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PI0016697 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0016697
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionPre-mRNA-splicing factor SF2
Genome locationchr09:48057..48362
RNA-Seq ExpressionPI0016697
SyntenyPI0016697
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
GO:0003723 - RNA binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0042513.1 Pre-mRNA-splicing factor SF2 [Cucumis melo var. makuwa]2.0e-3897.53Show/hide
Query:  MSIAIIHRDIEREWEDHCGVMGIIFINGATCSLSEELCTAKFLERMRRYKFYFNIIIPLERLGANEQWNCGARLTSRIALL
        MSIAIIHRDIEREWEDHCGVMGIIFINGATCSLSEELCTAKFLERMRRYK YFNIIIPLE LGANEQWNCGARLTSRIALL
Subjt:  MSIAIIHRDIEREWEDHCGVMGIIFINGATCSLSEELCTAKFLERMRRYKFYFNIIIPLERLGANEQWNCGARLTSRIALL
KGN49818.1 hypothetical protein Csa_000599 [Cucumis sativus]1.7e-5098.02Show/hide
Query:  MTSASTNMSIAIIHRDIEREWEDHCGVMGIIFINGATCSLSEELCTAKFLERMRRYKFYFNIIIPLERLGANEQWNCGARLTSRIALLVCFIVYCSALFG
        MTSASTNMSIAIIHRDIEREWEDHCGVMGIIFINGATCSLSEELCTAKFLERMRRYK YFNIIIPLE LGANEQWNCGARLTSRIALLVCFIVYCSALFG
Subjt:  MTSASTNMSIAIIHRDIEREWEDHCGVMGIIFINGATCSLSEELCTAKFLERMRRYKFYFNIIIPLERLGANEQWNCGARLTSRIALLVCFIVYCSALFG

Query:  E
        E
Subjt:  E
PON71975.1 hypothetical protein PanWU01x14_068170, partial [Parasponia andersonii]1.2e-1455.32Show/hide
Query:  MTSASTNMSIAIIHRDIEREWEDHCGVMGIIFINGATCSLSEELCT-AKFLERMRRYKFYFNIIIPLERLGANEQWNCGARLTSRIALLVCFIV
        MTSA TNMSIA+IHRDIER+WE  CGVMG+IF+     + S+++ T AK LERMRR KF    ++    L        GA LT RIALLVCF+V
Subjt:  MTSASTNMSIAIIHRDIEREWEDHCGVMGIIFINGATCSLSEELCT-AKFLERMRRYKFYFNIIIPLERLGANEQWNCGARLTSRIALLVCFIV
PON83659.1 hypothetical protein TorRG33x02_204650, partial [Trema orientale]4.3e-1757.45Show/hide
Query:  MTSASTNMSIAIIHRDIEREWEDHCGVMGIIFINGATCSLSEELCT-AKFLERMRRYKFYFNIIIPLERLGANEQWNCGARLTSRIALLVCFIV
        M SA TNMSIA+IHRDIER+WE  CGVMG+IF+     + S+++ T AK LERMRR KF    ++    L       CGARLTSRIALLVCF+V
Subjt:  MTSASTNMSIAIIHRDIEREWEDHCGVMGIIFINGATCSLSEELCT-AKFLERMRRYKFYFNIIIPLERLGANEQWNCGARLTSRIALLVCFIV
TYK05915.1 Pre-mRNA-splicing factor SF2 [Cucumis melo var. makuwa]2.0e-3897.53Show/hide
Query:  MSIAIIHRDIEREWEDHCGVMGIIFINGATCSLSEELCTAKFLERMRRYKFYFNIIIPLERLGANEQWNCGARLTSRIALL
        MSIAIIHRDIEREWEDHCGVMGIIFINGATCSLSEELCTAKFLERMRRYK YFNIIIPLE LGANEQWNCGARLTSRIALL
Subjt:  MSIAIIHRDIEREWEDHCGVMGIIFINGATCSLSEELCTAKFLERMRRYKFYFNIIIPLERLGANEQWNCGARLTSRIALL
TrEMBL top hitse value%identityAlignment
A0A0A0KJQ0 Uncharacterized protein8.3e-5198.02Show/hide
Query:  MTSASTNMSIAIIHRDIEREWEDHCGVMGIIFINGATCSLSEELCTAKFLERMRRYKFYFNIIIPLERLGANEQWNCGARLTSRIALLVCFIVYCSALFG
