CuGenDBv2

Gene ID	PI0016448
Organism	Cucumis metuliferus PI 482460 (Melon (PI 482460) v1)
Description	Gag/pol protein
Genome location	chr04:23158494..23162141
RNA-Seq Expression	PI0016448
Synteny	PI0016448
Gene Ontology terms	GO:0015074 - DNA integration (biological process) GO:0003676 - nucleic acid binding (molecular function) GO:0008270 - zinc ion binding (molecular function)
InterPro domains	NA

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0035879.1 gag/pol protein [Cucumis melo var. makuwa]

3.5e-79

62.5

Show/hide

Query:  MSSSIIALLKNEKLTGDNYATWKSNLNMILVIDNLRFVLMEECPPSPVRNASRTVRDAHDRWTKANEKARVYILASMSNVLSKKHESMVSARQIMDSLQE
        M+S+ + +L  +KL G+NYA+WK+ +N +L+ID+LRFVL+EECP  P  NA+RTVR+ ++RW KANEKAR YILAS+S VL+KKHESM++AR+IMDSLQE
Subjt:  MSSSIIALLKNEKLTGDNYATWKSNLNMILVIDNLRFVLMEECPPSPVRNASRTVRDAHDRWTKANEKARVYILASMSNVLSKKHESMVSARQIMDSLQE

Query:  IFGQPSIQIRHEAIKYVHNARMKEGQSVREHVLDMMVQFNVAETNGVVIDEQSQVSFILESLPKSFLQFRSNAVMNKIEYTMTILLNELQTFQSLMKNKG
        +FGQ S QI+H+A+KY++NARM EG SVREHVL+MMV FNVAE NG VIDE SQVSFILESLP+SFLQFRSNAVMNKI YT+T LLNELQTF+SLMK KG
Subjt:  IFGQPSIQIRHEAIKYVHNARMKEGQSVREHVLDMMVQFNVAETNGVVIDEQSQVSFILESLPKSFLQFRSNAVMNKIEYTMTILLNELQTFQSLMKNKG

Query:  RKEGEANVAHS-KRFQKGSSSGIKSSGTKISSEQRMSGEEPYAKKLQARKYANNQAIVNTAMRT
        +K GEANVA S ++F +GS+SG KS  +        SG + + KK   +    N A   T  +T
Subjt:  RKEGEANVAHS-KRFQKGSSSGIKSSGTKISSEQRMSGEEPYAKKLQARKYANNQAIVNTAMRT

KAA0044955.1 gag/pol protein [Cucumis melo var. makuwa]

1.3e-78

62.36

Show/hide

Query:  MSSSIIALLKNEKLTGDNYATWKSNLNMILVIDNLRFVLMEECPPSPVRNASRTVRDAHDRWTKANEKARVYILASMSNVLSKKHESMVSARQIMDSLQE
        M+S+ + +L  +KL G+NYA+WK+ +N +L+ID+LRFVL+EECP  P  NA+RTVR+ ++RW KANEKAR YILAS+S VL+KKHESM++AR+IMDSLQE
Subjt:  MSSSIIALLKNEKLTGDNYATWKSNLNMILVIDNLRFVLMEECPPSPVRNASRTVRDAHDRWTKANEKARVYILASMSNVLSKKHESMVSARQIMDSLQE

Query:  IFGQPSIQIRHEAIKYVHNARMKEGQSVREHVLDMMVQFNVAETNGVVIDEQSQVSFILESLPKSFLQFRSNAVMNKIEYTMTILLNELQTFQSLMKNKG
        +FGQ S QI+H+A+KY++NARM EG SVREHVL+MMV FNVAE NG VIDE SQVSFILESLP+SFLQFRSNAVMNKI YT+T LLNELQTF+SLMK KG
Subjt:  IFGQPSIQIRHEAIKYVHNARMKEGQSVREHVLDMMVQFNVAETNGVVIDEQSQVSFILESLPKSFLQFRSNAVMNKIEYTMTILLNELQTFQSLMKNKG

Query:  RKEGEANVAHS-KRFQKGSSSGIKSSGTKISSEQRMSGEEPYAKKLQARKYANNQAIVNTAMR
        +K GEANVA S ++F +GS+SG KS  +        SG + + KK   +    N A   T  +
Subjt:  RKEGEANVAHS-KRFQKGSSSGIKSSGTKISSEQRMSGEEPYAKKLQARKYANNQAIVNTAMR

KAA0051952.1 gag/pol protein [Cucumis melo var. makuwa]

