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PI0016486 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0016486
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrotransposon gag protein
Genome locationchr08:5517299..5517928
RNA-Seq ExpressionPI0016486
SyntenyPI0016486
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0031967.1 retrotransposon gag protein [Cucumis melo var. makuwa]9.3e-7567.77Show/hide
Query:  MLNMTTLLTSFVQGGSVKVAKCGVCGLVGHPNDKCPDLVEEVNVIRKYDPHSNTYNTGWRDDPNLRWGNDNQRPSQATSSSNNQGTNLEDLVKALATNTI
        MLNMTTLLTSFVQG  +KV KC VCGLVGHPNDKCP+++EE+N+++KYDP+SNTYNTGWRD+P LRWGNDNQ+ +QA ++S+NQ TNL+D++KALATNT+
Subjt:  MLNMTTLLTSFVQGGSVKVAKCGVCGLVGHPNDKCPDLVEEVNVIRKYDPHSNTYNTGWRDDPNLRWGNDNQRPSQATSSSNNQGTNLEDLVKALATNTI

Query:  SFQNEMKQQMSHLTNAISKLEGKGKLPAQPDHANVSAISLRSGKVLETPSS-EENVTFTPILLENKDEKKEEKLETS-SLPSSSKGKSHIVDYSPYVLKA
        SFQ EMKQQM+ LT  ISK++GKGKLPAQP+HANVS ISLRSGK+L+TPS+ E+ VT  P+ L +K+E KEEK+ET+ SL +    KS + D++PY+ + 
Subjt:  SFQNEMKQQMSHLTNAISKLEGKGKLPAQPDHANVSAISLRSGKVLETPSS-EENVTFTPILLENKDEKKEEKLETS-SLPSSSKGKSHIVDYSPYVLKA

Query:  HFPSRLAPKKK
        HFPSRLAPKKK
Subjt:  HFPSRLAPKKK

KAA0047407.1 retrotransposon gag protein [Cucumis melo var. makuwa]9.3e-7568.25Show/hide
Query:  MLNMTTLLTSFVQGGSVKVAKCGVCGLVGHPNDKCPDLVEEVNVIRKYDPHSNTYNTGWRDDPNLRWGNDNQRPSQATSSSNNQGTNLEDLVKALATNTI
        MLNMTTLLTSFVQG  +KV KCGVCGLVGHPNDKCP+++E+VN++RKYDPH NTYN+GWRD+PNLRWGNDNQ+ +QA S+S+NQGTNLED++KALATNT+
Subjt:  MLNMTTLLTSFVQGGSVKVAKCGVCGLVGHPNDKCPDLVEEVNVIRKYDPHSNTYNTGWRDDPNLRWGNDNQRPSQATSSSNNQGTNLEDLVKALATNTI

Query:  SFQNEMKQQMSHLTNAISKLEGKGKLPAQPDHANVSAISLRSGKVLETPSS-EENVTFTPILLENKDEKKEEKLETSSLPSSSKG-KSHIVDYSPYVLKA
        SFQ EMKQQM+ LT AISK++GKGKL AQ ++ANVSA+SLRSGK+L+TP++ E+  T  P+ L  K+E KEEK+ET+  P +SK  K  + D++PY+ K 
Subjt:  SFQNEMKQQMSHLTNAISKLEGKGKLPAQPDHANVSAISLRSGKVLETPSS-EENVTFTPILLENKDEKKEEKLETSSLPSSSKG-KSHIVDYSPYVLKA

Query:  HFPSRLAPKKK
         FPSRLAPKKK
Subjt:  HFPSRLAPKKK

KAA0050529.1 retrotransposon gag protein [Cucumis melo var. makuwa]1.3e-7367.77Show/hide
Query:  MLNMTTLLTSFVQGGSVKVAKCGVCGLVGHPNDKCPDLVEEVNVIRKYDPHSNTYNTGWRDDPNLRWGNDNQRPSQATSSSNNQGTNLEDLVKALATNTI
        M NMTTLLTSFVQG  +KV KCGVC LVGHPNDKCP+++E+VN++RKYDPH NTYN GWRD+PNLRWGNDNQ+ +QA  +S+NQGTNLED++KAL T T+
Subjt:  MLNMTTLLTSFVQGGSVKVAKCGVCGLVGHPNDKCPDLVEEVNVIRKYDPHSNTYNTGWRDDPNLRWGNDNQRPSQATSSSNNQGTNLEDLVKALATNTI

