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PI0016494 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0016494
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionReverse transcriptase
Genome locationchr05:15990313..15991329
RNA-Seq ExpressionPI0016494
SyntenyPI0016494
Gene Ontology termsGO:0006807 - nitrogen compound metabolic process (biological process)
GO:0043170 - macromolecule metabolic process (biological process)
GO:0044238 - primary metabolic process (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
GO:0016787 - hydrolase activity (molecular function)
InterPro domainsIPR001878 - Zinc finger, CCHC-type
IPR005162 - Retrotransposon gag domain
IPR036875 - Zinc finger, CCHC-type superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0035974.1 hypothetical protein E6C27_scaffold56G001830 [Cucumis melo var. makuwa]1.0e-2040.11Show/hide
Query:  KYFSKAYREGRQDEFLHLTQEDMMVAKYEKKFTSLAK---------------------SEIRTSVTGCVAWCKFSELVEAALHVEKSLTKGKEIVMSKRS
        KYFSK YR+ ++DEFLHL Q ++ V +Y+KKFT LAK                      +IRT V   V    +++LV+A L VEKS+  G +   S  S
Subjt:  KYFSKAYREGRQDEFLHLTQEDMMVAKYEKKFTSLAK---------------------SEIRTSVTGCVAWCKFSELVEAALHVEKSLTKGKEIVMSKRS

Query:  GEVERKSGEERSSKRTKASVSQESRWSKNQRSPCVNCGRTHTGICRQNTTWCYKCGKEGHYQRECKKKTVRSAE-ETRTEMASHSVQ
        GE E+ S E   +K+ K  VSQES WS +++  C  CG+ H+G CR+ +  C++C K+ HY+ E + K     E  T+  +ASHSVQ
Subjt:  GEVERKSGEERSSKRTKASVSQESRWSKNQRSPCVNCGRTHTGICRQNTTWCYKCGKEGHYQRECKKKTVRSAE-ETRTEMASHSVQ

KAA0060484.1 Gag protease polyprotein-like protein [Cucumis melo var. makuwa]1.7e-2034.2Show/hide
Query:  LKEGVENWWALEEGRR---GDVSWAEFKEVFNKKYFSKAYREGRQDEFLHLTQEDMMVAKYEKKFTSLA---------------------KSEIRTSVTG
        L+ G E+WW +EE RR   GD+SW EFK+ F  K++ +++R+ +++EFL LTQ  M +A+YEKK+T L+                     + EIRT VT 
Subjt:  LKEGVENWWALEEGRR---GDVSWAEFKEVFNKKYFSKAYREGRQDEFLHLTQEDMMVAKYEKKFTSLA---------------------KSEIRTSVTG

Query:  CVAWCKFSELVEAALHVEKSLTKGKE------IVMSKRSGEVERKSGEERS-------------------SKRTKASVSQESRWSKNQRSPCVNCGRTHT
        C  W  FS+LVEAAL VEKSL + K+       V +  S     + G+ERS                   S  +K+  S  ++ S     P  + G +H 
Subjt:  CVAWCKFSELVEAALHVEKSLTKGKE------IVMSKRSGEVERKSGEERS-------------------SKRTKASVSQESRWSKNQRSPCVNCGRTHT

Query:  GICRQN--------TTWCYKCGKEGHYQREC
         I R +        ++ CY CG+ GHY+R+C
Subjt:  GICRQN--------TTWCYKCGKEGHYQREC

KAA0068140.1 gag protease polyprotein [Cucumis melo var. makuwa]8.2e-2336.17Show/hide
Query:  VENWWALEEGRRGD---VSWAEFKEVFNKKYFSKAYREGRQDEFLHLTQEDMMVAKYEKKFTSLAKSEIRTSVTGCVAWCKFSELVEAALHVEKSLTKGK
        V++WW L   R G+   +SW +F++VF+ K++ +++ + +++EF++L Q DM +AKY K    L        +T    W  FS+++EAA+ V+++L + +
Subjt:  VENWWALEEGRRGD---VSWAEFKEVFNKKYFSKAYREGRQDEFLHLTQEDMMVAKYEKKFTSLAKSEIRTSVTGCVAWCKFSELVEAALHVEKSLTKGK