1.3e-78

62.36

Show/hide

Query:  MSSSIIALLKNEKLTGDNYATWKSNLNMILVIDNLRFVLMEECPPSPVRNASRTVRDAHDRWTKANEKARVYILASMSNVLSKKHESMVSARQIMDSLQE
        M+S+ + +L  +KL G+NYA+WK+ +N +L+ID+LRFVL+EECP  P  NA+RTVR+ ++RW KANEKAR YILAS+S VL+KKHESM++AR+IMDSLQE
Subjt:  MSSSIIALLKNEKLTGDNYATWKSNLNMILVIDNLRFVLMEECPPSPVRNASRTVRDAHDRWTKANEKARVYILASMSNVLSKKHESMVSARQIMDSLQE

Query:  IFGQPSIQIRHEAIKYVHNARMKEGQSVREHVLDMMVQFNVAETNGVVIDEQSQVSFILESLPKSFLQFRSNAVMNKIEYTMTILLNELQTFQSLMKNKG
        +FGQ S QI+H+A+KY++NARM EG SVREHVL+MMV FNVAE NG VIDE SQVSFILESLP+SFLQFRSNAVMNKI YT+T LLNELQTF+SLMK KG
Subjt:  IFGQPSIQIRHEAIKYVHNARMKEGQSVREHVLDMMVQFNVAETNGVVIDEQSQVSFILESLPKSFLQFRSNAVMNKIEYTMTILLNELQTFQSLMKNKG

Query:  RKEGEANVAHS-KRFQKGSSSGIKSSGTKISSEQRMSGEEPYAKKLQARKYANNQAIVNTAMR
        +K GEANVA S ++F +GS+SG KS  +        SG + + KK   +    N A   T  +
Subjt:  RKEGEANVAHS-KRFQKGSSSGIKSSGTKISSEQRMSGEEPYAKKLQARKYANNQAIVNTAMR

KAA0054490.1 gag/pol protein [Cucumis melo var. makuwa]

1.3e-78

62.36

Show/hide

Query:  MSSSIIALLKNEKLTGDNYATWKSNLNMILVIDNLRFVLMEECPPSPVRNASRTVRDAHDRWTKANEKARVYILASMSNVLSKKHESMVSARQIMDSLQE
        M+S+ + +L  +KL G+NYA+WK+ +N +L+ID+LRFVL+EECP  P  NA+RTVR+ ++RW KANEKAR YILAS+S VL+KKHESM++AR+IMDSLQE
Subjt:  MSSSIIALLKNEKLTGDNYATWKSNLNMILVIDNLRFVLMEECPPSPVRNASRTVRDAHDRWTKANEKARVYILASMSNVLSKKHESMVSARQIMDSLQE

Query:  IFGQPSIQIRHEAIKYVHNARMKEGQSVREHVLDMMVQFNVAETNGVVIDEQSQVSFILESLPKSFLQFRSNAVMNKIEYTMTILLNELQTFQSLMKNKG
        +FGQ S QI+H+A+KY++NARM EG SVREHVL+MMV FNVAE NG VIDE SQVSFILESLP+SFLQFRSNAVMNKI YT+T LLNELQTF+SLMK KG
Subjt:  IFGQPSIQIRHEAIKYVHNARMKEGQSVREHVLDMMVQFNVAETNGVVIDEQSQVSFILESLPKSFLQFRSNAVMNKIEYTMTILLNELQTFQSLMKNKG

Query:  RKEGEANVAHS-KRFQKGSSSGIKSSGTKISSEQRMSGEEPYAKKLQARKYANNQAIVNTAMR
        +K GEANVA S ++F +GS+SG KS  +        SG + + KK   +    N A   T  +
Subjt:  RKEGEANVAHS-KRFQKGSSSGIKSSGTKISSEQRMSGEEPYAKKLQARKYANNQAIVNTAMR

TYK14550.1 gag/pol protein [Cucumis melo var. makuwa]

3.5e-79

62.5

Show/hide

Query:  MSSSIIALLKNEKLTGDNYATWKSNLNMILVIDNLRFVLMEECPPSPVRNASRTVRDAHDRWTKANEKARVYILASMSNVLSKKHESMVSARQIMDSLQE
        M+S+ + +L  +KL G+NYA+WK+ +N +L+ID+LRFVL+EECP  P  NA+RTVR+ ++RW KANEKAR YILAS+S VL+KKHESM++AR+IMDSLQE
Subjt:  MSSSIIALLKNEKLTGDNYATWKSNLNMILVIDNLRFVLMEECPPSPVRNASRTVRDAHDRWTKANEKARVYILASMSNVLSKKHESMVSARQIMDSLQE

