CuGenDBv2

Gene ID	PI0016467
Organism	Cucumis metuliferus PI 482460 (Melon (PI 482460) v1)
Description	50S ribosomal protein L23, chloroplastic
Genome location	chr02:10380543..10380823
RNA-Seq Expression	PI0016467
Synteny	PI0016467
Gene Ontology terms	GO:0000027 - ribosomal large subunit assembly (biological process) GO:0006412 - translation (biological process) GO:0009507 - chloroplast (cellular component) GO:0022625 - cytosolic large ribosomal subunit (cellular component) GO:0003729 - mRNA binding (molecular function) GO:0003735 - structural constituent of ribosome (molecular function) GO:0019843 - rRNA binding (molecular function)
InterPro domains	IPR001014 - Ribosomal protein L23/L25, conserved site IPR012677 - Nucleotide-binding alpha-beta plait domain superfamily IPR012678 - Ribosomal protein L23/L15e core domain superfamily IPR013025 - Ribosomal protein L25/L23

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

CBI37833.3 unnamed protein product, partial [Vitis vinifera]

9.9e-33

81.72

Show/hide

Query:  MDGIKYAVFTDKSIRLLKKNQYTSNAESRSTRTEIKHWVELFFGV------------KGRRMGHIMGHTMHYRRMIITLQPDYSIPPLRKKRT
        MDGIKYAVFTDKSIRLL+KNQYTSN ESRSTRTEIKHWVELFFGV            KGRRMG IMGHTMHYRRMIITLQP YSIPPLRKK+T
Subjt:  MDGIKYAVFTDKSIRLLKKNQYTSNAESRSTRTEIKHWVELFFGV------------KGRRMGHIMGHTMHYRRMIITLQPDYSIPPLRKKRT

QKV45901.1 ribosomal protein L23 [Saniculiphyllum guangxiense]

2.2e-32

81.72

Show/hide

Query:  MDGIKYAVFTDKSIRLLKKNQYTSNAESRSTRTEIKHWVELFFGV------------KGRRMGHIMGHTMHYRRMIITLQPDYSIPPLRKKRT
        MDGIKYAVFTDKSIRLL+KNQYTSN ES STRTEIKHWVELFFGV            KGRRMG IMGHTMHYRRMIITLQP YSIPPLRKKRT
Subjt:  MDGIKYAVFTDKSIRLLKKNQYTSNAESRSTRTEIKHWVELFFGV------------KGRRMGHIMGHTMHYRRMIITLQPDYSIPPLRKKRT

YP_009434546.1 ribosomal protein L23 [Bergenia scopulosa]

2.9e-32

81.72

Show/hide

Query:  MDGIKYAVFTDKSIRLLKKNQYTSNAESRSTRTEIKHWVELFFGV------------KGRRMGHIMGHTMHYRRMIITLQPDYSIPPLRKKRT
        MDGIKYAVFTDKSIRLL+KNQYTSN ES STRTEIKHWVELFFGV            KGRRMG IMGHTMHYRRMIITLQP YSIPPLRKKRT
Subjt:  MDGIKYAVFTDKSIRLLKKNQYTSNAESRSTRTEIKHWVELFFGV------------KGRRMGHIMGHTMHYRRMIITLQPDYSIPPLRKKRT

YP_009581739.1 ribosomal protein L23 [Helleborus thibetanus]

2.2e-32

81.72

Show/hide

Query:  MDGIKYAVFTDKSIRLLKKNQYTSNAESRSTRTEIKHWVELFFGV------------KGRRMGHIMGHTMHYRRMIITLQPDYSIPPLRKKRT
        MDGIKYAVFTDKSIRLL  NQYTSN ES STRTEIKHWVELFFGV            KGRRMGHIMGHTMHYRRMIITLQP YSIPPLRKKRT
Subjt:  MDGIKYAVFTDKSIRLLKKNQYTSNAESRSTRTEIKHWVELFFGV------------KGRRMGHIMGHTMHYRRMIITLQPDYSIPPLRKKRT

YP_009669946.1 ribosomal protein L23 [Salvertia convallariodora]

2.9e-32

81.72

Show/hide

Query:  MDGIKYAVFTDKSIRLLKKNQYTSNAESRSTRTEIKHWVELFFGV------------KGRRMGHIMGHTMHYRRMIITLQPDYSIPPLRKKRT
        MDGIKYAVFTDKSIRLL KNQYTSN ESRSTRTEIKHWVELFFGV            KGRRMG I+GHTMHYRRMIITLQP YSIPPLRKKRT
Subjt:  MDGIKYAVFTDKSIRLLKKNQYTSNAESRSTRTEIKHWVELFFGV------------KGRRMGHIMGHTMHYRRMIITLQPDYSIPPLRKKRT

