; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

PI0016807 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0016807
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionU6 snRNA-associated Sm-like protein LSm5
Genome locationchr04:7923195..7931034
RNA-Seq ExpressionPI0016807
SyntenyPI0016807
Gene Ontology termsGO:0000398 - mRNA splicing, via spliceosome (biological process)
GO:0009414 - response to water deprivation (biological process)
GO:0009737 - response to abscisic acid (biological process)
GO:0005681 - spliceosomal complex (cellular component)
GO:0005688 - U6 snRNP (cellular component)
GO:0046540 - U4/U6 x U5 tri-snRNP complex (cellular component)
GO:0120115 - Lsm2-8 complex (cellular component)
GO:1990726 - Lsm1-7-Pat1 complex (cellular component)
GO:0003723 - RNA binding (molecular function)
InterPro domainsIPR001163 - LSM domain, eukaryotic/archaea-type
IPR010920 - LSM domain superfamily
IPR033871 - Sm-like protein LSm5


Homology Show/hide homology
GenBank top hitse value%identityAlignment
ADR71256.1 U6 snRNA-associated Sm-like protein LSm5 [Hevea brasiliensis]1.3e-4198.85Show/hide
Query:  MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAILVPGGSPDPE
        MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYE+TAEGRRITKLDQILLNGNNIAILVPGGSPDPE
Subjt:  MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAILVPGGSPDPE

KAA8550650.1 hypothetical protein F0562_002334 [Nyssa sinensis]1.3e-4198.85Show/hide
Query:  MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAILVPGGSPDPE
        MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIA+LVPGGSPDPE
Subjt:  MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAILVPGGSPDPE

KAG7036265.1 Sm-like protein LSM5, partial [Cucurbita argyrosperma subsp. argyrosperma]9.6e-42100Show/hide
Query:  MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAILVPGGSPDPE
        MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAILVPGGSPDPE
Subjt:  MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAILVPGGSPDPE

XP_004504703.1 sm-like protein LSM5 [Cicer arietinum]9.6e-42100Show/hide
Query:  MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAILVPGGSPDPE
        MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAILVPGGSPDPE
Subjt:  MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAILVPGGSPDPE

XP_021659196.1 sm-like protein LSM5 [Hevea brasiliensis]1.3e-4198.85Show/hide
Query:  MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAILVPGGSPDPE
        MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYE+TAEGRRITKLDQILLNGNNIAILVPGGSPDPE
Subjt:  MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAILVPGGSPDPE

TrEMBL top hitse value%identityAlignment
A0A0B0NQ45 U6 snRNA-associated Sm-like protein LSm54.7e-42100Show/hide
Query:  MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAILVPGGSPDPE
        MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAILVPGGSPDPE
Subjt:  MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAILVPGGSPDPE

A0A2P5WT65 U6 snRNA-associated Sm-like protein LSm54.7e-42100Show/hide
Query:  MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAILVPGGSPDPE
        MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAILVPGGSPDPE
Subjt:  MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAILVPGGSPDPE

A0A6A3A5D5 U6 snRNA-associated Sm-like protein LSm54.7e-42100Show/hide
Query:  MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAILVPGGSPDPE
        MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAILVPGGSPDPE
Subjt:  MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAILVPGGSPDPE

A0A7N2MJM1 U6 snRNA-associated Sm-like protein LSm54.7e-42100Show/hide
Query:  MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAILVPGGSPDPE
        MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAILVPGGSPDPE
Subjt:  MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAILVPGGSPDPE

I3SAC1 U6 snRNA-associated Sm-like protein LSm54.7e-42100Show/hide
Query:  MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAILVPGGSPDPE
        MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAILVPGGSPDPE
Subjt:  MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAILVPGGSPDPE

SwissProt top hitse value%identityAlignment
P62322 U6 snRNA-associated Sm-like protein LSm52.7e-3179.75Show/hide
Query:  NPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAILVPGG
        NPSQLLP EL+D+CIGS+I ++MK DKE+VGTL GFD +VNMVLEDVTE+EIT EGRRITKLDQILLNGNNI +LVPGG
Subjt:  NPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAILVPGG

Q2HJH0 U6 snRNA-associated Sm-like protein LSm52.7e-3179.75Show/hide
Query:  NPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAILVPGG
        NPSQLLP EL+D+CIGS+I ++MK DKE+VGTL GFD +VNMVLEDVTE+EIT EGRRITKLDQILLNGNNI +LVPGG
Subjt:  NPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAILVPGG

Q5R628 U6 snRNA-associated Sm-like protein LSm52.7e-3179.75Show/hide
Query:  NPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAILVPGG
        NPSQLLP EL+D+CIGS+I ++MK DKE+VGTL GFD +VNMVLEDVTE+EIT EGRRITKLDQILLNGNNI +LVPGG
Subjt:  NPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAILVPGG

Q9FKB0 Sm-like protein LSM51.3e-4195.29Show/hide
Query:  MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAILVPGGSPD
        MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVG L+GFDVYVNMVLEDVTEYEITAEGRR+TKLDQILLNGNNIAILVPGGSP+
Subjt:  MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAILVPGGSPD

Q9Y4Y9 U6 snRNA-associated Sm-like protein LSm52.7e-3179.75Show/hide
Query:  NPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAILVPGG
        NPSQLLP EL+D+CIGS+I ++MK DKE+VGTL GFD +VNMVLEDVTE+EIT EGRRITKLDQILLNGNNI +LVPGG
Subjt:  NPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAILVPGG

Arabidopsis top hitse value%identityAlignment
AT2G18740.1 Small nuclear ribonucleoprotein family protein1.8e-0636.36Show/hide
Query:  PSELIDRCIGSK----IWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAILVPGG
        P  LI R + SK    IW+  + D  + G + GFD Y+N+VL++  E  I    R+   L +ILL G+NI +++  G
Subjt:  PSELIDRCIGSK----IWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAILVPGG

AT3G14080.1 Small nuclear ribonucleoprotein family protein1.0e-0428.38Show/hide
Query:  PSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAIL
        P ++  S  +   +  K+ V+++  ++L+GTLR FD + N VLE   E  I  E      L   ++ G N+ ++
Subjt:  PSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAIL

AT3G14080.2 Small nuclear ribonucleoprotein family protein1.0e-0428.38Show/hide
Query:  PSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAIL
        P ++  S  +   +  K+ V+++  ++L+GTLR FD + N VLE   E  I  E      L   ++ G N+ ++
Subjt:  PSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAIL

AT4G30330.1 Small nuclear ribonucleoprotein family protein8.2e-0736.36Show/hide
Query:  PSELIDRCIGSK----IWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAILVPGG
        P  LI R + SK    IW+  + D  + G + GFD Y+N+VL++  E  I  + R+   L +ILL G+NI +++  G
Subjt:  PSELIDRCIGSK----IWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAILVPGG

AT5G48870.1 Small nuclear ribonucleoprotein family protein9.3e-4395.29Show/hide
Query:  MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAILVPGGSPD
        MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVG L+GFDVYVNMVLEDVTEYEITAEGRR+TKLDQILLNGNNIAILVPGGSP+
Subjt:  MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAILVPGGSPD


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTAACAATCCTTCACAGTTACTACCGTCGGAGTTAATCGACCGATGTATTGGGTCTAAAATATGGGTAATTATGAAGGGCGACAAAGAGCTTGTTGGCACTCTCAG
AGGATTTGATGTTTATGTCAACATGGTTCTTGAAGATGTTACTGAATATGAGATCACTGCTGAGGGGAGGCGGATAACAAAGCTGGATCAGATTCTACTCAATGGGAACA
ACATTGCTATTCTCGTTCCCGGTGGATCACCTGACCCAGAATAG
mRNA sequenceShow/hide mRNA sequence
CGCCGTTTTGGACAATTATACAAACGAAAAATGGTTTCGTTTCGTTGGATGAGTCGTCGAAGGGAATAAGCCACGCGCCTCTTGCACTTCACTGCCTTCGCAGATTCAAC
TCGCCGGCCCTTTCTTCATTCATTCGCTCTCATTCCCAGTAAAAAGCAAATTCATGGCTAACAATCCTTCACAGTTACTACCGTCGGAGTTAATCGACCGATGTATTGGG
TCTAAAATATGGGTAATTATGAAGGGCGACAAAGAGCTTGTTGGCACTCTCAGAGGATTTGATGTTTATGTCAACATGGTTCTTGAAGATGTTACTGAATATGAGATCAC
TGCTGAGGGGAGGCGGATAACAAAGCTGGATCAGATTCTACTCAATGGGAACAACATTGCTATTCTCGTTCCCGGTGGATCACCTGACCCAGAATAGGCATGGAATATGG
ATAGCATGTGGTTTTGGCCGGCAATCTTTTGCATCATTGTTATGAGTTGCCTCCTTGCACCCAACATTTTCTTATCTCTTGATATAGAATGACTCAGGCGACAAATTTCA
TGTATTTGATTGAAGTAAAGCGTTTTAGTTTCTTTGATATAAATCAGTGTTAGATTCCTTCATGTTGACTGCTTCCAATAGAAATATATTGGCTTAATTGTGAAGTGAAT
TTGACTGTTTTCAATGGATTCACTTATTCTAAACCTAGATTTAAAATAGAGCTAGAGCTGTATTGATTCTAAACTAAATACTTATCTTGTAAGAAATGGAGCCATATTGA
TGACCGAGCCAACCCATAAGAAGTAAGTTTGGTTTGGTTAGCAATTTGATGCCAAACCAAACAAATATTATTA
Protein sequenceShow/hide protein sequence
MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAILVPGGSPDPE