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PI0016704 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0016704
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrotransposon protein
Genome locationchr05:10881297..10881524
RNA-Seq ExpressionPI0016704
SyntenyPI0016704
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0047716.1 retrotransposon protein [Cucumis melo var. makuwa]4.6e-1663.89Show/hide
Query:  GYDGFSAYDGSGVEFPTMYSQGLDMSPDDIMGTRPGRLSEGRAGSSGSKRKRGGQAFEAAKIIHSAIEYGND
        GY+GF+  DG+ +E PTMYSQGLDMS DDIMGT+P R S+GR  S+GSKRK+G Q  E  KII SA+EY N+
Subjt:  GYDGFSAYDGSGVEFPTMYSQGLDMSPDDIMGTRPGRLSEGRAGSSGSKRKRGGQAFEAAKIIHSAIEYGND

KAA0048374.1 retrotransposon protein [Cucumis melo var. makuwa]5.6e-1456.76Show/hide
Query:  PAGYDGFSAYDGSGVEFPTMYSQGLDMSPDDIMGTRPGRLSEGRAGSSGSKRKRGGQAFEAAKIIHSAIEYGND
        P GYD F+A   S  +F  MYS+GL+MSPD++MGTR  R+SEGR  SSGSK+KRGG   ++  I+ +AIEYGN+
Subjt:  PAGYDGFSAYDGSGVEFPTMYSQGLDMSPDDIMGTRPGRLSEGRAGSSGSKRKRGGQAFEAAKIIHSAIEYGND

KAA0056167.1 retrotransposon protein [Cucumis melo var. makuwa]1.9e-1462.5Show/hide
Query:  GYDGFSAYDGSGVEFPTMYSQGLDMSPDDIMGTRPGRLSEGRAGSSGSKRKRGGQAFEAAKIIHSAIEYGND
        GY+GF   DG+ +E P+MYSQGLDMS DDIMGTRP + S+GR  SS SKRK  GQ  E  KII+++IEY ND
Subjt:  GYDGFSAYDGSGVEFPTMYSQGLDMSPDDIMGTRPGRLSEGRAGSSGSKRKRGGQAFEAAKIIHSAIEYGND

KAA0060529.1 retrotransposon protein [Cucumis melo var. makuwa]1.9e-1764.86Show/hide
Query:  PAGYDGFSAYDGSGVEFPTMYSQGLDMSPDDIMGTRPGRLSEGRAGSSGSKRKRGGQAFEAAKIIHSAIEYGND
        P GY+GFSA DG+ +E P MYSQG+DM  DDIMGTRP R +EGR GSSGSKRK+GGQA E  +II + +E+ ND
Subjt:  PAGYDGFSAYDGSGVEFPTMYSQGLDMSPDDIMGTRPGRLSEGRAGSSGSKRKRGGQAFEAAKIIHSAIEYGND

TYK08370.1 retrotransposon protein [Cucumis melo var. makuwa]3.5e-1663.01Show/hide
Query:  AGYDGFSAYDGSGVEFPTMYSQGLDMSPDDIMGTRPGRLSEGRAGSSGSKRKRGGQAFEAAKIIHSAIEYGND
        +GY+GF+  DG+ +E PTMYSQGLDMS DDIMGT+P R S+GR  S+GSKRK+G Q  E  KII SA+EY N+
Subjt:  AGYDGFSAYDGSGVEFPTMYSQGLDMSPDDIMGTRPGRLSEGRAGSSGSKRKRGGQAFEAAKIIHSAIEYGND

TrEMBL top hitse value%identityAlignment
A0A5A7TZA5 Retrotransposon protein2.7e-1456.76Show/hide
Query:  PAGYDGFSAYDGSGVEFPTMYSQGLDMSPDDIMGTRPGRLSEGRAGSSGSKRKRGGQAFEAAKIIHSAIEYGND
        P GYD F+A   S  +F  MYS+GL+MSPD++MGTR  R+SEGR  SSGSK+KRGG   ++  I+ +AIEYGN+
Subjt:  PAGYDGFSAYDGSGVEFPTMYSQGLDMSPDDIMGTRPGRLSEGRAGSSGSKRKRGGQAFEAAKIIHSAIEYGND

