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PI0016541 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0016541
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrotrans_gag domain-containing protein
Genome locationchr10:1158909..1159574
RNA-Seq ExpressionPI0016541
SyntenyPI0016541
Gene Ontology termsGO:0006259 - DNA metabolic process (biological process)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0040414.1 uncharacterized protein E6C27_scaffold35G00340 [Cucumis melo var. makuwa]1.2e-7264.57Show/hide
Query:  MSTEERHVSPEEQVIEGSVTQGRKKQHSPTRHSKSKGPTTREHVDTRLTNLEQGLQDVQLSVGRLSDIFDELVQENAEITTAAKELVEELGRSFRRELNE
        MS EE H SP EQVIEG VT+GRK+QHSPTR SKSKGP  REHVDTRLTNLEQG++DVQL+VGRLS+ F+ELVQENAEIT+ AKE++E++GR+F+ EL E
Subjt:  MSTEERHVSPEEQVIEGSVTQGRKKQHSPTRHSKSKGPTTREHVDTRLTNLEQGLQDVQLSVGRLSDIFDELVQENAEITTAAKELVEELGRSFRRELNE

Query:  MAS---ALKAFVEGELRELHSKYSTLDTKIDTVCSKCHSKHVTGASTSTSNQPAVPGTYAIKVLKLDTYNGARNTTVIENFLFGLEHYFDALVVVDDGAR
        +AS    LKAFVEGEL  LH+K  + +T++D +C +C SKH+   + STS  P   GT  IKV K D YNG RN TV++NFLFGLE YF AL V DD AR
Subjt:  MAS---ALKAFVEGELRELHSKYSTLDTKIDTVCSKCHSKHVTGASTSTSNQPAVPGTYAIKVLKLDTYNGARNTTVIENFLFGLEHYFDALVVVDDGAR

Query:  INNGPTYLRDAAKLWWRCKYLER
        IN+ PT+LRDAA+LWWR KY ++
Subjt:  INNGPTYLRDAAKLWWRCKYLER

KAA0040659.1 uncharacterized protein E6C27_scaffold370G00130 [Cucumis melo var. makuwa]6.4e-7465.02Show/hide
Query:  MSTEERHVSPEEQVIEGSVTQGRKKQHSPTRHSKSKGPTTREHVDTRLTNLEQGLQDVQLSVGRLSDIFDELVQENAEITTAAKELVEELGRSFRRELNE
        MS EE H SP EQVIEG VT+GRK+QHSPTR SKSKGP  REHVDTRLTNLEQG++DVQL+VGRLS+IF+ELVQENAEIT+ AKE++E++GR+F++EL E
Subjt:  MSTEERHVSPEEQVIEGSVTQGRKKQHSPTRHSKSKGPTTREHVDTRLTNLEQGLQDVQLSVGRLSDIFDELVQENAEITTAAKELVEELGRSFRRELNE

Query:  MAS---ALKAFVEGELRELHSKYSTLDTKIDTVCSKCHSKHVTGASTSTSNQPAVPGTYAIKVLKLDTYNGARNTTVIENFLFGLEHYFDALVVVDDGAR
        +AS    LKAFVEGEL +LH+K  + +T++D +C +C SKH+   + STS  P   GT  IKV K D YNG RN TV++NFLFGLE YF AL V DD AR
Subjt:  MAS---ALKAFVEGELRELHSKYSTLDTKIDTVCSKCHSKHVTGASTSTSNQPAVPGTYAIKVLKLDTYNGARNTTVIENFLFGLEHYFDALVVVDDGAR

Query:  INNGPTYLRDAAKLWWRCKYLER
        IN+ PT+LRDAA+LWWR KY ++
Subjt:  INNGPTYLRDAAKLWWRCKYLER

KAA0042140.1 uncharacterized protein E6C27_scaffold67G006290 [Cucumis melo var. makuwa]3.7e-7465.02Show/hide
Query:  MSTEERHVSPEEQVIEGSVTQGRKKQHSPTRHSKSKGPTTREHVDTRLTNLEQGLQDVQLSVGRLSDIFDELVQENAEITTAAKELVEELGRSFRRELNE
        MS EE H SP EQVIEG VT+GRKKQHSPTR SKSKGPT REHVDTRLTNLE+G++DVQL+VGRLS+ F+ELVQENAEIT+ AKE++E++GR+F++EL E
Subjt:  MSTEERHVSPEEQVIEGSVTQGRKKQHSPTRHSKSKGPTTREHVDTRLTNLEQGLQDVQLSVGRLSDIFDELVQENAEITTAAKELVEELGRSFRRELNE

Query:  MAS---ALKAFVEGELRELHSKYSTLDTKIDTVCSKCHSKHVTGASTSTSNQPAVPGTYAIKVLKLDTYNGARNTTVIENFLFGLEHYFDALVVVDDGAR
        +AS    LKAFVEGEL +LH+K  + +T++D +C +CHSKH+   + STS  P   GT  IKV K D YNG RN TV++NFLFGLE YF AL V DD AR
Subjt:  MAS---ALKAFVEGELRELHSKYSTLDTKIDTVCSKCHSKHVTGASTSTSNQPAVPGTYAIKVLKLDTYNGARNTTVIENFLFGLEHYFDALVVVDDGAR

Query:  INNGPTYLRDAAKLWWRCKYLER
        IN+ PT+LRD A+LWWR KY ++
Subjt:  INNGPTYLRDAAKLWWRCKYLER

KAA0065760.1 polyprotein [Cucumis melo var. makuwa]3.5e-7264.13Show/hide
Query:  MSTEERHVSPEEQVIEGSVTQGRKKQHSPTRHSKSKGPTTREHVDTRLTNLEQGLQDVQLSVGRLSDIFDELVQENAEITTAAKELVEELGRSFRRELNE
        MS EE H SP EQVIEG VT+GRK+QHSPTR SKSKGP  REHVDTRLTNLEQG++DVQL+VGRLS+ F+ELVQENAEIT+ AKE++E++GR+F+ EL E
Subjt:  MSTEERHVSPEEQVIEGSVTQGRKKQHSPTRHSKSKGPTTREHVDTRLTNLEQGLQDVQLSVGRLSDIFDELVQENAEITTAAKELVEELGRSFRRELNE

Query:  MAS---ALKAFVEGELRELHSKYSTLDTKIDTVCSKCHSKHVTGASTSTSNQPAVPGTYAIKVLKLDTYNGARNTTVIENFLFGLEHYFDALVVVDDGAR
        + S    LKAFVEGEL  LH+K  + +T++D +C +C SKH+   + STS  P   GT  IKV K D YNG RN TV++NFLFGLE YF AL V DD AR
Subjt:  MAS---ALKAFVEGELRELHSKYSTLDTKIDTVCSKCHSKHVTGASTSTSNQPAVPGTYAIKVLKLDTYNGARNTTVIENFLFGLEHYFDALVVVDDGAR

Query:  INNGPTYLRDAAKLWWRCKYLER
        IN+ PT+LRDAA+LWWR KY ++
Subjt:  INNGPTYLRDAAKLWWRCKYLER

TYK18079.1 uncharacterized protein E5676_scaffold306G004150 [Cucumis melo var. makuwa]3.7e-7465.02Show/hide
Query:  MSTEERHVSPEEQVIEGSVTQGRKKQHSPTRHSKSKGPTTREHVDTRLTNLEQGLQDVQLSVGRLSDIFDELVQENAEITTAAKELVEELGRSFRRELNE
        MS EE H SP EQVIEG VT+GRKKQHSPTR SKSKGPT REHVDTRLTNLE+G++DVQL+VGRLS+ F+ELVQENAEIT+ AKE++E++GR+F++EL E
Subjt:  MSTEERHVSPEEQVIEGSVTQGRKKQHSPTRHSKSKGPTTREHVDTRLTNLEQGLQDVQLSVGRLSDIFDELVQENAEITTAAKELVEELGRSFRRELNE