Query:  IFGQPSIQIRHEAIKYVHNARMKEGQSVREHVLDMMVQFNVAETNGVVIDEQSQVSFILESLPKSFLQFRSNAVMNKIEYTMTILLNELQTFQSLMKNKG
        +FGQ S QI+H+A+KY++NARM EG SVREHVL+MMV FNVAE NG VIDE SQVSFILESLP+SFLQFRSNAVMNKI YT+T LLNELQTF+SLMK KG
Subjt:  IFGQPSIQIRHEAIKYVHNARMKEGQSVREHVLDMMVQFNVAETNGVVIDEQSQVSFILESLPKSFLQFRSNAVMNKIEYTMTILLNELQTFQSLMKNKG

Query:  RKEGEANVAHS-KRFQKGSSSGIKSSGTKISSEQRMSGEEPYAKKLQARKYANNQAIVNTAMRT
        +K GEANVA S ++F +GS+SG KS  +        SG + + KK   +    N A   T  +T
Subjt:  RKEGEANVAHS-KRFQKGSSSGIKSSGTKISSEQRMSGEEPYAKKLQARKYANNQAIVNTAMRT

TrEMBL top hits

e value

%identity

Alignment

A0A5A7SMH8 Gag/pol protein

6.5e-79

62.36

Show/hide

Query:  MSSSIIALLKNEKLTGDNYATWKSNLNMILVIDNLRFVLMEECPPSPVRNASRTVRDAHDRWTKANEKARVYILASMSNVLSKKHESMVSARQIMDSLQE
        M+S+ + +L  +KL G+NYA+WK+ +N +L+ID+LRFVL+EECP  P  NA+RTVR+ ++RW KANEKAR YILAS+S VL+KKHESM++AR+IMDSLQE
Subjt:  MSSSIIALLKNEKLTGDNYATWKSNLNMILVIDNLRFVLMEECPPSPVRNASRTVRDAHDRWTKANEKARVYILASMSNVLSKKHESMVSARQIMDSLQE

Query:  IFGQPSIQIRHEAIKYVHNARMKEGQSVREHVLDMMVQFNVAETNGVVIDEQSQVSFILESLPKSFLQFRSNAVMNKIEYTMTILLNELQTFQSLMKNKG
        +FGQ S QI+H+A+KY++NARM EG SVREHVL+MMV FNVAE NG VIDE SQVSFILESLP+SFLQFRSNAVMNKI YT+T LLNELQTF+SLMK KG
Subjt:  IFGQPSIQIRHEAIKYVHNARMKEGQSVREHVLDMMVQFNVAETNGVVIDEQSQVSFILESLPKSFLQFRSNAVMNKIEYTMTILLNELQTFQSLMKNKG

Query:  RKEGEANVAHS-KRFQKGSSSGIKSSGTKISSEQRMSGEEPYAKKLQARKYANNQAIVNTAMR
        +K GEANVA S ++F +GS+SG KS  +        SG + + KK   +    N A   T  +
Subjt:  RKEGEANVAHS-KRFQKGSSSGIKSSGTKISSEQRMSGEEPYAKKLQARKYANNQAIVNTAMR

A0A5A7TU93 Gag/pol protein

6.5e-79

62.36

Show/hide

Query:  MSSSIIALLKNEKLTGDNYATWKSNLNMILVIDNLRFVLMEECPPSPVRNASRTVRDAHDRWTKANEKARVYILASMSNVLSKKHESMVSARQIMDSLQE
        M+S+ + +L  +KL G+NYA+WK+ +N +L+ID+LRFVL+EECP  P  NA+RTVR+ ++RW KANEKAR YILAS+S VL+KKHESM++AR+IMDSLQE
Subjt:  MSSSIIALLKNEKLTGDNYATWKSNLNMILVIDNLRFVLMEECPPSPVRNASRTVRDAHDRWTKANEKARVYILASMSNVLSKKHESMVSARQIMDSLQE

Query:  IFGQPSIQIRHEAIKYVHNARMKEGQSVREHVLDMMVQFNVAETNGVVIDEQSQVSFILESLPKSFLQFRSNAVMNKIEYTMTILLNELQTFQSLMKNKG
        +FGQ S QI+H+A+KY++NARM EG SVREHVL+MMV FNVAE NG VIDE SQVSFILESLP+SFLQFRSNAVMNKI YT+T LLNELQTF+SLMK KG
Subjt:  IFGQPSIQIRHEAIKYVHNARMKEGQSVREHVLDMMVQFNVAETNGVVIDEQSQVSFILESLPKSFLQFRSNAVMNKIEYTMTILLNELQTFQSLMKNKG