Query:  EIVMSKR-----SGEVERKSGEERSSKRTKASVSQESRWSKNQRSPCVNCGRTHTGICRQNTTWCYKCGKEGHYQRECKKKTVRSAEE
        +    K+     SGE ERKS  E SSK+ K+S  Q SRW+ +Q+     CG+ H+G+C QN+  C+KCG+ GH+Q+E      +S  E
Subjt:  EIVMSKR-----SGEVERKSGEERSSKRTKASVSQESRWSKNQRSPCVNCGRTHTGICRQNTTWCYKCGKEGHYQRECKKKTVRSAEE

TYJ95881.1 retrotransposon protein, putative, Ty3-gypsy subclass [Cucumis melo var. makuwa]2.6e-2131.78Show/hide
Query:  DSEAHSVNPDARRVVGEELYDKVAQRLIDGL---SRDLEKKFGVERLK----------------------------------------------EGVENW
        +S+A S  P     V E+L D++AQRL+ G+     D EKK+G ERLK                                                 E+W
Subjt:  DSEAHSVNPDARRVVGEELYDKVAQRLIDGL---SRDLEKKFGVERLK----------------------------------------------EGVENW

Query:  WALEEGRR---GDVSWAEFKEVFNKKYFSKAYREGRQDEFLHLTQEDMMVAKYEKKFTSLAK---------------------SEIRTSVTGCVAWCKFS
        W +EE RR   GD+SW EFK+ F  K++ +++R+ + +EF+ LTQ  M VA+YEKK+T L+K                      EIRT VT C  W  FS
Subjt:  WALEEGRR---GDVSWAEFKEVFNKKYFSKAYREGRQDEFLHLTQEDMMVAKYEKKFTSLAK---------------------SEIRTSVTGCVAWCKFS

Query:  ELVEAALHVEKSLTKGK-EIVMSKR-----SGEVERKSGEERSSK---RTKASVSQESRWSKN-----------QRSPCVNCGRTHTG---ICRQN----
        +LVE AL VEKSL + K E   SK      S     + G+ERS +   R  +  S +S++S +           QRS   +   + TG   + R N    
Subjt:  ELVEAALHVEKSLTKGK-EIVMSKR-----SGEVERKSGEERSSK---RTKASVSQESRWSKN-----------QRSPCVNCGRTHTG---ICRQN----

Query:  ----TTWCYKCGKEGHYQREC
            ++ CY C + GHY+R+C
Subjt:  ----TTWCYKCGKEGHYQREC

TYK15233.1 uncharacterized protein E5676_scaffold892G00030 [Cucumis melo var. makuwa]3.8e-2034.63Show/hide
Query:  LKEGVENWWALEEGRR---GDVSWAEFKEVFNKKYFSKAYREGRQDEFLHLTQEDMMVAKYEKKFTSLAK---------------------SEIRTSVTG
        L+ G E+WW +EE RR   GD+SW EFK+ F  K++ +++R+ +++EFL LTQ  M VA+YEKK+T L+K                      EIRTSVT 
Subjt:  LKEGVENWWALEEGRR---GDVSWAEFKEVFNKKYFSKAYREGRQDEFLHLTQEDMMVAKYEKKFTSLAK---------------------SEIRTSVTG

Query:  CVAWCKFSELVEAALHVEKSLTKGK------EIVMSKRSGEVERKSGEERSSKRTKASVSQ-------------------ESRWSKNQRSPCVNCGRTHT
        C  W  FS+LVEAAL V KSL + K      + V +  S     + G+ERS +      S+                   E++ S     P  + G +H 
Subjt:  CVAWCKFSELVEAALHVEKSLTKGK------EIVMSKRSGEVERKSGEERSSKRTKASVSQ-------------------ESRWSKNQRSPCVNCGRTHT

