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PI0016607 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0016607
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrotransposable element Tf2
Genome locationchr10:5821616..5822953
RNA-Seq ExpressionPI0016607
SyntenyPI0016607
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0032918.1 Retrotransposable element Tf2 [Cucumis melo var. makuwa]5.4e-4474.17Show/hide
Query:  MVDITIKLELDGPSVQEVYSQVFPFKFNFISEDISKTQTFYEFILVDTKFAGITHIHDKNDASKIVYSKLRIFRVLTPSYWKQQMFVGSKFSMSFKSLSY
        MVD+TI+ E DGPSVQEV SQ+FP  FNF+ ED+SKT+TFYE+ILVD+K A ITH+ DKND SKI+YSKLRIFRVLTPSYWKQ MFVG KFS SFK  SY
Subjt:  MVDITIKLELDGPSVQEVYSQVFPFKFNFISEDISKTQTFYEFILVDTKFAGITHIHDKNDASKIVYSKLRIFRVLTPSYWKQQMFVGSKFSMSFKSLSY

Query:  NYCDYRKAWYIILWLQPYNH
        NY DY KAWYI+ WL  YNH
Subjt:  NYCDYRKAWYIILWLQPYNH

KAA0041673.1 Retrotransposable element Tf2 [Cucumis melo var. makuwa]1.9e-4474.38Show/hide
Query:  MVDITIKLELDGPSVQEVYSQVFPFKFNFISEDISKTQTFYEFILVDTKFAGITHIHDKNDASKIVYSKLRIFRVLTPSYWKQQMFVGSKFSMSFKSLSY
        MVD+TI+ E DGPSVQEV SQ+FP  FNF+ ED+SKT+TFYE+ILVD+K A ITH+ DKND SKI+YSKLRIFRVLTPSYWKQ MFVG KFS  FK  SY
Subjt:  MVDITIKLELDGPSVQEVYSQVFPFKFNFISEDISKTQTFYEFILVDTKFAGITHIHDKNDASKIVYSKLRIFRVLTPSYWKQQMFVGSKFSMSFKSLSY

Query:  NYCDYRKAWYIILWLQPYNHS
        NY DY KAWYI+ WLQ YNHS
Subjt:  NYCDYRKAWYIILWLQPYNHS

KAA0056777.1 Retrotransposable element Tf2 [Cucumis melo var. makuwa]1.9e-4474.38Show/hide
Query:  MVDITIKLELDGPSVQEVYSQVFPFKFNFISEDISKTQTFYEFILVDTKFAGITHIHDKNDASKIVYSKLRIFRVLTPSYWKQQMFVGSKFSMSFKSLSY
        MVD+TI+ E DGPSVQEV SQ+FP  FNF+ ED+SKT+TFYE+ILVD+K A ITH+ DKND SKI+YSKLRIFRVLTPSYWKQ MFVG KFS  FK  SY
Subjt:  MVDITIKLELDGPSVQEVYSQVFPFKFNFISEDISKTQTFYEFILVDTKFAGITHIHDKNDASKIVYSKLRIFRVLTPSYWKQQMFVGSKFSMSFKSLSY

Query:  NYCDYRKAWYIILWLQPYNHS
        NY DY KAWYI+ WLQ YNHS
Subjt:  NYCDYRKAWYIILWLQPYNHS

KAA0063832.1 Retrotransposable element Tf2 [Cucumis melo var. makuwa]1.9e-4474.38Show/hide
Query:  MVDITIKLELDGPSVQEVYSQVFPFKFNFISEDISKTQTFYEFILVDTKFAGITHIHDKNDASKIVYSKLRIFRVLTPSYWKQQMFVGSKFSMSFKSLSY
        MVD+TI+ E DGPSVQEV SQ+FP  FNF+ ED+SKT+TFYE+ILVD+K A ITH+ DKND SKI+YSKLRIFRVLTPSYWKQ MFVG KFS  FK  SY
Subjt:  MVDITIKLELDGPSVQEVYSQVFPFKFNFISEDISKTQTFYEFILVDTKFAGITHIHDKNDASKIVYSKLRIFRVLTPSYWKQQMFVGSKFSMSFKSLSY