TrEMBL top hits

e value

%identity

Alignment

A0A2S1P5F6 50S ribosomal protein L23, chloroplastic

1.4e-32

81.72

Show/hide

Query:  MDGIKYAVFTDKSIRLLKKNQYTSNAESRSTRTEIKHWVELFFGV------------KGRRMGHIMGHTMHYRRMIITLQPDYSIPPLRKKRT
        MDGIKYAVFTDKSIRLL+KNQYTSN ES STRTEIKHWVELFFGV            KGRRMG IMGHTMHYRRMIITLQP YSIPPLRKKRT
Subjt:  MDGIKYAVFTDKSIRLLKKNQYTSNAESRSTRTEIKHWVELFFGV------------KGRRMGHIMGHTMHYRRMIITLQPDYSIPPLRKKRT

A0A481Y4D1 50S ribosomal protein L23, chloroplastic

1.1e-32

81.72

Show/hide

Query:  MDGIKYAVFTDKSIRLLKKNQYTSNAESRSTRTEIKHWVELFFGV------------KGRRMGHIMGHTMHYRRMIITLQPDYSIPPLRKKRT
        MDGIKYAVFTDKSIRLL  NQYTSN ES STRTEIKHWVELFFGV            KGRRMGHIMGHTMHYRRMIITLQP YSIPPLRKKRT
Subjt:  MDGIKYAVFTDKSIRLLKKNQYTSNAESRSTRTEIKHWVELFFGV------------KGRRMGHIMGHTMHYRRMIITLQPDYSIPPLRKKRT

A0A4P9HQC1 50S ribosomal protein L23, chloroplastic

1.4e-32

81.72

Show/hide

Query:  MDGIKYAVFTDKSIRLLKKNQYTSNAESRSTRTEIKHWVELFFGV------------KGRRMGHIMGHTMHYRRMIITLQPDYSIPPLRKKRT
        MDGIKYAVFTDKSIRLL+KNQYTSN ES STRTEIKHWVELFFGV            KGRRMG IMGHTMHYRRMIITLQP YSIPPLRKKRT
Subjt:  MDGIKYAVFTDKSIRLLKKNQYTSNAESRSTRTEIKHWVELFFGV------------KGRRMGHIMGHTMHYRRMIITLQPDYSIPPLRKKRT

A0A4Y5PUD6 50S ribosomal protein L23, chloroplastic

1.4e-32

81.72

Show/hide

Query:  MDGIKYAVFTDKSIRLLKKNQYTSNAESRSTRTEIKHWVELFFGV------------KGRRMGHIMGHTMHYRRMIITLQPDYSIPPLRKKRT
        MDGIKYAVFTDKSIRLL KNQYTSN ESRSTRTEIKHWVELFFGV            KGRRMG I+GHTMHYRRMIITLQP YSIPPLRKKRT
Subjt:  MDGIKYAVFTDKSIRLLKKNQYTSNAESRSTRTEIKHWVELFFGV------------KGRRMGHIMGHTMHYRRMIITLQPDYSIPPLRKKRT

D7U514 Uncharacterized protein

4.8e-33

81.72

Show/hide

Query:  MDGIKYAVFTDKSIRLLKKNQYTSNAESRSTRTEIKHWVELFFGV------------KGRRMGHIMGHTMHYRRMIITLQPDYSIPPLRKKRT
        MDGIKYAVFTDKSIRLL+KNQYTSN ESRSTRTEIKHWVELFFGV            KGRRMG IMGHTMHYRRMIITLQP YSIPPLRKK+T
Subjt:  MDGIKYAVFTDKSIRLLKKNQYTSNAESRSTRTEIKHWVELFFGV------------KGRRMGHIMGHTMHYRRMIITLQPDYSIPPLRKKRT

SwissProt top hits

e value

%identity

Alignment

Q06R67 50S ribosomal protein L23, chloroplastic

3.2e-34

80.65

Show/hide

Query:  MDGIKYAVFTDKSIRLLKKNQYTSNAESRSTRTEIKHWVELFFGV------------KGRRMGHIMGHTMHYRRMIITLQPDYSIPPLRKKRT
        MDGIKYAVFT+KSIRLL KNQYTSN ES STRTEIKHWVELFFGV            KGRRMG IMGHTMHYRRMIITLQP YSIPPLRKKRT
Subjt:  MDGIKYAVFTDKSIRLLKKNQYTSNAESRSTRTEIKHWVELFFGV------------KGRRMGHIMGHTMHYRRMIITLQPDYSIPPLRKKRT

Q09FP7 50S ribosomal protein L23, chloroplastic

4.2e-34

80.65

Show/hide

Query:  MDGIKYAVFTDKSIRLLKKNQYTSNAESRSTRTEIKHWVELFFGV------------KGRRMGHIMGHTMHYRRMIITLQPDYSIPPLRKKRT
        MDGIKYAVFTDKSIRLL  NQYTSN ES STRTEIKHWVELFFGV            KGRRMG IMGHTMHYRRMIITLQP YSIPPLRKKRT
Subjt:  MDGIKYAVFTDKSIRLLKKNQYTSNAESRSTRTEIKHWVELFFGV------------KGRRMGHIMGHTMHYRRMIITLQPDYSIPPLRKKRT