Query:  MAS---ALKAFVEGELRELHSKYSTLDTKIDTVCSKCHSKHVTGASTSTSNQPAVPGTYAIKVLKLDTYNGARNTTVIENFLFGLEHYFDALVVVDDGAR
        +AS    LKAFVEGEL +LH+K  + +T++D +C +CHSKH+   + STS  P   GT  IKV K D YNG RN TV++NFLFGLE YF AL V DD AR
Subjt:  MAS---ALKAFVEGELRELHSKYSTLDTKIDTVCSKCHSKHVTGASTSTSNQPAVPGTYAIKVLKLDTYNGARNTTVIENFLFGLEHYFDALVVVDDGAR

Query:  INNGPTYLRDAAKLWWRCKYLER
        IN+ PT+LRD A+LWWR KY ++
Subjt:  INNGPTYLRDAAKLWWRCKYLER

TrEMBL top hitse value%identityAlignment
A0A5A7TAA5 Uncharacterized protein5.8e-7364.57Show/hide
Query:  MSTEERHVSPEEQVIEGSVTQGRKKQHSPTRHSKSKGPTTREHVDTRLTNLEQGLQDVQLSVGRLSDIFDELVQENAEITTAAKELVEELGRSFRRELNE
        MS EE H SP EQVIEG VT+GRK+QHSPTR SKSKGP  REHVDTRLTNLEQG++DVQL+VGRLS+ F+ELVQENAEIT+ AKE++E++GR+F+ EL E
Subjt:  MSTEERHVSPEEQVIEGSVTQGRKKQHSPTRHSKSKGPTTREHVDTRLTNLEQGLQDVQLSVGRLSDIFDELVQENAEITTAAKELVEELGRSFRRELNE

Query:  MAS---ALKAFVEGELRELHSKYSTLDTKIDTVCSKCHSKHVTGASTSTSNQPAVPGTYAIKVLKLDTYNGARNTTVIENFLFGLEHYFDALVVVDDGAR
        +AS    LKAFVEGEL  LH+K  + +T++D +C +C SKH+   + STS  P   GT  IKV K D YNG RN TV++NFLFGLE YF AL V DD AR
Subjt:  MAS---ALKAFVEGELRELHSKYSTLDTKIDTVCSKCHSKHVTGASTSTSNQPAVPGTYAIKVLKLDTYNGARNTTVIENFLFGLEHYFDALVVVDDGAR

Query:  INNGPTYLRDAAKLWWRCKYLER
        IN+ PT+LRDAA+LWWR KY ++
Subjt:  INNGPTYLRDAAKLWWRCKYLER

A0A5A7TFP3 Retrotrans_gag domain-containing protein1.8e-7465.02Show/hide
Query:  MSTEERHVSPEEQVIEGSVTQGRKKQHSPTRHSKSKGPTTREHVDTRLTNLEQGLQDVQLSVGRLSDIFDELVQENAEITTAAKELVEELGRSFRRELNE
        MS EE H SP EQVIEG VT+GRKKQHSPTR SKSKGPT REHVDTRLTNLE+G++DVQL+VGRLS+ F+ELVQENAEIT+ AKE++E++GR+F++EL E
Subjt:  MSTEERHVSPEEQVIEGSVTQGRKKQHSPTRHSKSKGPTTREHVDTRLTNLEQGLQDVQLSVGRLSDIFDELVQENAEITTAAKELVEELGRSFRRELNE

Query:  MAS---ALKAFVEGELRELHSKYSTLDTKIDTVCSKCHSKHVTGASTSTSNQPAVPGTYAIKVLKLDTYNGARNTTVIENFLFGLEHYFDALVVVDDGAR
        +AS    LKAFVEGEL +LH+K  + +T++D +C +CHSKH+   + STS  P   GT  IKV K D YNG RN TV++NFLFGLE YF AL V DD AR
Subjt:  MAS---ALKAFVEGELRELHSKYSTLDTKIDTVCSKCHSKHVTGASTSTSNQPAVPGTYAIKVLKLDTYNGARNTTVIENFLFGLEHYFDALVVVDDGAR