Query:  NYCDYRKAWYIILWLQPYNHS
        NY DY KAWYI+ WLQ YNHS
Subjt:  NYCDYRKAWYIILWLQPYNHS

TYK28082.1 Retrotransposable element Tf2 [Cucumis melo var. makuwa]5.4e-4474.17Show/hide
Query:  MVDITIKLELDGPSVQEVYSQVFPFKFNFISEDISKTQTFYEFILVDTKFAGITHIHDKNDASKIVYSKLRIFRVLTPSYWKQQMFVGSKFSMSFKSLSY
        MVD+TI+ E DGPSVQEV SQ+FP  FNF+ ED+SKT+TFYE+ILVD+K A ITH+ DKND SKI+YSKLRIFRVLTPSYWKQ MFVG KFS SFK  SY
Subjt:  MVDITIKLELDGPSVQEVYSQVFPFKFNFISEDISKTQTFYEFILVDTKFAGITHIHDKNDASKIVYSKLRIFRVLTPSYWKQQMFVGSKFSMSFKSLSY

Query:  NYCDYRKAWYIILWLQPYNH
        NY DY KAWYI+ WL  YNH
Subjt:  NYCDYRKAWYIILWLQPYNH

TrEMBL top hitse value%identityAlignment
A0A0A0LWK6 Uncharacterized protein6.2e-4669.63Show/hide
Query:  MVDITIKLELDGPSVQEVYSQVFPFKFNFISEDISKTQTFYEFILVDTKFAGITHIHDKNDASKIVYSKLRIFRVLTPSYWKQQMFVGSKFSMSFKSLSY
        MVD+TI+ E DGPSV EV  QVFP  FNF+ ED+SKT+TFYEFILVD+K A ITH+ DKND SKI+YSKLRIF+VLTPSYWKQ MFVG +FS  FK  SY
Subjt:  MVDITIKLELDGPSVQEVYSQVFPFKFNFISEDISKTQTFYEFILVDTKFAGITHIHDKNDASKIVYSKLRIFRVLTPSYWKQQMFVGSKFSMSFKSLSY

Query:  NYCDYRKAWYIILWLQPYNHSC---TKPPNFPSKF
        NY DY KAWYII WLQ YNHSC   T  P+ P+K+
Subjt:  NYCDYRKAWYIILWLQPYNHSC---TKPPNFPSKF

A0A5A7SQU5 Retrotransposable element Tf22.6e-4474.17Show/hide
Query:  MVDITIKLELDGPSVQEVYSQVFPFKFNFISEDISKTQTFYEFILVDTKFAGITHIHDKNDASKIVYSKLRIFRVLTPSYWKQQMFVGSKFSMSFKSLSY
        MVD+TI+ E DGPSVQEV SQ+FP  FNF+ ED+SKT+TFYE+ILVD+K A ITH+ DKND SKI+YSKLRIFRVLTPSYWKQ MFVG KFS SFK  SY
Subjt:  MVDITIKLELDGPSVQEVYSQVFPFKFNFISEDISKTQTFYEFILVDTKFAGITHIHDKNDASKIVYSKLRIFRVLTPSYWKQQMFVGSKFSMSFKSLSY

Query:  NYCDYRKAWYIILWLQPYNH
        NY DY KAWYI+ WL  YNH
Subjt:  NYCDYRKAWYIILWLQPYNH

A0A5A7UVN1 Retrotransposable element Tf29.0e-4574.38Show/hide
Query:  MVDITIKLELDGPSVQEVYSQVFPFKFNFISEDISKTQTFYEFILVDTKFAGITHIHDKNDASKIVYSKLRIFRVLTPSYWKQQMFVGSKFSMSFKSLSY
        MVD+TI+ E DGPSVQEV SQ+FP  FNF+ ED+SKT+TFYE+ILVD+K A ITH+ DKND SKI+YSKLRIFRVLTPSYWKQ MFVG KFS  FK  SY
Subjt:  MVDITIKLELDGPSVQEVYSQVFPFKFNFISEDISKTQTFYEFILVDTKFAGITHIHDKNDASKIVYSKLRIFRVLTPSYWKQQMFVGSKFSMSFKSLSY