Q0PUX7 50S ribosomal protein L23, chloroplastic

4.2e-34

80.65

Show/hide

Query:  MDGIKYAVFTDKSIRLLKKNQYTSNAESRSTRTEIKHWVELFFGV------------KGRRMGHIMGHTMHYRRMIITLQPDYSIPPLRKKRT
        MDGIKYAVFTDKSIRLL KNQYTSN ES STRTEIKHWVELFFGV            KGRRMG  MGHTMHYRRMIITLQP YSIPPLRKKRT
Subjt:  MDGIKYAVFTDKSIRLLKKNQYTSNAESRSTRTEIKHWVELFFGV------------KGRRMGHIMGHTMHYRRMIITLQPDYSIPPLRKKRT

Q0ZIV5 50S ribosomal protein L23, chloroplastic

1.1e-34

81.72

Show/hide

Query:  MDGIKYAVFTDKSIRLLKKNQYTSNAESRSTRTEIKHWVELFFGV------------KGRRMGHIMGHTMHYRRMIITLQPDYSIPPLRKKRT
        MDGIKYAVFTDKSIRLL KNQYTSN ES STRTEIKHWVELFFGV            KGRRMG IMGHTMHYRRMIITLQP YSIPPLRKKRT
Subjt:  MDGIKYAVFTDKSIRLLKKNQYTSNAESRSTRTEIKHWVELFFGV------------KGRRMGHIMGHTMHYRRMIITLQPDYSIPPLRKKRT

Q4VZK6 50S ribosomal protein L23, chloroplastic

1.1e-34

81.72

Show/hide

Query:  MDGIKYAVFTDKSIRLLKKNQYTSNAESRSTRTEIKHWVELFFGV------------KGRRMGHIMGHTMHYRRMIITLQPDYSIPPLRKKRT
        MDGIKYAVFTDKSIRLL KNQYTSN ES STRTEIKHWVELFFGV            KGRRMG IMGHTMHYRRMIITLQP YSIPPLRKKRT
Subjt:  MDGIKYAVFTDKSIRLLKKNQYTSNAESRSTRTEIKHWVELFFGV------------KGRRMGHIMGHTMHYRRMIITLQPDYSIPPLRKKRT

Arabidopsis top hits

e value

%identity

Alignment

ATCG00840.1 ribosomal protein L23.1

2.1e-33

77.42

Show/hide

Query:  MDGIKYAVFTDKSIRLLKKNQYTSNAESRSTRTEIKHWVELFFGV------------KGRRMGHIMGHTMHYRRMIITLQPDYSIPPLRKKRT
        MDGIKYAVFTDKSIRLL KNQYT N ES STRTEIKHWVELFFGV            K +RMG I+GHTMHYRRMIITLQP YSIPPLRKKRT
Subjt:  MDGIKYAVFTDKSIRLLKKNQYTSNAESRSTRTEIKHWVELFFGV------------KGRRMGHIMGHTMHYRRMIITLQPDYSIPPLRKKRT

ATCG01300.1 ribosomal protein L23

2.1e-33

77.42

Show/hide

Query:  MDGIKYAVFTDKSIRLLKKNQYTSNAESRSTRTEIKHWVELFFGV------------KGRRMGHIMGHTMHYRRMIITLQPDYSIPPLRKKRT
        MDGIKYAVFTDKSIRLL KNQYT N ES STRTEIKHWVELFFGV            K +RMG I+GHTMHYRRMIITLQP YSIPPLRKKRT
Subjt:  MDGIKYAVFTDKSIRLLKKNQYTSNAESRSTRTEIKHWVELFFGV------------KGRRMGHIMGHTMHYRRMIITLQPDYSIPPLRKKRT

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGGATGGAATCAAATATGCAGTATTTACAGACAAAAGTATTCGGTTATTGAAGAAAAATCAATATACTTCTAATGCCGAATCAAGATCAACTAGGACAGAAATAAAGCA
TTGGGTCGAACTCTTCTTTGGTGTCAAGGGTAGAAGAATGGGACATATTATGGGACATACAATGCATTACAGACGTATGATCATTACGCTTCAACCGGATTATTCTATTC
CACCTCTTAGAAAGAAAAGAACTTAA

mRNA sequence

Show/hide mRNA sequence

Protein sequence

Show/hide protein sequence

MDGIKYAVFTDKSIRLLKKNQYTSNAESRSTRTEIKHWVELFFGVKGRRMGHIMGHTMHYRRMIITLQPDYSIPPLRKKRT

PI0016467 (gene) of Melon (PI 482460) v1 genome