Query:  INNGPTYLRDAAKLWWRCKYLER
        IN+ PT+LRD A+LWWR KY ++
Subjt:  INNGPTYLRDAAKLWWRCKYLER

A0A5A7THC0 Reverse transcriptase domain-containing protein3.1e-7465.02Show/hide
Query:  MSTEERHVSPEEQVIEGSVTQGRKKQHSPTRHSKSKGPTTREHVDTRLTNLEQGLQDVQLSVGRLSDIFDELVQENAEITTAAKELVEELGRSFRRELNE
        MS EE H SP EQVIEG VT+GRK+QHSPTR SKSKGP  REHVDTRLTNLEQG++DVQL+VGRLS+IF+ELVQENAEIT+ AKE++E++GR+F++EL E
Subjt:  MSTEERHVSPEEQVIEGSVTQGRKKQHSPTRHSKSKGPTTREHVDTRLTNLEQGLQDVQLSVGRLSDIFDELVQENAEITTAAKELVEELGRSFRRELNE

Query:  MAS---ALKAFVEGELRELHSKYSTLDTKIDTVCSKCHSKHVTGASTSTSNQPAVPGTYAIKVLKLDTYNGARNTTVIENFLFGLEHYFDALVVVDDGAR
        +AS    LKAFVEGEL +LH+K  + +T++D +C +C SKH+   + STS  P   GT  IKV K D YNG RN TV++NFLFGLE YF AL V DD AR
Subjt:  MAS---ALKAFVEGELRELHSKYSTLDTKIDTVCSKCHSKHVTGASTSTSNQPAVPGTYAIKVLKLDTYNGARNTTVIENFLFGLEHYFDALVVVDDGAR

Query:  INNGPTYLRDAAKLWWRCKYLER
        IN+ PT+LRDAA+LWWR KY ++
Subjt:  INNGPTYLRDAAKLWWRCKYLER

A0A5A7VEX8 Polyprotein1.7e-7264.13Show/hide
Query:  MSTEERHVSPEEQVIEGSVTQGRKKQHSPTRHSKSKGPTTREHVDTRLTNLEQGLQDVQLSVGRLSDIFDELVQENAEITTAAKELVEELGRSFRRELNE
        MS EE H SP EQVIEG VT+GRK+QHSPTR SKSKGP  REHVDTRLTNLEQG++DVQL+VGRLS+ F+ELVQENAEIT+ AKE++E++GR+F+ EL E
Subjt:  MSTEERHVSPEEQVIEGSVTQGRKKQHSPTRHSKSKGPTTREHVDTRLTNLEQGLQDVQLSVGRLSDIFDELVQENAEITTAAKELVEELGRSFRRELNE

Query:  MAS---ALKAFVEGELRELHSKYSTLDTKIDTVCSKCHSKHVTGASTSTSNQPAVPGTYAIKVLKLDTYNGARNTTVIENFLFGLEHYFDALVVVDDGAR
        + S    LKAFVEGEL  LH+K  + +T++D +C +C SKH+   + STS  P   GT  IKV K D YNG RN TV++NFLFGLE YF AL V DD AR
Subjt:  MAS---ALKAFVEGELRELHSKYSTLDTKIDTVCSKCHSKHVTGASTSTSNQPAVPGTYAIKVLKLDTYNGARNTTVIENFLFGLEHYFDALVVVDDGAR

Query:  INNGPTYLRDAAKLWWRCKYLER
        IN+ PT+LRDAA+LWWR KY ++
Subjt:  INNGPTYLRDAAKLWWRCKYLER

A0A5D3D3V4 Retrotrans_gag domain-containing protein1.8e-7465.02Show/hide
Query:  MSTEERHVSPEEQVIEGSVTQGRKKQHSPTRHSKSKGPTTREHVDTRLTNLEQGLQDVQLSVGRLSDIFDELVQENAEITTAAKELVEELGRSFRRELNE
        MS EE H SP EQVIEG VT+GRKKQHSPTR SKSKGPT REHVDTRLTNLE+G++DVQL+VGRLS+ F+ELVQENAEIT+ AKE++E++GR+F++EL E
Subjt:  MSTEERHVSPEEQVIEGSVTQGRKKQHSPTRHSKSKGPTTREHVDTRLTNLEQGLQDVQLSVGRLSDIFDELVQENAEITTAAKELVEELGRSFRRELNE

