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PI0016635 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0016635
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionGag/pol protein
Genome locationchr05:16929954..16930691
RNA-Seq ExpressionPI0016635
SyntenyPI0016635
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0041264.1 hypothetical protein E6C27_scaffold128G002490 [Cucumis melo var. makuwa]9.7e-3141.4Show/hide
Query:  FYATKLNVEEFSVEISGKTVSFNAEAINNLYDLPNNAETPGHEYVVSPIKKMAREALEAIVWPGAAWEIMPTGKYQLYPHQLTTETSVWLFFIKKKIFRM
        FY   +N+EE   E+  K V F  +AIN LY L NN    GH    +P  +  ++ALE I+WPG  W+ MPT KYQL+P+ L TE SVWL FIKK I   
Subjt:  FYATKLNVEEFSVEISGKTVSFNAEAINNLYDLPNNAETPGHEYVVSPIKKMAREALEAIVWPGAAWEIMPTGKYQLYPHQLTTETSVWLFFIKKKIFRM

Query:  RHDSTINLESAMLLYCIMNKWRVNLDDLIASSILSWMRDPKSAMPFPSTVEALCVKVVPFLCVVNQMPIPGGLCSPVALNRMITFH
        RHDSTI++E  MLLY   N      +++    +++W++ P  A PF    + L +K  P L    Q+ +  G+C    L+R IT H
Subjt:  RHDSTINLESAMLLYCIMNKWRVNLDDLIASSILSWMRDPKSAMPFPSTVEALCVKVVPFLCVVNQMPIPGGLCSPVALNRMITFH

KAA0049609.1 transposase [Cucumis melo var. makuwa]3.1e-2946.01Show/hide
Query:  ISGKTVSFNAEAINNLYDLPNN-AETPGHEYVVSPIKKMAREALEAIVWPGAAWEIMPTGKYQLYPHQLTTETSVWLFFIKKKIFRMRHDSTINLESAML
        +  + V F  E IN LYDLPN+    PG   +V   +  A++ ++ IVWP A     PT + QL+PHQLT E +VWLFFIKKKIF   HDSTI  E A++
Subjt:  ISGKTVSFNAEAINNLYDLPNN-AETPGHEYVVSPIKKMAREALEAIVWPGAAWEIMPTGKYQLYPHQLTTETSVWLFFIKKKIFRMRHDSTINLESAML

Query:  LYCIMNKWRVNLDDLIASSILSWMRDPKSAMPFPSTVEALCVKVV-PFLCVVNQMPIPGGLCS
        LYCI  K   NL  ++  + LSWMR+PK+A PFP+TV+ LC+K +      + Q+ + GG C+
Subjt:  LYCIMNKWRVNLDDLIASSILSWMRDPKSAMPFPSTVEALCVKVV-PFLCVVNQMPIPGGLCS

KAA0057652.1 hypothetical protein E6C27_scaffold43054G00260 [Cucumis melo var. makuwa]4.2e-2641.38Show/hide
Query:  ISGKTVSFNAEAINNLYDLPNNAETPGHEYVVSPIKKMAREALEAIVWPGAAWEIMPTGKYQLYPHQLTTETSVWLFFIKKKIFRMRHDSTINLESAMLL
        + GK V F  +AIN L+ L   A+   H    +P ++   +AL+ + WP   W+IMPTGKYQL+   L TE  +WL F+K  I   RHDSTI++E  ML+
Subjt:  ISGKTVSFNAEAINNLYDLPNNAETPGHEYVVSPIKKMAREALEAIVWPGAAWEIMPTGKYQLYPHQLTTETSVWLFFIKKKIFRMRHDSTINLESAMLL

Query:  YCIMNKWRVNLDDLIASSILSWMRDPKSAMPFPSTVEALCVKVVP
        YCIM    VN+ ++I+  I++W++ P+   PF   +E LC+K  P
Subjt:  YCIMNKWRVNLDDLIASSILSWMRDPKSAMPFPSTVEALCVKVVP