Query:  NYCDYRKAWYIILWLQPYNHS
        NY DY KAWYI+ WLQ YNHS
Subjt:  NYCDYRKAWYIILWLQPYNHS

A0A5A7V6D1 Retrotransposable element Tf29.0e-4574.38Show/hide
Query:  MVDITIKLELDGPSVQEVYSQVFPFKFNFISEDISKTQTFYEFILVDTKFAGITHIHDKNDASKIVYSKLRIFRVLTPSYWKQQMFVGSKFSMSFKSLSY
        MVD+TI+ E DGPSVQEV SQ+FP  FNF+ ED+SKT+TFYE+ILVD+K A ITH+ DKND SKI+YSKLRIFRVLTPSYWKQ MFVG KFS  FK  SY
Subjt:  MVDITIKLELDGPSVQEVYSQVFPFKFNFISEDISKTQTFYEFILVDTKFAGITHIHDKNDASKIVYSKLRIFRVLTPSYWKQQMFVGSKFSMSFKSLSY

Query:  NYCDYRKAWYIILWLQPYNHS
        NY DY KAWYI+ WLQ YNHS
Subjt:  NYCDYRKAWYIILWLQPYNHS

A0A5D3C4Q3 Retrotransposable element Tf29.0e-4574.38Show/hide
Query:  MVDITIKLELDGPSVQEVYSQVFPFKFNFISEDISKTQTFYEFILVDTKFAGITHIHDKNDASKIVYSKLRIFRVLTPSYWKQQMFVGSKFSMSFKSLSY
        MVD+TI+ E DGPSVQEV SQ+FP  FNF+ ED+SKT+TFYE+ILVD+K A ITH+ DKND SKI+YSKLRIFRVLTPSYWKQ MFVG KFS  FK  SY
Subjt:  MVDITIKLELDGPSVQEVYSQVFPFKFNFISEDISKTQTFYEFILVDTKFAGITHIHDKNDASKIVYSKLRIFRVLTPSYWKQQMFVGSKFSMSFKSLSY

Query:  NYCDYRKAWYIILWLQPYNHS
        NY DY KAWYI+ WLQ YNHS
Subjt:  NYCDYRKAWYIILWLQPYNHS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTGGATATAACTATTAAACTAGAGTTAGATGGACCTTCAGTCCAAGAAGTCTACAGTCAAGTATTTCCTTTCAAATTTAACTTTATTTCAGAAGACATTTCAAAAAC
CCAAACTTTCTATGAGTTCATATTGGTTGATACCAAATTTGCTGGGATAACTCATATTCATGATAAAAATGATGCTTCCAAAATCGTTTATTCAAAGTTAAGAATTTTTA
GAGTTCTCACTCCGTCCTACTGGAAGCAACAAATGTTTGTGGGAAGTAAATTCTCAATGTCATTTAAGTCGTTGTCTTACAACTACTGTGATTATAGAAAAGCATGGTAC
ATTATTTTATGGCTTCAACCTTATAACCACTCTTGTACGAAACCTCCCAATTTCCCCTCTAAATTTTTTTAA
mRNA sequenceShow/hide mRNA sequence
ATGGTGGATATAACTATTAAACTAGAGTTAGATGGACCTTCAGTCCAAGAAGTCTACAGTCAAGTATTTCCTTTCAAATTTAACTTTATTTCAGAAGACATTTCAAAAAC
CCAAACTTTCTATGAGTTCATATTGGTTGATACCAAATTTGCTGGGATAACTCATATTCATGATAAAAATGATGCTTCCAAAATCGTTTATTCAAAGTTAAGAATTTTTA
GAGTTCTCACTCCGTCCTACTGGAAGCAACAAATGTTTGTGGGAAGTAAATTCTCAATGTCATTTAAGTCGTTGTCTTACAACTACTGTGATTATAGAAAAGCATGGTAC
ATTATTTTATGGCTTCAACCTTATAACCACTCTTGTACGAAACCTCCCAATTTCCCCTCTAAATTTTTTTAA
Protein sequenceShow/hide protein sequence
MVDITIKLELDGPSVQEVYSQVFPFKFNFISEDISKTQTFYEFILVDTKFAGITHIHDKNDASKIVYSKLRIFRVLTPSYWKQQMFVGSKFSMSFKSLSYNYCDYRKAWY
IILWLQPYNHSCTKPPNFPSKFF