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PI0016473 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0016473
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionTransposon Ty3-G Gag-Pol polyprotein
Genome locationchr07:20015301..20015927
RNA-Seq ExpressionPI0016473
SyntenyPI0016473
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0016020 - membrane (cellular component)
GO:0003676 - nucleic acid binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0052233.1 Transposon Ty3-G Gag-Pol polyprotein [Cucumis melo var. makuwa]1.7e-0585.29Show/hide
Query:  FLYTETTINKSSDAFVNTLDLSLLLTLGKYLDRP
        FLYTET INK SDAFVN LD SLLLTLGKY+DRP
Subjt:  FLYTETTINKSSDAFVNTLDLSLLLTLGKYLDRP

KGN54534.1 hypothetical protein Csa_012101 [Cucumis sativus]2.9e-4268.24Show/hide
Query:  KKRATIKWIINGINPSIRHEWTSLDAVRSSGGILIMWSAASFSVSSITKGAQSLTVLFTLADGFNFWLIGI---------------STSSDGHRKNPTNI
        +KRATIKWI+N                   GGILIMWSAASF VSSITKGA SLTVLFTLADGF+FWLIG+               ST SDGHRKNPT I
Subjt:  KKRATIKWIINGINPSIRHEWTSLDAVRSSGGILIMWSAASFSVSSITKGAQSLTVLFTLADGFNFWLIGI---------------STSSDGHRKNPTNI

Query:  DLLEKCRHSILLLNKGILLICPFRMAAIHGQISEIHQLIPRSIFLYTE
        DL EKCRHSILLLNKGILLICPFRMAAIHGQISEIHQLIPR I  YT+
Subjt:  DLLEKCRHSILLLNKGILLICPFRMAAIHGQISEIHQLIPRSIFLYTE

TYK01796.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]1.7e-0585.29Show/hide
Query:  FLYTETTINKSSDAFVNTLDLSLLLTLGKYLDRP
        FLYTET INK SDAFVN LD SLLLTLGKY+DRP
Subjt:  FLYTETTINKSSDAFVNTLDLSLLLTLGKYLDRP

XP_022145142.1 uncharacterized protein LOC111014657 [Momordica charantia]4.1e-0434.65Show/hide
Query:  LESLGHGKKRATIKWIINGINP-----------------------SIRHEWTSLDAVRSSGGILIMWSAASFSVSSITKGAQSLTVLFTLADGFNFWLIG
        +  LG   KRATIK  I  + P                       SI   W SLDA  +SGGI+++W   S S   +  G  S++V F LAD F +WL G
Subjt:  LESLGHGKKRATIKWIINGINP-----------------------SIRHEWTSLDAVRSSGGILIMWSAASFSVSSITKGAQSLTVLFTLADGFNFWLIG

Query:  I
        +
Subjt:  I

TrEMBL top hitse value%identityAlignment
A0A0A0L0H8 Uncharacterized protein1.4e-4268.24Show/hide
Query:  KKRATIKWIINGINPSIRHEWTSLDAVRSSGGILIMWSAASFSVSSITKGAQSLTVLFTLADGFNFWLIGI---------------STSSDGHRKNPTNI
        +KRATIKWI+N                   GGILIMWSAASF VSSITKGA SLTVLFTLADGF+FWLIG+               ST SDGHRKNPT I
Subjt:  KKRATIKWIINGINPSIRHEWTSLDAVRSSGGILIMWSAASFSVSSITKGAQSLTVLFTLADGFNFWLIGI---------------STSSDGHRKNPTNI

Query:  DLLEKCRHSILLLNKGILLICPFRMAAIHGQISEIHQLIPRSIFLYTE
        DL EKCRHSILLLNKGILLICPFRMAAIHGQISEIHQLIPR I  YT+
Subjt:  DLLEKCRHSILLLNKGILLICPFRMAAIHGQISEIHQLIPRSIFLYTE

A0A5A7U8I6 Transposon Ty3-G Gag-Pol polyprotein8.1e-0685.29Show/hide
Query:  FLYTETTINKSSDAFVNTLDLSLLLTLGKYLDRP
        FLYTET INK SDAFVN LD SLLLTLGKY+DRP
Subjt:  FLYTETTINKSSDAFVNTLDLSLLLTLGKYLDRP

