CuGenDBv2

Gene ID	PI0016439
Organism	Cucumis metuliferus PI 482460 (Melon (PI 482460) v1)
Description	Reverse transcriptase
Genome location	chr10:4803545..4803811
RNA-Seq Expression	PI0016439
Synteny	PI0016439
Gene Ontology terms	GO:0006278 - RNA-dependent DNA biosynthetic process (biological process) GO:0006508 - proteolysis (biological process) GO:0015074 - DNA integration (biological process) GO:0090305 - nucleic acid phosphodiester bond hydrolysis (biological process) GO:0003676 - nucleic acid binding (molecular function) GO:0003964 - RNA-directed DNA polymerase activity (molecular function) GO:0004190 - aspartic-type endopeptidase activity (molecular function) GO:0004519 - endonuclease activity (molecular function) GO:0008194 - UDP-glycosyltransferase activity (molecular function) GO:0008270 - zinc ion binding (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0025917.1 pol protein [Cucumis melo var. makuwa]

3.4e-34

84.09

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Query:  MLGPDLVQATNEAIRRIRARMLTVQSRQKSYADARRKDLEFDIGDMVFLKVAPMKGVLRFEKRGKLSPRFVGPFEVLARVGPMAYRLA
        MLGP+LVQ TN AI++IRARMLT QSRQKSYAD RRKDLEF++GDMVFLKVAPMKGVLRFEK+GKLSPRFVGPFE+L R+GP+AYRLA
Subjt:  MLGPDLVQATNEAIRRIRARMLTVQSRQKSYADARRKDLEFDIGDMVFLKVAPMKGVLRFEKRGKLSPRFVGPFEVLARVGPMAYRLA

KAA0066468.1 pol protein [Cucumis melo var. makuwa]

1.3e-33

84.09

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Query:  MLGPDLVQATNEAIRRIRARMLTVQSRQKSYADARRKDLEFDIGDMVFLKVAPMKGVLRFEKRGKLSPRFVGPFEVLARVGPMAYRLA
        MLGP+LVQ TN AI++IRARMLT QSRQKSYAD RRKDLEF++GDMVFLKVAPMKGVLRF K+GKLSPRFVGPFEVL R+GP+AYRLA
Subjt:  MLGPDLVQATNEAIRRIRARMLTVQSRQKSYADARRKDLEFDIGDMVFLKVAPMKGVLRFEKRGKLSPRFVGPFEVLARVGPMAYRLA

TYK04282.1 pol protein [Cucumis melo var. makuwa]

5.7e-34

84.09

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Query:  MLGPDLVQATNEAIRRIRARMLTVQSRQKSYADARRKDLEFDIGDMVFLKVAPMKGVLRFEKRGKLSPRFVGPFEVLARVGPMAYRLA
        MLGP+LVQ TN AI++IRARMLT QSRQKSYAD RRKDLEF++GDMVFLKVAPMKGVLRFEK+GKLSPRFVGPFE+L R+GP+AYRLA
Subjt:  MLGPDLVQATNEAIRRIRARMLTVQSRQKSYADARRKDLEFDIGDMVFLKVAPMKGVLRFEKRGKLSPRFVGPFEVLARVGPMAYRLA

TYK08867.1 pol protein [Cucumis melo var. makuwa]

4.4e-34

82.95

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Query:  MLGPDLVQATNEAIRRIRARMLTVQSRQKSYADARRKDLEFDIGDMVFLKVAPMKGVLRFEKRGKLSPRFVGPFEVLARVGPMAYRLA
        MLGP+LVQ TN AI++IRARMLT QSRQKSYAD RRKDLEF++GDMVFLKVAPMKGVLRFEK+GKLSPRF+GPFE+L R+GP+AYRLA
Subjt:  MLGPDLVQATNEAIRRIRARMLTVQSRQKSYADARRKDLEFDIGDMVFLKVAPMKGVLRFEKRGKLSPRFVGPFEVLARVGPMAYRLA

TYK29789.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]

7.5e-34

84.09

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Query:  MLGPDLVQATNEAIRRIRARMLTVQSRQKSYADARRKDLEFDIGDMVFLKVAPMKGVLRFEKRGKLSPRFVGPFEVLARVGPMAYRLA
        MLGP+LVQ TN AI++IRARMLT QSRQKSYAD RRKDLEFD+GDMVFLKVAPMKG LRFEK+GKLSPRFVGPFE+L R+GP+AYRLA
Subjt:  MLGPDLVQATNEAIRRIRARMLTVQSRQKSYADARRKDLEFDIGDMVFLKVAPMKGVLRFEKRGKLSPRFVGPFEVLARVGPMAYRLA