Query:  SFQNEMKQQMSHLTNAISKLEGKGKLPAQPDHANVSAISLRSGKVLETPSS-EENVTFTPILLENKDEKKEEKLETSSLPSSSKG-KSHIVDYSPYVLKA
        SFQ EMKQQM+ LT AISK++ KGKLPAQPDHANVSAISLRSGK+L+T ++ E+ VT  P+   +K+E KEEK+ET+  PS+SK  KS + D++ Y+ K 
Subjt:  SFQNEMKQQMSHLTNAISKLEGKGKLPAQPDHANVSAISLRSGKVLETPSS-EENVTFTPILLENKDEKKEEKLETSSLPSSSKG-KSHIVDYSPYVLKA

Query:  HFPSRLAPKKK
        HFPSRLAPK K
Subjt:  HFPSRLAPKKK

KAA0067359.1 retrotransposon gag protein [Cucumis melo var. makuwa]1.1e-7569.81Show/hide
Query:  MLNM-TTLLTSFVQGGSVKVAKCGVCGLVGHPNDKCPDLVEEVNVIRKYDPHSNTYNTGWRDDPNLRWGNDNQRPSQATSSSNNQGTNLEDLVKALATNT
        MLNM TTLLTSFVQG  +KV KCGVCGLVGH N+KCP+++E+VN++R+YDPHSNTYN+GWRD+PNLRWGNDNQ+ +QA S+S+NQGTNLED++KALATNT
Subjt:  MLNM-TTLLTSFVQGGSVKVAKCGVCGLVGHPNDKCPDLVEEVNVIRKYDPHSNTYNTGWRDDPNLRWGNDNQRPSQATSSSNNQGTNLEDLVKALATNT

Query:  ISFQNEMKQQMSHLTNAISKLEGKGKLPAQPDHANVSAISLRSGKVLETPSS-EENVTFTPILLENKDEKKEEKLETSSLPSSSKG-KSHIVDYSPYVLK
        +SFQ EMKQQM+ LT AISK++GKGKLPAQ DHANVSAISLRSGK+L+TP++ E+ VT  P+ L +K+E KEEK+ET+  PS+SK  KS + D++PY+ K
Subjt:  ISFQNEMKQQMSHLTNAISKLEGKGKLPAQPDHANVSAISLRSGKVLETPSS-EENVTFTPILLENKDEKKEEKLETSSLPSSSKG-KSHIVDYSPYVLK

Query:  AHFPSRLAPKKK
          FPSRL PKKK
Subjt:  AHFPSRLAPKKK

XP_008465649.1 PREDICTED: uncharacterized protein LOC103503291, partial [Cucumis melo]5.5e-7568.25Show/hide
Query:  MLNMTTLLTSFVQGGSVKVAKCGVCGLVGHPNDKCPDLVEEVNVIRKYDPHSNTYNTGWRDDPNLRWGNDNQRPSQATSSSNNQGTNLEDLVKALATNTI
        MLNMTTLLTSFVQG ++KV KCGVCGLVG+PNDKCP ++E+VN++R+YDPH NTYN GWRD+PNLRWGNDNQ+ +QA  +S+NQGTNLED++KALATNT+
Subjt:  MLNMTTLLTSFVQGGSVKVAKCGVCGLVGHPNDKCPDLVEEVNVIRKYDPHSNTYNTGWRDDPNLRWGNDNQRPSQATSSSNNQGTNLEDLVKALATNTI

