Uncharacterized protein K02A2.61.7e-1025.81Show/hide
Query:  EIHEGICGTHANGHMMARQILRSSYYWTMMKSNCIKYARECKKCQ--IYMDKIHAAASPLHVLSAPWPFSLWGMDVIGPIDPKASNGHRFILVAIDNFTK
        ++HEG       G +  +Q  RS  +W  + S+     R C  CQ    M ++    +P  V  APW      +D  GP+     NG  ++LV +D  TK
Subjt:  EIHEGICGTHANGHMMARQILRSSYYWTMMKSNCIKYARECKKCQ--IYMDKIHAAASPLHVLSAPWPFSLWGMDVIGPIDPKASNGHRFILVAIDNFTK

Query:  WIEATSYCNITKGVVLKFIKKELICRYGLLEGIITDNAKNLNNQMMDELCEQFKINHQNSTPYRPKMNGAIK----------AKMTTTYKDWHEILPYAL
        + E     +I+    +  + +E+   +G  E II+DN   L + +  ++C+   I H+ S  Y P+ NGA +          AK+        +IL   L
Subjt:  WIEATSYCNITKGVVLKFIKKELICRYGLLEGIITDNAKNLNNQMMDELCEQFKINHQNSTPYRPKMNGAIK----------AKMTTTYKDWHEILPYAL

Query:  HGYRTSVRTS-TGATPFSLVYDMEAILPLEVEIPSLRVLMEAKLDEVE
          YR +  ++  G+TP    +  +    + + +P+ RVL   KL + +
Subjt:  HGYRTSVRTS-TGATPFSLVYDMEAILPLEVEIPSLRVLMEAKLDEVE

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTAGTAATACATCAAGTTAAGGAAGAATGGGAAACAAGAGATGCTAAATTGGTGCCTTACAGCCAATATGTTACAAAATTGAAGGACAATCAAATGGCAGATGTATT
AGCCACCTTGGCAGTGATGTTTGATCTTAATCTTGAATGTGAACTTTATCCAATCCAAATTACAAAGCGAGATGCATCGGCATATTGTATGAATATTGAAAATGATAACA
AGCCATGGTATTTTGACATCAAGCAGTACATAAAGTGTAGAGAATATCCATATAGAGCTTCGGAGAATGACAAACGCACAATAAGAAGGTTGACCATGAACTTTTTCTTA
AGTGGTGAAGTTCTTTATAAAAGAAACCATGATATGGTGCTCCTTTGGTGTGAAATACATGAAGGAATATGTGGAACACATGCTAATGGACATATGATGGCTAGACAAAT
ACTTAGATCTAGTTATTATTGGACAATGATGAAATCAAATTGCATAAAATATGCAAGAGAATGTAAAAAGTGTCAAATTTATATGGATAAAATTCATGCAGCGGCATCTC
CATTGCATGTCTTGTCAGCACCTTGGCCCTTTTCTTTGTGGGGAATGGATGTTATTGGACCCATTGATCCTAAAGCCTCAAATGGTCATCGTTTTATTCTGGTGGCCATT
GATAACTTTACTAAATGGATAGAAGCGACATCTTATTGCAACATTACAAAAGGAGTAGTGCTCAAGTTTATAAAAAAAGAGTTGATTTGTCGTTATGGTCTCCTAGAGGG
TATTATTACAGATAATGCCAAAAACCTTAATAACCAAATGATGGACGAACTTTGTGAACAGTTTAAGATTAATCACCAAAATTCAACTCCATATCGCCCAAAGATGAATG
GGGCAATTAAGGCAAAAATGACAACAACATACAAAGATTGGCATGAAATTCTGCCGTATGCGCTACATGGATATCGCACGTCAGTTCGTACTTCAACAGGGGCAACACCA
TTTTCTTTGGTTTATGATATGGAAGCTATCCTGCCTTTAGAAGTTGAAATACCTTCATTGAGAGTCCTCATGGAAGCTAAGTTAGATGAAGTTGAATGGATATGA
mRNA sequenceShow/hide mRNA sequence
ATGTTAGTAATACATCAAGTTAAGGAAGAATGGGAAACAAGAGATGCTAAATTGGTGCCTTACAGCCAATATGTTACAAAATTGAAGGACAATCAAATGGCAGATGTATT
AGCCACCTTGGCAGTGATGTTTGATCTTAATCTTGAATGTGAACTTTATCCAATCCAAATTACAAAGCGAGATGCATCGGCATATTGTATGAATATTGAAAATGATAACA
AGCCATGGTATTTTGACATCAAGCAGTACATAAAGTGTAGAGAATATCCATATAGAGCTTCGGAGAATGACAAACGCACAATAAGAAGGTTGACCATGAACTTTTTCTTA
AGTGGTGAAGTTCTTTATAAAAGAAACCATGATATGGTGCTCCTTTGGTGTGAAATACATGAAGGAATATGTGGAACACATGCTAATGGACATATGATGGCTAGACAAAT
ACTTAGATCTAGTTATTATTGGACAATGATGAAATCAAATTGCATAAAATATGCAAGAGAATGTAAAAAGTGTCAAATTTATATGGATAAAATTCATGCAGCGGCATCTC
CATTGCATGTCTTGTCAGCACCTTGGCCCTTTTCTTTGTGGGGAATGGATGTTATTGGACCCATTGATCCTAAAGCCTCAAATGGTCATCGTTTTATTCTGGTGGCCATT
GATAACTTTACTAAATGGATAGAAGCGACATCTTATTGCAACATTACAAAAGGAGTAGTGCTCAAGTTTATAAAAAAAGAGTTGATTTGTCGTTATGGTCTCCTAGAGGG
TATTATTACAGATAATGCCAAAAACCTTAATAACCAAATGATGGACGAACTTTGTGAACAGTTTAAGATTAATCACCAAAATTCAACTCCATATCGCCCAAAGATGAATG
GGGCAATTAAGGCAAAAATGACAACAACATACAAAGATTGGCATGAAATTCTGCCGTATGCGCTACATGGATATCGCACGTCAGTTCGTACTTCAACAGGGGCAACACCA
TTTTCTTTGGTTTATGATATGGAAGCTATCCTGCCTTTAGAAGTTGAAATACCTTCATTGAGAGTCCTCATGGAAGCTAAGTTAGATGAAGTTGAATGGATATGA
Protein sequenceShow/hide protein sequence
MLVIHQVKEEWETRDAKLVPYSQYVTKLKDNQMADVLATLAVMFDLNLECELYPIQITKRDASAYCMNIENDNKPWYFDIKQYIKCREYPYRASENDKRTIRRLTMNFFL
SGEVLYKRNHDMVLLWCEIHEGICGTHANGHMMARQILRSSYYWTMMKSNCIKYARECKKCQIYMDKIHAAASPLHVLSAPWPFSLWGMDVIGPIDPKASNGHRFILVAI
DNFTKWIEATSYCNITKGVVLKFIKKELICRYGLLEGIITDNAKNLNNQMMDELCEQFKINHQNSTPYRPKMNGAIKAKMTTTYKDWHEILPYALHGYRTSVRTSTGATP
FSLVYDMEAILPLEVEIPSLRVLMEAKLDEVEWI