Query:  RKEGEANVAHS-KRFQKGSSSGIKSSGTKISSEQRMSGEEPYAKKLQARKYANNQAIVNTAMR
        +K GEANVA S ++F +GS+SG KS  +        SG + + KK   +    N A   T  +
Subjt:  RKEGEANVAHS-KRFQKGSSSGIKSSGTKISSEQRMSGEEPYAKKLQARKYANNQAIVNTAMR

A0A5A7TWB9 Gag/pol protein

6.5e-79

62.36

Show/hide

Query:  MSSSIIALLKNEKLTGDNYATWKSNLNMILVIDNLRFVLMEECPPSPVRNASRTVRDAHDRWTKANEKARVYILASMSNVLSKKHESMVSARQIMDSLQE
        M+S+ + +L  +KL G+NYA+WK+ +N +L+ID+LRFVL+EECP  P  NA+RTVR+ ++RW KANEKAR YILAS+S VL+KKHESM++AR+IMDSLQE
Subjt:  MSSSIIALLKNEKLTGDNYATWKSNLNMILVIDNLRFVLMEECPPSPVRNASRTVRDAHDRWTKANEKARVYILASMSNVLSKKHESMVSARQIMDSLQE

Query:  IFGQPSIQIRHEAIKYVHNARMKEGQSVREHVLDMMVQFNVAETNGVVIDEQSQVSFILESLPKSFLQFRSNAVMNKIEYTMTILLNELQTFQSLMKNKG
        +FGQ S QI+H+A+KY++NARM EG SVREHVL+MMV FNVAE NG VIDE SQVSFILESLP+SFLQFRSNAVMNKI YT+T LLNELQTF+SLMK KG
Subjt:  IFGQPSIQIRHEAIKYVHNARMKEGQSVREHVLDMMVQFNVAETNGVVIDEQSQVSFILESLPKSFLQFRSNAVMNKIEYTMTILLNELQTFQSLMKNKG

Query:  RKEGEANVAHS-KRFQKGSSSGIKSSGTKISSEQRMSGEEPYAKKLQARKYANNQAIVNTAMR
        +K GEANVA S ++F +GS+SG KS  +        SG + + KK   +    N A   T  +
Subjt:  RKEGEANVAHS-KRFQKGSSSGIKSSGTKISSEQRMSGEEPYAKKLQARKYANNQAIVNTAMR

A0A5D3CPJ6 Gag/pol protein

1.7e-79

62.5

Show/hide

Query:  MSSSIIALLKNEKLTGDNYATWKSNLNMILVIDNLRFVLMEECPPSPVRNASRTVRDAHDRWTKANEKARVYILASMSNVLSKKHESMVSARQIMDSLQE
        M+S+ + +L  +KL G+NYA+WK+ +N +L+ID+LRFVL+EECP  P  NA+RTVR+ ++RW KANEKAR YILAS+S VL+KKHESM++AR+IMDSLQE
Subjt:  MSSSIIALLKNEKLTGDNYATWKSNLNMILVIDNLRFVLMEECPPSPVRNASRTVRDAHDRWTKANEKARVYILASMSNVLSKKHESMVSARQIMDSLQE

Query:  IFGQPSIQIRHEAIKYVHNARMKEGQSVREHVLDMMVQFNVAETNGVVIDEQSQVSFILESLPKSFLQFRSNAVMNKIEYTMTILLNELQTFQSLMKNKG
        +FGQ S QI+H+A+KY++NARM EG SVREHVL+MMV FNVAE NG VIDE SQVSFILESLP+SFLQFRSNAVMNKI YT+T LLNELQTF+SLMK KG
Subjt:  IFGQPSIQIRHEAIKYVHNARMKEGQSVREHVLDMMVQFNVAETNGVVIDEQSQVSFILESLPKSFLQFRSNAVMNKIEYTMTILLNELQTFQSLMKNKG

Query:  RKEGEANVAHS-KRFQKGSSSGIKSSGTKISSEQRMSGEEPYAKKLQARKYANNQAIVNTAMRT
        +K GEANVA S ++F +GS+SG KS  +        SG + + KK   +    N A   T  +T
Subjt:  RKEGEANVAHS-KRFQKGSSSGIKSSGTKISSEQRMSGEEPYAKKLQARKYANNQAIVNTAMRT