Query:  SFQNEMKQQMSHLTNAISKLEGKGKLPAQPDHANVSAISLRSGKVLETPSS-EENVTFTPILLENKDEKKEEKLETSSLPSSSKG-KSHIVDYSPYVLKA
        SFQ +MKQQM+ LT  ISK++GKGKLPAQPDH NVSAISLRSGK+L+TP++ E+ VT   + L +K++ KEEK+ET+S  S+SK  KS + D++PY+ K 
Subjt:  SFQNEMKQQMSHLTNAISKLEGKGKLPAQPDHANVSAISLRSGKVLETPSS-EENVTFTPILLENKDEKKEEKLETSSLPSSSKG-KSHIVDYSPYVLKA

Query:  HFPSRLAPKKK
         FPSRLAPKKK
Subjt:  HFPSRLAPKKK

TrEMBL top hitse value%identityAlignment
A0A1S3CQU8 uncharacterized protein LOC1035032912.6e-7568.25Show/hide
Query:  MLNMTTLLTSFVQGGSVKVAKCGVCGLVGHPNDKCPDLVEEVNVIRKYDPHSNTYNTGWRDDPNLRWGNDNQRPSQATSSSNNQGTNLEDLVKALATNTI
        MLNMTTLLTSFVQG ++KV KCGVCGLVG+PNDKCP ++E+VN++R+YDPH NTYN GWRD+PNLRWGNDNQ+ +QA  +S+NQGTNLED++KALATNT+
Subjt:  MLNMTTLLTSFVQGGSVKVAKCGVCGLVGHPNDKCPDLVEEVNVIRKYDPHSNTYNTGWRDDPNLRWGNDNQRPSQATSSSNNQGTNLEDLVKALATNTI

Query:  SFQNEMKQQMSHLTNAISKLEGKGKLPAQPDHANVSAISLRSGKVLETPSS-EENVTFTPILLENKDEKKEEKLETSSLPSSSKG-KSHIVDYSPYVLKA
        SFQ +MKQQM+ LT  ISK++GKGKLPAQPDH NVSAISLRSGK+L+TP++ E+ VT   + L +K++ KEEK+ET+S  S+SK  KS + D++PY+ K 
Subjt:  SFQNEMKQQMSHLTNAISKLEGKGKLPAQPDHANVSAISLRSGKVLETPSS-EENVTFTPILLENKDEKKEEKLETSSLPSSSKG-KSHIVDYSPYVLKA

Query:  HFPSRLAPKKK
         FPSRLAPKKK
Subjt:  HFPSRLAPKKK

A0A5A7SRF5 Retrotransposon gag protein4.5e-7567.77Show/hide
Query:  MLNMTTLLTSFVQGGSVKVAKCGVCGLVGHPNDKCPDLVEEVNVIRKYDPHSNTYNTGWRDDPNLRWGNDNQRPSQATSSSNNQGTNLEDLVKALATNTI
        MLNMTTLLTSFVQG  +KV KC VCGLVGHPNDKCP+++EE+N+++KYDP+SNTYNTGWRD+P LRWGNDNQ+ +QA ++S+NQ TNL+D++KALATNT+
Subjt:  MLNMTTLLTSFVQGGSVKVAKCGVCGLVGHPNDKCPDLVEEVNVIRKYDPHSNTYNTGWRDDPNLRWGNDNQRPSQATSSSNNQGTNLEDLVKALATNTI

Query:  SFQNEMKQQMSHLTNAISKLEGKGKLPAQPDHANVSAISLRSGKVLETPSS-EENVTFTPILLENKDEKKEEKLETS-SLPSSSKGKSHIVDYSPYVLKA
        SFQ EMKQQM+ LT  ISK++GKGKLPAQP+HANVS ISLRSGK+L+TPS+ E+ VT  P+ L +K+E KEEK+ET+ SL +    KS + D++PY+ + 
Subjt:  SFQNEMKQQMSHLTNAISKLEGKGKLPAQPDHANVSAISLRSGKVLETPSS-EENVTFTPILLENKDEKKEEKLETS-SLPSSSKGKSHIVDYSPYVLKA