        MTSASTNMSIAIIHRDIEREWEDHCGVMGIIFINGATCSLSEELCTAKFLERMRRYK YFNIIIPLE LGANEQWNCGARLTSRIALLVCFIVYCSALFG
Subjt:  MTSASTNMSIAIIHRDIEREWEDHCGVMGIIFINGATCSLSEELCTAKFLERMRRYKFYFNIIIPLERLGANEQWNCGARLTSRIALLVCFIVYCSALFG

Query:  E
        E
Subjt:  E
A0A2P5DF99 Uncharacterized protein (Fragment)5.6e-1555.32Show/hide
Query:  MTSASTNMSIAIIHRDIEREWEDHCGVMGIIFINGATCSLSEELCT-AKFLERMRRYKFYFNIIIPLERLGANEQWNCGARLTSRIALLVCFIV
        MTSA TNMSIA+IHRDIER+WE  CGVMG+IF+     + S+++ T AK LERMRR KF    ++    L        GA LT RIALLVCF+V
Subjt:  MTSASTNMSIAIIHRDIEREWEDHCGVMGIIFINGATCSLSEELCT-AKFLERMRRYKFYFNIIIPLERLGANEQWNCGARLTSRIALLVCFIV
A0A2P5EDP3 Uncharacterized protein (Fragment)2.1e-1757.45Show/hide
Query:  MTSASTNMSIAIIHRDIEREWEDHCGVMGIIFINGATCSLSEELCT-AKFLERMRRYKFYFNIIIPLERLGANEQWNCGARLTSRIALLVCFIV
        M SA TNMSIA+IHRDIER+WE  CGVMG+IF+     + S+++ T AK LERMRR KF    ++    L       CGARLTSRIALLVCF+V
Subjt:  MTSASTNMSIAIIHRDIEREWEDHCGVMGIIFINGATCSLSEELCT-AKFLERMRRYKFYFNIIIPLERLGANEQWNCGARLTSRIALLVCFIV
A0A5A7TGZ1 Pre-mRNA-splicing factor SF29.6e-3997.53Show/hide
Query:  MSIAIIHRDIEREWEDHCGVMGIIFINGATCSLSEELCTAKFLERMRRYKFYFNIIIPLERLGANEQWNCGARLTSRIALL
        MSIAIIHRDIEREWEDHCGVMGIIFINGATCSLSEELCTAKFLERMRRYK YFNIIIPLE LGANEQWNCGARLTSRIALL
Subjt:  MSIAIIHRDIEREWEDHCGVMGIIFINGATCSLSEELCTAKFLERMRRYKFYFNIIIPLERLGANEQWNCGARLTSRIALL
A0A5D3C3G3 Pre-mRNA-splicing factor SF29.6e-3997.53Show/hide
Query:  MSIAIIHRDIEREWEDHCGVMGIIFINGATCSLSEELCTAKFLERMRRYKFYFNIIIPLERLGANEQWNCGARLTSRIALL
        MSIAIIHRDIEREWEDHCGVMGIIFINGATCSLSEELCTAKFLERMRRYK YFNIIIPLE LGANEQWNCGARLTSRIALL
Subjt:  MSIAIIHRDIEREWEDHCGVMGIIFINGATCSLSEELCTAKFLERMRRYKFYFNIIIPLERLGANEQWNCGARLTSRIALL
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACAAGCGCTTCGACAAATATGAGCATTGCAATCATACATAGGGATATAGAGAGGGAATGGGAGGATCATTGTGGAGTTATGGGTATTATTTTTATAAATGGAGCTAC
TTGCTCACTCTCAGAAGAGCTATGCACTGCTAAATTTCTGGAGAGGATGAGGAGATACAAATTTTATTTCAATATTATTATACCTTTGGAGCGTCTGGGAGCAAATGAGC
AATGGAATTGTGGAGCACGGCTCACATCGAGGATTGCTCTCTTGGTTTGCTTCATTGTTTATTGTTCTGCCTTATTTGGAGAGTAA
mRNA sequenceShow/hide mRNA sequence
ATGACAAGCGCTTCGACAAATATGAGCATTGCAATCATACATAGGGATATAGAGAGGGAATGGGAGGATCATTGTGGAGTTATGGGTATTATTTTTATAAATGGAGCTAC
TTGCTCACTCTCAGAAGAGCTATGCACTGCTAAATTTCTGGAGAGGATGAGGAGATACAAATTTTATTTCAATATTATTATACCTTTGGAGCGTCTGGGAGCAAATGAGC
AATGGAATTGTGGAGCACGGCTCACATCGAGGATTGCTCTCTTGGTTTGCTTCATTGTTTATTGTTCTGCCTTATTTGGAGAGTAA
Protein sequenceShow/hide protein sequence
MTSASTNMSIAIIHRDIEREWEDHCGVMGIIFINGATCSLSEELCTAKFLERMRRYKFYFNIIIPLERLGANEQWNCGARLTSRIALLVCFIVYCSALFGE