KAA0062900.1 gag/pol protein [Cucumis melo var. makuwa]2.2e-3546.51Show/hide
Query:  EFYATKLNVEEFSVEISGKTVSFNAEAINNLYDLPNNAETPGHEYVVSPIKKMAREALEAIVWPGAAWEIMPTG-KYQLYPHQLTTETSVWLFFIKKKIF
        +FY  K N  +  + I  +   FN E IN LY+ PN+AE  G E V    K +A+EAL+ + WPG   E+ P   +YQLYPH LTT+ +VW+FF K KIF
Subjt:  EFYATKLNVEEFSVEISGKTVSFNAEAINNLYDLPNNAETPGHEYVVSPIKKMAREALEAIVWPGAAWEIMPTG-KYQLYPHQLTTETSVWLFFIKKKIF

Query:  RMRHDSTINLESAMLLYCIMNKWRVNLDDLIASSILSWMRDPKSAMPFPSTVEALCVKVVPFLCVVNQMPIP
           +DSTI+++  ++LYCIM K  +NLD++I ++IL+WM  PK AMPFPS +E LC+K +P L    +  IP
Subjt:  RMRHDSTINLESAMLLYCIMNKWRVNLDDLIASSILSWMRDPKSAMPFPSTVEALCVKVVPFLCVVNQMPIP

TYK15967.1 hypothetical protein E5676_scaffold94G00870 [Cucumis melo var. makuwa]3.1e-2946.01Show/hide
Query:  ISGKTVSFNAEAINNLYDLPNN-AETPGHEYVVSPIKKMAREALEAIVWPGAAWEIMPTGKYQLYPHQLTTETSVWLFFIKKKIFRMRHDSTINLESAML
        +  + V F  E IN LYDLPN+    PG   +V   +  A++ ++ IVWP A     PT + QL+PHQLT E +VWLFFIKKKIF   HDSTI  E A++
Subjt:  ISGKTVSFNAEAINNLYDLPNN-AETPGHEYVVSPIKKMAREALEAIVWPGAAWEIMPTGKYQLYPHQLTTETSVWLFFIKKKIFRMRHDSTINLESAML

Query:  LYCIMNKWRVNLDDLIASSILSWMRDPKSAMPFPSTVEALCVKVV-PFLCVVNQMPIPGGLCS
        LYCI  K   NL  ++  + LSWMR+PK+A PFP+TV+ LC+K +      + Q+ + GG C+
Subjt:  LYCIMNKWRVNLDDLIASSILSWMRDPKSAMPFPSTVEALCVKVV-PFLCVVNQMPIPGGLCS

TrEMBL top hitse value%identityAlignment
A0A5A7U806 Transposase1.5e-2946.01Show/hide
Query:  ISGKTVSFNAEAINNLYDLPNN-AETPGHEYVVSPIKKMAREALEAIVWPGAAWEIMPTGKYQLYPHQLTTETSVWLFFIKKKIFRMRHDSTINLESAML
        +  + V F  E IN LYDLPN+    PG   +V   +  A++ ++ IVWP A     PT + QL+PHQLT E +VWLFFIKKKIF   HDSTI  E A++
Subjt:  ISGKTVSFNAEAINNLYDLPNN-AETPGHEYVVSPIKKMAREALEAIVWPGAAWEIMPTGKYQLYPHQLTTETSVWLFFIKKKIFRMRHDSTINLESAML

Query:  LYCIMNKWRVNLDDLIASSILSWMRDPKSAMPFPSTVEALCVKVV-PFLCVVNQMPIPGGLCS
        LYCI  K   NL  ++  + LSWMR+PK+A PFP+TV+ LC+K +      + Q+ + GG C+
Subjt:  LYCIMNKWRVNLDDLIASSILSWMRDPKSAMPFPSTVEALCVKVV-PFLCVVNQMPIPGGLCS

A0A5A7V6M5 Gag/pol protein1.1e-3546.51Show/hide
Query:  EFYATKLNVEEFSVEISGKTVSFNAEAINNLYDLPNNAETPGHEYVVSPIKKMAREALEAIVWPGAAWEIMPTG-KYQLYPHQLTTETSVWLFFIKKKIF
        +FY  K N  +  + I  +   FN E IN LY+ PN+AE  G E V    K +A+EAL+ + WPG   E+ P   +YQLYPH LTT+ +VW+FF K KIF
Subjt:  EFYATKLNVEEFSVEISGKTVSFNAEAINNLYDLPNNAETPGHEYVVSPIKKMAREALEAIVWPGAAWEIMPTG-KYQLYPHQLTTETSVWLFFIKKKIF