Query:  GICRQN--------TTWCYKCGKEGHYQREC
         I R +        ++ CY CG+ GHY+R+C
Subjt:  GICRQN--------TTWCYKCGKEGHYQREC

TrEMBL top hitse value%identityAlignment
A0A5A7TBS0 CCHC-type domain-containing protein1.8e-2034.63Show/hide
Query:  LKEGVENWWALEEGRR---GDVSWAEFKEVFNKKYFSKAYREGRQDEFLHLTQEDMMVAKYEKKFTSLAK---------------------SEIRTSVTG
        L+ G E+WW +EE RR   GD+SW EFK+ F  K++ +++R+ +++EFL LTQ  M VA+YEKK+T L+K                      EIRTSVT 
Subjt:  LKEGVENWWALEEGRR---GDVSWAEFKEVFNKKYFSKAYREGRQDEFLHLTQEDMMVAKYEKKFTSLAK---------------------SEIRTSVTG

Query:  CVAWCKFSELVEAALHVEKSLTKGK------EIVMSKRSGEVERKSGEERSSKRTKASVSQ-------------------ESRWSKNQRSPCVNCGRTHT
        C  W  FS+LVEAAL V KSL + K      + V +  S     + G+ERS +      S+                   E++ S     P  + G +H 
Subjt:  CVAWCKFSELVEAALHVEKSLTKGK------EIVMSKRSGEVERKSGEERSSKRTKASVSQ-------------------ESRWSKNQRSPCVNCGRTHT

Query:  GICRQN--------TTWCYKCGKEGHYQREC
         I R +        ++ CY CG+ GHY+R+C
Subjt:  GICRQN--------TTWCYKCGKEGHYQREC

A0A5A7UZM6 Gag protease polyprotein-like protein8.3e-2134.2Show/hide
Query:  LKEGVENWWALEEGRR---GDVSWAEFKEVFNKKYFSKAYREGRQDEFLHLTQEDMMVAKYEKKFTSLA---------------------KSEIRTSVTG
        L+ G E+WW +EE RR   GD+SW EFK+ F  K++ +++R+ +++EFL LTQ  M +A+YEKK+T L+                     + EIRT VT 
Subjt:  LKEGVENWWALEEGRR---GDVSWAEFKEVFNKKYFSKAYREGRQDEFLHLTQEDMMVAKYEKKFTSLA---------------------KSEIRTSVTG

Query:  CVAWCKFSELVEAALHVEKSLTKGKE------IVMSKRSGEVERKSGEERS-------------------SKRTKASVSQESRWSKNQRSPCVNCGRTHT
        C  W  FS+LVEAAL VEKSL + K+       V +  S     + G+ERS                   S  +K+  S  ++ S     P  + G +H 
Subjt:  CVAWCKFSELVEAALHVEKSLTKGKE------IVMSKRSGEVERKSGEERS-------------------SKRTKASVSQESRWSKNQRSPCVNCGRTHT

Query:  GICRQN--------TTWCYKCGKEGHYQREC
         I R +        ++ CY CG+ GHY+R+C
Subjt:  GICRQN--------TTWCYKCGKEGHYQREC

A0A5D3BB91 Reverse transcriptase1.3e-2131.78Show/hide
Query:  DSEAHSVNPDARRVVGEELYDKVAQRLIDGL---SRDLEKKFGVERLK----------------------------------------------EGVENW
        +S+A S  P     V E+L D++AQRL+ G+     D EKK+G ERLK                                                 E+W
Subjt:  DSEAHSVNPDARRVVGEELYDKVAQRLIDGL---SRDLEKKFGVERLK----------------------------------------------EGVENW

Query:  WALEEGRR---GDVSWAEFKEVFNKKYFSKAYREGRQDEFLHLTQEDMMVAKYEKKFTSLAK---------------------SEIRTSVTGCVAWCKFS
        W +EE RR   GD+SW EFK+ F  K++ +++R+ + +EF+ LTQ  M VA+YEKK+T L+K                      EIRT VT C  W  FS
Subjt:  WALEEGRR---GDVSWAEFKEVFNKKYFSKAYREGRQDEFLHLTQEDMMVAKYEKKFTSLAK---------------------SEIRTSVTGCVAWCKFS

Query:  ELVEAALHVEKSLTKGK-EIVMSKR-----SGEVERKSGEERSSK---RTKASVSQESRWSKN-----------QRSPCVNCGRTHTG---ICRQN----
        +LVE AL VEKSL + K E   SK      S     + G+ERS +   R  +  S +S++S +           QRS   +   + TG   + R N    
Subjt:  ELVEAALHVEKSLTKGK-EIVMSKR-----SGEVERKSGEERSSK---RTKASVSQESRWSKN-----------QRSPCVNCGRTHTG---ICRQN----

Query:  ----TTWCYKCGKEGHYQREC
            ++ CY C + GHY+R+C
Subjt:  ----TTWCYKCGKEGHYQREC

A0A5D3DC62 Gag protease polyprotein4.0e-2336.17Show/hide
Query:  VENWWALEEGRRGD---VSWAEFKEVFNKKYFSKAYREGRQDEFLHLTQEDMMVAKYEKKFTSLAKSEIRTSVTGCVAWCKFSELVEAALHVEKSLTKGK
        V++WW L   R G+   +SW +F++VF+ K++ +++ + +++EF++L Q DM +AKY K    L        +T    W  FS+++EAA+ V+++L + +
Subjt:  VENWWALEEGRRGD---VSWAEFKEVFNKKYFSKAYREGRQDEFLHLTQEDMMVAKYEKKFTSLAKSEIRTSVTGCVAWCKFSELVEAALHVEKSLTKGK

Query:  EIVMSKR-----SGEVERKSGEERSSKRTKASVSQESRWSKNQRSPCVNCGRTHTGICRQNTTWCYKCGKEGHYQRECKKKTVRSAEE
        +    K+     SGE ERKS  E SSK+ K+S  Q SRW+ +Q+     CG+ H+G+C QN+  C+KCG+ GH+Q+E      +S  E
Subjt:  EIVMSKR-----SGEVERKSGEERSSKRTKASVSQESRWSKNQRSPCVNCGRTHTGICRQNTTWCYKCGKEGHYQRECKKKTVRSAEE

A0A5D3E3Q3 Retrotrans_gag domain-containing protein4.9e-2140.11Show/hide
Query:  KYFSKAYREGRQDEFLHLTQEDMMVAKYEKKFTSLAK---------------------SEIRTSVTGCVAWCKFSELVEAALHVEKSLTKGKEIVMSKRS
        KYFSK YR+ ++DEFLHL Q ++ V +Y+KKFT LAK                      +IRT V   V    +++LV+A L VEKS+  G +   S  S
Subjt:  KYFSKAYREGRQDEFLHLTQEDMMVAKYEKKFTSLAK---------------------SEIRTSVTGCVAWCKFSELVEAALHVEKSLTKGKEIVMSKRS

Query:  GEVERKSGEERSSKRTKASVSQESRWSKNQRSPCVNCGRTHTGICRQNTTWCYKCGKEGHYQRECKKKTVRSAE-ETRTEMASHSVQ
        GE E+ S E   +K+ K  VSQES WS +++  C  CG+ H+G CR+ +  C++C K+ HY+ E + K     E  T+  +ASHSVQ
Subjt:  GEVERKSGEERSSKRTKASVSQESRWSKNQRSPCVNCGRTHTGICRQNTTWCYKCGKEGHYQRECKKKTVRSAE-ETRTEMASHSVQ

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATTCCGAGGCTCATTCGGTGAATCCAGATGCGAGAAGGGTGGTGGGAGAGGAATTGTATGATAAGGTGGCTCAGAGGTTAATTGATGGATTATCAAGAGATCTGGA
GAAGAAGTTTGGAGTAGAGCGACTCAAGGAGGGAGTAGAAAATTGGTGGGCGTTAGAAGAAGGAAGACGAGGCGATGTGAGCTGGGCCGAATTCAAAGAAGTTTTTAATA
AGAAGTATTTCTCGAAAGCTTATAGAGAGGGGAGGCAAGATGAATTCTTACATTTGACACAAGAGGATATGATGGTAGCAAAATACGAGAAAAAGTTCACAAGTTTAGCA
AAGTCTGAAATTAGAACGTCAGTGACAGGTTGTGTTGCTTGGTGCAAATTTTCTGAACTTGTTGAGGCAGCGTTACACGTGGAGAAAAGTTTGACAAAAGGAAAGGAAAT
AGTAATGTCTAAGCGTAGTGGAGAGGTGGAAAGGAAAAGTGGGGAGGAAAGAAGTTCCAAGCGAACTAAGGCAAGTGTTAGCCAAGAGTCACGTTGGAGTAAGAATCAGA
GGTCTCCCTGTGTGAACTGTGGAAGGACGCATACAGGGATTTGTAGGCAAAATACCACATGGTGTTATAAGTGTGGGAAGGAAGGACATTATCAAAGAGAGTGTAAAAAA
AAAACTGTTCGTAGTGCGGAGGAAACAAGGACAGAAATGGCTTCACACTCGGTGCAACAACCCACACAAGGAGGACCAGTACTTGACAAAGGAAAGCAAACTGTGGAGAT
AATGAAATTCTTAAAGGTGGGGAGAATTGTGAGCACTGTGTTCTGA
mRNA sequenceShow/hide mRNA sequence
ATGGATTCCGAGGCTCATTCGGTGAATCCAGATGCGAGAAGGGTGGTGGGAGAGGAATTGTATGATAAGGTGGCTCAGAGGTTAATTGATGGATTATCAAGAGATCTGGA
GAAGAAGTTTGGAGTAGAGCGACTCAAGGAGGGAGTAGAAAATTGGTGGGCGTTAGAAGAAGGAAGACGAGGCGATGTGAGCTGGGCCGAATTCAAAGAAGTTTTTAATA
AGAAGTATTTCTCGAAAGCTTATAGAGAGGGGAGGCAAGATGAATTCTTACATTTGACACAAGAGGATATGATGGTAGCAAAATACGAGAAAAAGTTCACAAGTTTAGCA
AAGTCTGAAATTAGAACGTCAGTGACAGGTTGTGTTGCTTGGTGCAAATTTTCTGAACTTGTTGAGGCAGCGTTACACGTGGAGAAAAGTTTGACAAAAGGAAAGGAAAT
AGTAATGTCTAAGCGTAGTGGAGAGGTGGAAAGGAAAAGTGGGGAGGAAAGAAGTTCCAAGCGAACTAAGGCAAGTGTTAGCCAAGAGTCACGTTGGAGTAAGAATCAGA
GGTCTCCCTGTGTGAACTGTGGAAGGACGCATACAGGGATTTGTAGGCAAAATACCACATGGTGTTATAAGTGTGGGAAGGAAGGACATTATCAAAGAGAGTGTAAAAAA
AAAACTGTTCGTAGTGCGGAGGAAACAAGGACAGAAATGGCTTCACACTCGGTGCAACAACCCACACAAGGAGGACCAGTACTTGACAAAGGAAAGCAAACTGTGGAGAT
AATGAAATTCTTAAAGGTGGGGAGAATTGTGAGCACTGTGTTCTGA
Protein sequenceShow/hide protein sequence
MDSEAHSVNPDARRVVGEELYDKVAQRLIDGLSRDLEKKFGVERLKEGVENWWALEEGRRGDVSWAEFKEVFNKKYFSKAYREGRQDEFLHLTQEDMMVAKYEKKFTSLA
KSEIRTSVTGCVAWCKFSELVEAALHVEKSLTKGKEIVMSKRSGEVERKSGEERSSKRTKASVSQESRWSKNQRSPCVNCGRTHTGICRQNTTWCYKCGKEGHYQRECKK
KTVRSAEETRTEMASHSVQQPTQGGPVLDKGKQTVEIMKFLKVGRIVSTVF