A0A5D3BU88 Ty3/gypsy retrotransposon protein8.1e-0685.29Show/hide
Query:  FLYTETTINKSSDAFVNTLDLSLLLTLGKYLDRP
        FLYTET INK SDAFVN LD SLLLTLGKY+DRP
Subjt:  FLYTETTINKSSDAFVNTLDLSLLLTLGKYLDRP

A0A6J1CVN2 uncharacterized protein LOC1110146572.0e-0434.65Show/hide
Query:  LESLGHGKKRATIKWIINGINP-----------------------SIRHEWTSLDAVRSSGGILIMWSAASFSVSSITKGAQSLTVLFTLADGFNFWLIG
        +  LG   KRATIK  I  + P                       SI   W SLDA  +SGGI+++W   S S   +  G  S++V F LAD F +WL G
Subjt:  LESLGHGKKRATIKWIINGINP-----------------------SIRHEWTSLDAVRSSGGILIMWSAASFSVSSITKGAQSLTVLFTLADGFNFWLIG

Query:  I
        +
Subjt:  I

A0A6J1E2G6 uncharacterized protein LOC1110254059.8e-0434.41Show/hide
Query:  WIINGINPSIRHEWTSLDAVRSSGGILIMWSAASFSVSSITKGAQSLTVLFTLADGFNFWLIGI---STSSDGHRKNPTNIDLLEKCRHSILL
        W  +GIN      W++LDA   + GILI+W+      + + +G  SLT+ F L+DGF FW+ GI   ST+   +      +DL + C +  +L
Subjt:  WIINGINPSIRHEWTSLDAVRSSGGILIMWSAASFSVSSITKGAQSLTVLFTLADGFNFWLIGI---STSSDGHRKNPTNIDLLEKCRHSILL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTAGAGTCCTTGGGTCATGGGAAAAAAAGGGCGACTATCAAGTGGATTATTAACGGTATCAACCCATCCATTAGGCATGAATGGACTTCTTTGGATGCTGTTAGATC
ATCGGGTGGTATTCTTATCATGTGGAGTGCAGCATCCTTCTCGGTCTCTTCTATAACTAAAGGTGCACAGTCCCTAACTGTCCTTTTCACTTTGGCCGATGGTTTCAATT
TCTGGTTAATAGGTATTTCAACCTCATCAGATGGCCACAGGAAAAATCCAACTAATATAGACCTACTAGAGAAATGTCGGCATTCAATTCTTTTATTGAACAAAGGGATC
TTATTGATTTGCCCCTTTCGAATGGCAGCTATACATGGACAGATTTCAGAAATCCACCAACTCATACCAAGATCGATATTCCTATACACAGAAACCACGATTAACAAATC
CAGTGATGCTTTTGTCAATACGCTTGACTTGTCCCTTCTCTTGACTCTTGGTAAATATCTGGATCGGCCCTAA
mRNA sequenceShow/hide mRNA sequence
ATGTTAGAGTCCTTGGGTCATGGGAAAAAAAGGGCGACTATCAAGTGGATTATTAACGGTATCAACCCATCCATTAGGCATGAATGGACTTCTTTGGATGCTGTTAGATC
ATCGGGTGGTATTCTTATCATGTGGAGTGCAGCATCCTTCTCGGTCTCTTCTATAACTAAAGGTGCACAGTCCCTAACTGTCCTTTTCACTTTGGCCGATGGTTTCAATT
TCTGGTTAATAGGTATTTCAACCTCATCAGATGGCCACAGGAAAAATCCAACTAATATAGACCTACTAGAGAAATGTCGGCATTCAATTCTTTTATTGAACAAAGGGATC
TTATTGATTTGCCCCTTTCGAATGGCAGCTATACATGGACAGATTTCAGAAATCCACCAACTCATACCAAGATCGATATTCCTATACACAGAAACCACGATTAACAAATC
CAGTGATGCTTTTGTCAATACGCTTGACTTGTCCCTTCTCTTGACTCTTGGTAAATATCTGGATCGGCCCTAA
Protein sequenceShow/hide protein sequence
MLESLGHGKKRATIKWIINGINPSIRHEWTSLDAVRSSGGILIMWSAASFSVSSITKGAQSLTVLFTLADGFNFWLIGISTSSDGHRKNPTNIDLLEKCRHSILLLNKGI
LLICPFRMAAIHGQISEIHQLIPRSIFLYTETTINKSSDAFVNTLDLSLLLTLGKYLDRP