A0A5D3CSZ6 Gag/pol protein

1.7e-79

62.5

Show/hide

Query:  MSSSIIALLKNEKLTGDNYATWKSNLNMILVIDNLRFVLMEECPPSPVRNASRTVRDAHDRWTKANEKARVYILASMSNVLSKKHESMVSARQIMDSLQE
        M+S+ + +L  +KL G+NYA+WK+ +N +L+ID+LRFVL+EECP  P  NA+RTVR+ ++RW KANEKAR YILAS+S VL+KKHESM++AR+IMDSLQE
Subjt:  MSSSIIALLKNEKLTGDNYATWKSNLNMILVIDNLRFVLMEECPPSPVRNASRTVRDAHDRWTKANEKARVYILASMSNVLSKKHESMVSARQIMDSLQE

Query:  IFGQPSIQIRHEAIKYVHNARMKEGQSVREHVLDMMVQFNVAETNGVVIDEQSQVSFILESLPKSFLQFRSNAVMNKIEYTMTILLNELQTFQSLMKNKG
        +FGQ S QI+H+A+KY++NARM EG SVREHVL+MMV FNVAE NG VIDE SQVSFILESLP+SFLQFRSNAVMNKI YT+T LLNELQTF+SLMK KG
Subjt:  IFGQPSIQIRHEAIKYVHNARMKEGQSVREHVLDMMVQFNVAETNGVVIDEQSQVSFILESLPKSFLQFRSNAVMNKIEYTMTILLNELQTFQSLMKNKG

Query:  RKEGEANVAHS-KRFQKGSSSGIKSSGTKISSEQRMSGEEPYAKKLQARKYANNQAIVNTAMRT
        +K GEANVA S ++F +GS+SG KS  +        SG + + KK   +    N A   T  +T
Subjt:  RKEGEANVAHS-KRFQKGSSSGIKSSGTKISSEQRMSGEEPYAKKLQARKYANNQAIVNTAMRT

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

Show/hide CDS sequence

ATGTCTTCCTCAATTATAGCACTGCTTAAAAATGAAAAATTAACCGGTGATAATTATGCGACGTGGAAATCGAACCTGAATATGATTCTTGTAATCGATAATCTACGCTT
CGTCTTAATGGAGGAATGTCCTCCTTCCCCTGTTCGAAATGCATCCCGGACCGTCAGGGATGCACATGACCGCTGGACAAAGGCCAATGAAAAGGCCCGAGTCTACATCT
TGGCCAGTATGTCTAACGTACTGAGCAAGAAACATGAGTCCATGGTCAGTGCACGTCAGATCATGGACTCCCTCCAGGAGATATTTGGACAACCATCCATTCAAATTCGG
CACGAGGCTATTAAATACGTTCATAATGCCCGTATGAAGGAAGGCCAATCTGTTAGAGAACATGTTCTCGACATGATGGTCCAATTCAACGTGGCAGAAACGAACGGTGT
GGTCATTGACGAGCAAAGTCAGGTATCCTTTATCTTAGAATCTCTTCCGAAGAGCTTCCTTCAATTCCGTAGCAATGCGGTTATGAACAAGATAGAGTATACCATGACTA
TCCTCCTTAACGAGTTGCAGACTTTTCAGTCTCTTATGAAAAATAAGGGACGAAAAGAAGGAGAGGCAAATGTTGCCCATTCCAAGAGGTTTCAGAAGGGTTCATCCTCT
GGAATCAAGTCCTCTGGAACCAAGATTTCAAGCGAACAAAGGATGTCAGGTGAGGAACCCTACGCGAAGAAGCTGCAGGCGAGGAAGTATGCGAATAACCAGGCGATCGT
GAATACAGCTATGCGGACCTGA

mRNA sequence

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Protein sequence

Show/hide protein sequence

MSSSIIALLKNEKLTGDNYATWKSNLNMILVIDNLRFVLMEECPPSPVRNASRTVRDAHDRWTKANEKARVYILASMSNVLSKKHESMVSARQIMDSLQEIFGQPSIQIR
HEAIKYVHNARMKEGQSVREHVLDMMVQFNVAETNGVVIDEQSQVSFILESLPKSFLQFRSNAVMNKIEYTMTILLNELQTFQSLMKNKGRKEGEANVAHSKRFQKGSSS
GIKSSGTKISSEQRMSGEEPYAKKLQARKYANNQAIVNTAMRT

PI0016448 (gene) of Melon (PI 482460) v1 genome