Query:  HFPSRLAPKKK
        HFPSRLAPKKK
Subjt:  HFPSRLAPKKK

A0A5A7UAL2 Retrotransposon gag protein6.5e-7467.77Show/hide
Query:  MLNMTTLLTSFVQGGSVKVAKCGVCGLVGHPNDKCPDLVEEVNVIRKYDPHSNTYNTGWRDDPNLRWGNDNQRPSQATSSSNNQGTNLEDLVKALATNTI
        M NMTTLLTSFVQG  +KV KCGVC LVGHPNDKCP+++E+VN++RKYDPH NTYN GWRD+PNLRWGNDNQ+ +QA  +S+NQGTNLED++KAL T T+
Subjt:  MLNMTTLLTSFVQGGSVKVAKCGVCGLVGHPNDKCPDLVEEVNVIRKYDPHSNTYNTGWRDDPNLRWGNDNQRPSQATSSSNNQGTNLEDLVKALATNTI

Query:  SFQNEMKQQMSHLTNAISKLEGKGKLPAQPDHANVSAISLRSGKVLETPSS-EENVTFTPILLENKDEKKEEKLETSSLPSSSKG-KSHIVDYSPYVLKA
        SFQ EMKQQM+ LT AISK++ KGKLPAQPDHANVSAISLRSGK+L+T ++ E+ VT  P+   +K+E KEEK+ET+  PS+SK  KS + D++ Y+ K 
Subjt:  SFQNEMKQQMSHLTNAISKLEGKGKLPAQPDHANVSAISLRSGKVLETPSS-EENVTFTPILLENKDEKKEEKLETSSLPSSSKG-KSHIVDYSPYVLKA

Query:  HFPSRLAPKKK
        HFPSRLAPK K
Subjt:  HFPSRLAPKKK

A0A5A7VQ60 Retrotransposon gag protein5.3e-7669.81Show/hide
Query:  MLNM-TTLLTSFVQGGSVKVAKCGVCGLVGHPNDKCPDLVEEVNVIRKYDPHSNTYNTGWRDDPNLRWGNDNQRPSQATSSSNNQGTNLEDLVKALATNT
        MLNM TTLLTSFVQG  +KV KCGVCGLVGH N+KCP+++E+VN++R+YDPHSNTYN+GWRD+PNLRWGNDNQ+ +QA S+S+NQGTNLED++KALATNT
Subjt:  MLNM-TTLLTSFVQGGSVKVAKCGVCGLVGHPNDKCPDLVEEVNVIRKYDPHSNTYNTGWRDDPNLRWGNDNQRPSQATSSSNNQGTNLEDLVKALATNT

Query:  ISFQNEMKQQMSHLTNAISKLEGKGKLPAQPDHANVSAISLRSGKVLETPSS-EENVTFTPILLENKDEKKEEKLETSSLPSSSKG-KSHIVDYSPYVLK
        +SFQ EMKQQM+ LT AISK++GKGKLPAQ DHANVSAISLRSGK+L+TP++ E+ VT  P+ L +K+E KEEK+ET+  PS+SK  KS + D++PY+ K
Subjt:  ISFQNEMKQQMSHLTNAISKLEGKGKLPAQPDHANVSAISLRSGKVLETPSS-EENVTFTPILLENKDEKKEEKLETSSLPSSSKG-KSHIVDYSPYVLK

Query:  AHFPSRLAPKKK
          FPSRL PKKK
Subjt:  AHFPSRLAPKKK

A0A5D3CRR8 Retrotransposon gag protein4.5e-7568.25Show/hide
Query:  MLNMTTLLTSFVQGGSVKVAKCGVCGLVGHPNDKCPDLVEEVNVIRKYDPHSNTYNTGWRDDPNLRWGNDNQRPSQATSSSNNQGTNLEDLVKALATNTI
        MLNMTTLLTSFVQG  +KV KCGVCGLVGHPNDKCP+++E+VN++RKYDPH NTYN+GWRD+PNLRWGNDNQ+ +QA S+S+NQGTNLED++KALATNT+
Subjt:  MLNMTTLLTSFVQGGSVKVAKCGVCGLVGHPNDKCPDLVEEVNVIRKYDPHSNTYNTGWRDDPNLRWGNDNQRPSQATSSSNNQGTNLEDLVKALATNTI