TrEMBL top hits

e value

%identity

Alignment

A0A5A7TP01 Reverse transcriptase

1.6e-34

84.09

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Query:  MLGPDLVQATNEAIRRIRARMLTVQSRQKSYADARRKDLEFDIGDMVFLKVAPMKGVLRFEKRGKLSPRFVGPFEVLARVGPMAYRLA
        MLGP+LVQ TN AI++IRARMLT QSRQKSYAD RRKDLEF++GDMVFLKVAPMKGVLRFEK+GKLSPRFVGPFE+L R+GP+AYRLA
Subjt:  MLGPDLVQATNEAIRRIRARMLTVQSRQKSYADARRKDLEFDIGDMVFLKVAPMKGVLRFEKRGKLSPRFVGPFEVLARVGPMAYRLA

A0A5A7VFG3 Pol protein

6.2e-34

84.09

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Query:  MLGPDLVQATNEAIRRIRARMLTVQSRQKSYADARRKDLEFDIGDMVFLKVAPMKGVLRFEKRGKLSPRFVGPFEVLARVGPMAYRLA
        MLGP+LVQ TN AI++IRARMLT QSRQKSYAD RRKDLEF++GDMVFLKVAPMKGVLRF K+GKLSPRFVGPFEVL R+GP+AYRLA
Subjt:  MLGPDLVQATNEAIRRIRARMLTVQSRQKSYADARRKDLEFDIGDMVFLKVAPMKGVLRFEKRGKLSPRFVGPFEVLARVGPMAYRLA

A0A5D3BZG7 Pol protein

2.8e-34

84.09

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Query:  MLGPDLVQATNEAIRRIRARMLTVQSRQKSYADARRKDLEFDIGDMVFLKVAPMKGVLRFEKRGKLSPRFVGPFEVLARVGPMAYRLA
        MLGP+LVQ TN AI++IRARMLT QSRQKSYAD RRKDLEF++GDMVFLKVAPMKGVLRFEK+GKLSPRFVGPFE+L R+GP+AYRLA
Subjt:  MLGPDLVQATNEAIRRIRARMLTVQSRQKSYADARRKDLEFDIGDMVFLKVAPMKGVLRFEKRGKLSPRFVGPFEVLARVGPMAYRLA

A0A5D3CA36 Pol protein

2.1e-34

82.95

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Query:  MLGPDLVQATNEAIRRIRARMLTVQSRQKSYADARRKDLEFDIGDMVFLKVAPMKGVLRFEKRGKLSPRFVGPFEVLARVGPMAYRLA
        MLGP+LVQ TN AI++IRARMLT QSRQKSYAD RRKDLEF++GDMVFLKVAPMKGVLRFEK+GKLSPRF+GPFE+L R+GP+AYRLA
Subjt:  MLGPDLVQATNEAIRRIRARMLTVQSRQKSYADARRKDLEFDIGDMVFLKVAPMKGVLRFEKRGKLSPRFVGPFEVLARVGPMAYRLA

A0A5D3E202 Ty3-gypsy retrotransposon protein

3.6e-34

84.09

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Query:  MLGPDLVQATNEAIRRIRARMLTVQSRQKSYADARRKDLEFDIGDMVFLKVAPMKGVLRFEKRGKLSPRFVGPFEVLARVGPMAYRLA
        MLGP+LVQ TN AI++IRARMLT QSRQKSYAD RRKDLEFD+GDMVFLKVAPMKG LRFEK+GKLSPRFVGPFE+L R+GP+AYRLA
Subjt:  MLGPDLVQATNEAIRRIRARMLTVQSRQKSYADARRKDLEFDIGDMVFLKVAPMKGVLRFEKRGKLSPRFVGPFEVLARVGPMAYRLA

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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ATGTTGGGACCCGATTTAGTCCAAGCTACCAATGAAGCCATACGAAGGATTAGGGCTCGCATGTTGACAGTCCAGAGCAGGCAGAAGAGTTACGCTGATGCAAGGCGTAA
GGACCTTGAGTTCGACATAGGAGACATGGTGTTTCTGAAAGTGGCACCTATGAAAGGTGTCTTGAGGTTTGAAAAGAGGGGAAAGTTGAGCCCCCGCTTTGTGGGACCAT
TCGAGGTACTAGCACGGGTTGGGCCAATGGCGTACCGGTTGGCGTAG

mRNA sequence

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Protein sequence

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MLGPDLVQATNEAIRRIRARMLTVQSRQKSYADARRKDLEFDIGDMVFLKVAPMKGVLRFEKRGKLSPRFVGPFEVLARVGPMAYRLA

PI0016439 (gene) of Melon (PI 482460) v1 genome