A0A5A7U0G0 Retrotransposon protein2.2e-1663.89Show/hide
Query:  GYDGFSAYDGSGVEFPTMYSQGLDMSPDDIMGTRPGRLSEGRAGSSGSKRKRGGQAFEAAKIIHSAIEYGND
        GY+GF+  DG+ +E PTMYSQGLDMS DDIMGT+P R S+GR  S+GSKRK+G Q  E  KII SA+EY N+
Subjt:  GYDGFSAYDGSGVEFPTMYSQGLDMSPDDIMGTRPGRLSEGRAGSSGSKRKRGGQAFEAAKIIHSAIEYGND

A0A5A7UNI7 Retrotransposon protein9.3e-1562.5Show/hide
Query:  GYDGFSAYDGSGVEFPTMYSQGLDMSPDDIMGTRPGRLSEGRAGSSGSKRKRGGQAFEAAKIIHSAIEYGND
        GY+GF   DG+ +E P+MYSQGLDMS DDIMGTRP + S+GR  SS SKRK  GQ  E  KII+++IEY ND
Subjt:  GYDGFSAYDGSGVEFPTMYSQGLDMSPDDIMGTRPGRLSEGRAGSSGSKRKRGGQAFEAAKIIHSAIEYGND

A0A5A7V469 Retrotransposon protein9.0e-1864.86Show/hide
Query:  PAGYDGFSAYDGSGVEFPTMYSQGLDMSPDDIMGTRPGRLSEGRAGSSGSKRKRGGQAFEAAKIIHSAIEYGND
        P GY+GFSA DG+ +E P MYSQG+DM  DDIMGTRP R +EGR GSSGSKRK+GGQA E  +II + +E+ ND
Subjt:  PAGYDGFSAYDGSGVEFPTMYSQGLDMSPDDIMGTRPGRLSEGRAGSSGSKRKRGGQAFEAAKIIHSAIEYGND

A0A5D3CAJ4 Retrotransposon protein1.7e-1663.01Show/hide
Query:  AGYDGFSAYDGSGVEFPTMYSQGLDMSPDDIMGTRPGRLSEGRAGSSGSKRKRGGQAFEAAKIIHSAIEYGND
        +GY+GF+  DG+ +E PTMYSQGLDMS DDIMGT+P R S+GR  S+GSKRK+G Q  E  KII SA+EY N+
Subjt:  AGYDGFSAYDGSGVEFPTMYSQGLDMSPDDIMGTRPGRLSEGRAGSSGSKRKRGGQAFEAAKIIHSAIEYGND

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCTGCAGGATATGATGGATTTTCTGCTTACGACGGGAGCGGTGTGGAGTTTCCCACAATGTACAGTCAGGGACTAGACATGTCACCTGACGACATAATGGGCACACG
ACCCGGTCGGTTGTCTGAGGGTAGAGCAGGTTCGAGCGGTTCAAAGAGGAAACGGGGAGGGCAGGCGTTCGAGGCGGCAAAAATTATTCACAGTGCCATAGAATATGGGA
ACGACTAG
mRNA sequenceShow/hide mRNA sequence
ATGCCTGCAGGATATGATGGATTTTCTGCTTACGACGGGAGCGGTGTGGAGTTTCCCACAATGTACAGTCAGGGACTAGACATGTCACCTGACGACATAATGGGCACACG
ACCCGGTCGGTTGTCTGAGGGTAGAGCAGGTTCGAGCGGTTCAAAGAGGAAACGGGGAGGGCAGGCGTTCGAGGCGGCAAAAATTATTCACAGTGCCATAGAATATGGGA
ACGACTAG
Protein sequenceShow/hide protein sequence
MPAGYDGFSAYDGSGVEFPTMYSQGLDMSPDDIMGTRPGRLSEGRAGSSGSKRKRGGQAFEAAKIIHSAIEYGND