Query:  SFQNEMKQQMSHLTNAISKLEGKGKLPAQPDHANVSAISLRSGKVLETPSS-EENVTFTPILLENKDEKKEEKLETSSLPSSSKG-KSHIVDYSPYVLKA
        SFQ EMKQQM+ LT AISK++GKGKL AQ ++ANVSA+SLRSGK+L+TP++ E+  T  P+ L  K+E KEEK+ET+  P +SK  K  + D++PY+ K 
Subjt:  SFQNEMKQQMSHLTNAISKLEGKGKLPAQPDHANVSAISLRSGKVLETPSS-EENVTFTPILLENKDEKKEEKLETSSLPSSSKG-KSHIVDYSPYVLKA

Query:  HFPSRLAPKKK
         FPSRLAPKKK
Subjt:  HFPSRLAPKKK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTTAATATGACTACTCTACTAACTTCCTTTGTGCAAGGTGGATCTGTTAAAGTTGCAAAGTGCGGGGTGTGCGGTCTAGTCGGACATCCTAATGACAAGTGCCCTGA
CTTAGTGGAAGAGGTAAATGTCATTAGGAAGTACGATCCTCATAGTAACACTTACAACACCGGTTGGAGAGACGACCCTAATCTGAGGTGGGGAAACGACAACCAAAGAC
CCTCGCAAGCAACCTCCTCTTCAAACAATCAAGGTACTAATTTGGAAGATTTAGTAAAAGCCCTTGCTACTAATACAATCTCTTTTCAGAATGAAATGAAGCAACAAATG
TCTCATCTAACAAATGCAATAAGCAAACTAGAAGGTAAAGGCAAACTTCCGGCTCAGCCTGATCATGCCAACGTAAGTGCCATCTCGCTTAGAAGCGGTAAGGTTCTGGA
AACCCCTTCAAGTGAAGAAAATGTAACTTTTACCCCTATCCTTCTAGAAAATAAAGATGAGAAAAAAGAAGAAAAGTTAGAAACTAGTTCTTTACCATCTTCTTCAAAAG
GTAAATCTCATATTGTTGATTATTCTCCATATGTCCTTAAGGCTCATTTTCCTTCCAGGTTAGCTCCTAAGAAGAAATAG
mRNA sequenceShow/hide mRNA sequence
ATGCTTAATATGACTACTCTACTAACTTCCTTTGTGCAAGGTGGATCTGTTAAAGTTGCAAAGTGCGGGGTGTGCGGTCTAGTCGGACATCCTAATGACAAGTGCCCTGA
CTTAGTGGAAGAGGTAAATGTCATTAGGAAGTACGATCCTCATAGTAACACTTACAACACCGGTTGGAGAGACGACCCTAATCTGAGGTGGGGAAACGACAACCAAAGAC
CCTCGCAAGCAACCTCCTCTTCAAACAATCAAGGTACTAATTTGGAAGATTTAGTAAAAGCCCTTGCTACTAATACAATCTCTTTTCAGAATGAAATGAAGCAACAAATG
TCTCATCTAACAAATGCAATAAGCAAACTAGAAGGTAAAGGCAAACTTCCGGCTCAGCCTGATCATGCCAACGTAAGTGCCATCTCGCTTAGAAGCGGTAAGGTTCTGGA
AACCCCTTCAAGTGAAGAAAATGTAACTTTTACCCCTATCCTTCTAGAAAATAAAGATGAGAAAAAAGAAGAAAAGTTAGAAACTAGTTCTTTACCATCTTCTTCAAAAG
GTAAATCTCATATTGTTGATTATTCTCCATATGTCCTTAAGGCTCATTTTCCTTCCAGGTTAGCTCCTAAGAAGAAATAG
Protein sequenceShow/hide protein sequence
MLNMTTLLTSFVQGGSVKVAKCGVCGLVGHPNDKCPDLVEEVNVIRKYDPHSNTYNTGWRDDPNLRWGNDNQRPSQATSSSNNQGTNLEDLVKALATNTISFQNEMKQQM
SHLTNAISKLEGKGKLPAQPDHANVSAISLRSGKVLETPSSEENVTFTPILLENKDEKKEEKLETSSLPSSSKGKSHIVDYSPYVLKAHFPSRLAPKKK