Query:  RMRHDSTINLESAMLLYCIMNKWRVNLDDLIASSILSWMRDPKSAMPFPSTVEALCVKVVPFLCVVNQMPIP
           +DSTI+++  ++LYCIM K  +NLD++I ++IL+WM  PK AMPFPS +E LC+K +P L    +  IP
Subjt:  RMRHDSTINLESAMLLYCIMNKWRVNLDDLIASSILSWMRDPKSAMPFPSTVEALCVKVVPFLCVVNQMPIP

A0A5D3CVL7 Uncharacterized protein1.5e-2946.01Show/hide
Query:  ISGKTVSFNAEAINNLYDLPNN-AETPGHEYVVSPIKKMAREALEAIVWPGAAWEIMPTGKYQLYPHQLTTETSVWLFFIKKKIFRMRHDSTINLESAML
        +  + V F  E IN LYDLPN+    PG   +V   +  A++ ++ IVWP A     PT + QL+PHQLT E +VWLFFIKKKIF   HDSTI  E A++
Subjt:  ISGKTVSFNAEAINNLYDLPNN-AETPGHEYVVSPIKKMAREALEAIVWPGAAWEIMPTGKYQLYPHQLTTETSVWLFFIKKKIFRMRHDSTINLESAML

Query:  LYCIMNKWRVNLDDLIASSILSWMRDPKSAMPFPSTVEALCVKVV-PFLCVVNQMPIPGGLCS
        LYCI  K   NL  ++  + LSWMR+PK+A PFP+TV+ LC+K +      + Q+ + GG C+
Subjt:  LYCIMNKWRVNLDDLIASSILSWMRDPKSAMPFPSTVEALCVKVV-PFLCVVNQMPIPGGLCS

A0A5D3CW17 Uncharacterized protein4.7e-3141.4Show/hide
Query:  FYATKLNVEEFSVEISGKTVSFNAEAINNLYDLPNNAETPGHEYVVSPIKKMAREALEAIVWPGAAWEIMPTGKYQLYPHQLTTETSVWLFFIKKKIFRM
        FY   +N+EE   E+  K V F  +AIN LY L NN    GH    +P  +  ++ALE I+WPG  W+ MPT KYQL+P+ L TE SVWL FIKK I   
Subjt:  FYATKLNVEEFSVEISGKTVSFNAEAINNLYDLPNNAETPGHEYVVSPIKKMAREALEAIVWPGAAWEIMPTGKYQLYPHQLTTETSVWLFFIKKKIFRM

Query:  RHDSTINLESAMLLYCIMNKWRVNLDDLIASSILSWMRDPKSAMPFPSTVEALCVKVVPFLCVVNQMPIPGGLCSPVALNRMITFH
        RHDSTI++E  MLLY   N      +++    +++W++ P  A PF    + L +K  P L    Q+ +  G+C    L+R IT H
Subjt:  RHDSTINLESAMLLYCIMNKWRVNLDDLIASSILSWMRDPKSAMPFPSTVEALCVKVVPFLCVVNQMPIPGGLCSPVALNRMITFH

A0A5D3D7L3 Uncharacterized protein2.0e-2641.38Show/hide
Query:  ISGKTVSFNAEAINNLYDLPNNAETPGHEYVVSPIKKMAREALEAIVWPGAAWEIMPTGKYQLYPHQLTTETSVWLFFIKKKIFRMRHDSTINLESAMLL
        + GK V F  +AIN L+ L   A+   H    +P ++   +AL+ + WP   W+IMPTGKYQL+   L TE  +WL F+K  I   RHDSTI++E  ML+
Subjt:  ISGKTVSFNAEAINNLYDLPNNAETPGHEYVVSPIKKMAREALEAIVWPGAAWEIMPTGKYQLYPHQLTTETSVWLFFIKKKIFRMRHDSTINLESAMLL