Query:  MAS---ALKAFVEGELRELHSKYSTLDTKIDTVCSKCHSKHVTGASTSTSNQPAVPGTYAIKVLKLDTYNGARNTTVIENFLFGLEHYFDALVVVDDGAR
        +AS    LKAFVEGEL +LH+K  + +T++D +C +CHSKH+   + STS  P   GT  IKV K D YNG RN TV++NFLFGLE YF AL V DD AR
Subjt:  MAS---ALKAFVEGELRELHSKYSTLDTKIDTVCSKCHSKHVTGASTSTSNQPAVPGTYAIKVLKLDTYNGARNTTVIENFLFGLEHYFDALVVVDDGAR

Query:  INNGPTYLRDAAKLWWRCKYLER
        IN+ PT+LRD A+LWWR KY ++
Subjt:  INNGPTYLRDAAKLWWRCKYLER

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCCACCGAGGAAAGGCACGTATCACCCGAGGAGCAAGTCATTGAAGGGTCTGTTACCCAGGGAAGGAAGAAGCAACACTCTCCAACCCGACACTCTAAGTCCAAAGG
ACCGACGACAAGGGAGCATGTCGACACTCGCCTTACCAACCTAGAACAAGGCTTGCAGGATGTTCAACTCTCGGTTGGTAGGCTGAGTGACATCTTTGACGAATTAGTCC
AGGAGAATGCAGAAATCACTACTGCAGCCAAGGAGCTCGTTGAGGAACTTGGACGGTCATTCAGAAGAGAACTAAATGAAATGGCATCTGCCTTAAAGGCTTTTGTCGAA
GGTGAGTTACGTGAACTCCACTCTAAATACAGTACTCTTGATACCAAGATAGATACTGTTTGTTCTAAATGTCATTCCAAGCATGTCACCGGTGCAAGCACTTCGACCAG
TAACCAACCCGCTGTGCCAGGCACCTATGCCATCAAGGTGCTTAAACTTGATACTTATAATGGGGCAAGAAATACCACAGTCATAGAGAACTTCCTCTTCGGCCTAGAGC
ATTATTTTGATGCTCTAGTTGTGGTTGATGATGGAGCCCGGATTAATAATGGCCCAACATACCTACGTGATGCTGCTAAGTTATGGTGGCGATGCAAATACCTCGAACGA
GAGTAG
mRNA sequenceShow/hide mRNA sequence
ATGTCCACCGAGGAAAGGCACGTATCACCCGAGGAGCAAGTCATTGAAGGGTCTGTTACCCAGGGAAGGAAGAAGCAACACTCTCCAACCCGACACTCTAAGTCCAAAGG
ACCGACGACAAGGGAGCATGTCGACACTCGCCTTACCAACCTAGAACAAGGCTTGCAGGATGTTCAACTCTCGGTTGGTAGGCTGAGTGACATCTTTGACGAATTAGTCC
AGGAGAATGCAGAAATCACTACTGCAGCCAAGGAGCTCGTTGAGGAACTTGGACGGTCATTCAGAAGAGAACTAAATGAAATGGCATCTGCCTTAAAGGCTTTTGTCGAA
GGTGAGTTACGTGAACTCCACTCTAAATACAGTACTCTTGATACCAAGATAGATACTGTTTGTTCTAAATGTCATTCCAAGCATGTCACCGGTGCAAGCACTTCGACCAG
TAACCAACCCGCTGTGCCAGGCACCTATGCCATCAAGGTGCTTAAACTTGATACTTATAATGGGGCAAGAAATACCACAGTCATAGAGAACTTCCTCTTCGGCCTAGAGC
ATTATTTTGATGCTCTAGTTGTGGTTGATGATGGAGCCCGGATTAATAATGGCCCAACATACCTACGTGATGCTGCTAAGTTATGGTGGCGATGCAAATACCTCGAACGA
GAGTAG
Protein sequenceShow/hide protein sequence
MSTEERHVSPEEQVIEGSVTQGRKKQHSPTRHSKSKGPTTREHVDTRLTNLEQGLQDVQLSVGRLSDIFDELVQENAEITTAAKELVEELGRSFRRELNEMASALKAFVE
GELRELHSKYSTLDTKIDTVCSKCHSKHVTGASTSTSNQPAVPGTYAIKVLKLDTYNGARNTTVIENFLFGLEHYFDALVVVDDGARINNGPTYLRDAAKLWWRCKYLER
E