Query:  YCIMNKWRVNLDDLIASSILSWMRDPKSAMPFPSTVEALCVKVVP
        YCIM    VN+ ++I+  I++W++ P+   PF   +E LC+K  P
Subjt:  YCIMNKWRVNLDDLIASSILSWMRDPKSAMPFPSTVEALCVKVVP

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAGAAGTTTTTCAAAGGGCACACCAAGCTGAGGATGGGTGTGGTAAAGAATTCTACGCCACTAAACTGAATGTTGAAGAGTTTAGTGTAGAAATTAGTGGGAAGAC
GGTGAGCTTCAACGCAGAGGCCATCAACAACCTATATGACCTGCCCAATAATGCTGAAACACCTGGACATGAGTATGTGGTCAGCCCAATAAAGAAAATGGCCCGTGAAG
CGTTGGAGGCCATCGTCTGGCCTGGGGCAGCATGGGAGATTATGCCGACTGGGAAATATCAGCTCTACCCACACCAATTAACCACAGAAACAAGTGTATGGTTATTCTTC
ATCAAAAAAAAGATATTTCGCATGCGCCATGACAGTACCATTAATTTAGAGTCTGCGATGCTACTCTACTGCATAATGAATAAATGGCGCGTAAATCTTGACGATTTGAT
AGCTTCATCCATCCTTTCTTGGATGCGAGATCCTAAGAGCGCCATGCCCTTCCCATCAACTGTGGAGGCACTTTGCGTAAAGGTCGTTCCCTTTCTATGCGTCGTCAATC
AAATGCCAATTCCAGGTGGCCTATGTAGCCCCGTGGCTTTGAATCGCATGATTACTTTCCACACCTATGAAGAAGTGGAAAGGCGGTCAAAGACACAGGGCCAAGACATA
GCAAAAGAAGGTGCGACCCAAGCAGACCCCCGCAAACAAAAAGCCCCCAGCACCGCATCAACCCCTCAACCAAAATAA
mRNA sequenceShow/hide mRNA sequence
ATGGAAGAAGTTTTTCAAAGGGCACACCAAGCTGAGGATGGGTGTGGTAAAGAATTCTACGCCACTAAACTGAATGTTGAAGAGTTTAGTGTAGAAATTAGTGGGAAGAC
GGTGAGCTTCAACGCAGAGGCCATCAACAACCTATATGACCTGCCCAATAATGCTGAAACACCTGGACATGAGTATGTGGTCAGCCCAATAAAGAAAATGGCCCGTGAAG
CGTTGGAGGCCATCGTCTGGCCTGGGGCAGCATGGGAGATTATGCCGACTGGGAAATATCAGCTCTACCCACACCAATTAACCACAGAAACAAGTGTATGGTTATTCTTC
ATCAAAAAAAAGATATTTCGCATGCGCCATGACAGTACCATTAATTTAGAGTCTGCGATGCTACTCTACTGCATAATGAATAAATGGCGCGTAAATCTTGACGATTTGAT
AGCTTCATCCATCCTTTCTTGGATGCGAGATCCTAAGAGCGCCATGCCCTTCCCATCAACTGTGGAGGCACTTTGCGTAAAGGTCGTTCCCTTTCTATGCGTCGTCAATC
AAATGCCAATTCCAGGTGGCCTATGTAGCCCCGTGGCTTTGAATCGCATGATTACTTTCCACACCTATGAAGAAGTGGAAAGGCGGTCAAAGACACAGGGCCAAGACATA
GCAAAAGAAGGTGCGACCCAAGCAGACCCCCGCAAACAAAAAGCCCCCAGCACCGCATCAACCCCTCAACCAAAATAA
Protein sequenceShow/hide protein sequence
MEEVFQRAHQAEDGCGKEFYATKLNVEEFSVEISGKTVSFNAEAINNLYDLPNNAETPGHEYVVSPIKKMAREALEAIVWPGAAWEIMPTGKYQLYPHQLTTETSVWLFF
IKKKIFRMRHDSTINLESAMLLYCIMNKWRVNLDDLIASSILSWMRDPKSAMPFPSTVEALCVKVVPFLCVVNQMPIPGGLCSPVALNRMITFHTYEEVERRSKTQGQDI
AKEGATQADPRKQKAPSTASTPQPK