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PI0016905 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0016905
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrotransposon protein
Genome locationchr02:19010660..19011775
RNA-Seq ExpressionPI0016905
SyntenyPI0016905
Gene Ontology termsGO:0046872 - metal ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0031678.1 retrotransposon protein [Cucumis melo var. makuwa]1.0e-3066.67Show/hide
Query:  YYDDLSYVFGKDRTTGARSKTFADVGSNVSNNFNDGVPVGDLHDEDIPTMYSQGVDMSPDEMLRTRADRSSEGRNCSSGSKRKRCGQHYETIEVTRNAMK
        YYDDLSYVFG D  TGA S+TFAD GSNVSN FNDGVP+GD H++DI T+YSQGV MS DE+   RA ++SE RN SSGSKRKR  +HYE +EV  +A +
Subjt:  YYDDLSYVFGKDRTTGARSKTFADVGSNVSNNFNDGVPVGDLHDEDIPTMYSQGVDMSPDEMLRTRADRSSEGRNCSSGSKRKRCGQHYETIEVTRNAMK

Query:  FTNDQLKAIAD
        F NDQLK I D
Subjt:  FTNDQLKAIAD

KAA0033290.1 putative nuclease HARBI1 [Cucumis melo var. makuwa]3.6e-3960.13Show/hide
Query:  GGDKINYIETSNEWSQLADMMFNDWELQSSCNQKTSTQIISIYYDDLSYVFGKDRTTGARSKTFADVGSNVSNNFNDGVPVGDLHDEDIPTMYSQGVDMS
        GGD+INYIE SN WS+  D +     L  S            YYDDL YVFGKDR T ARS+TFADVGSNV N FN  VP+ D HD+DIP MYSQGV MS
Subjt:  GGDKINYIETSNEWSQLADMMFNDWELQSSCNQKTSTQIISIYYDDLSYVFGKDRTTGARSKTFADVGSNVSNNFNDGVPVGDLHDEDIPTMYSQGVDMS

Query:  PDEMLRTRADRSSEGRNCSSGSKRKRCGQHYETIEVTRNAMKFTNDQLKAIAD
        PDEM   RA ++SE +NCSSGSKRK+  +HYET+EV ++A++F NDQLKAIA+
Subjt:  PDEMLRTRADRSSEGRNCSSGSKRKRCGQHYETIEVTRNAMKFTNDQLKAIAD

KAA0042340.1 retrotransposon protein [Cucumis melo var. makuwa]1.5e-3768.22Show/hide
Query:  WELQSSCNQKTSTQIISIYYDDLSYVFGKDRTTGARSKTFADVGSNVSNNFNDGVPVGDLHDEDIPTMYSQGVDMSPDEMLRTRADRSSEGRNCSSGSKR
        W L+S    K        YYDD+SYVFGKD+ T ARS+TFADVGSN+ N FNDGVP+GD H EDIPTMYSQGV MS DEM  TRA ++SE RNCSS SKR
Subjt:  WELQSSCNQKTSTQIISIYYDDLSYVFGKDRTTGARSKTFADVGSNVSNNFNDGVPVGDLHDEDIPTMYSQGVDMSPDEMLRTRADRSSEGRNCSSGSKR

Query:  KRCGQHYETIEVTRNAMKFTNDQLKAIAD
        K+  QHYET+EV R+AMKF NDQLKAIAD
Subjt:  KRCGQHYETIEVTRNAMKFTNDQLKAIAD

KAA0056515.1 putative nuclease HARBI1 [Cucumis melo var. makuwa]3.4e-3470.27Show/hide
Query:  YYDDLSYVFGKDRTTGARSKTFADVGSNVSNNFNDGVPVGDLHDEDIPTMYSQGVDMSPDEMLRTRADRSSEGRNCSSGSKRKRCGQHYETIEVTRNAMK
        YYDDLSYVFGKDR T  RS+TF+ VGSNV N FNDGVP+GD H++DIP MYSQGV MS DEM   RA ++SE RNCSSGSKRKR  +HYE +EV R+ MK
Subjt:  YYDDLSYVFGKDRTTGARSKTFADVGSNVSNNFNDGVPVGDLHDEDIPTMYSQGVDMSPDEMLRTRADRSSEGRNCSSGSKRKRCGQHYETIEVTRNAMK

Query:  FTNDQLKAIAD
        F N+QLK IAD
Subjt:  FTNDQLKAIAD

XP_008441954.1 PREDICTED: uncharacterized protein LOC103485953 [Cucumis melo]5.7e-3773.87Show/hide
Query:  YYDDLSYVFGKDRTTGARSKTFADVGSNVSNNFNDGVPVGDLHDEDIPTMYSQGVDMSPDEMLRTRADRSSEGRNCSSGSKRKRCGQHYETIEVTRNAMK
        YYDDLSYVFGKDR TGARS+TF +VGSNVSN FND +P+GD HDEDIPTMYSQGV MSPDEM   RA ++SE RNCSS SKRKR  + YET+EV R+ M+
Subjt:  YYDDLSYVFGKDRTTGARSKTFADVGSNVSNNFNDGVPVGDLHDEDIPTMYSQGVDMSPDEMLRTRADRSSEGRNCSSGSKRKRCGQHYETIEVTRNAMK

Query:  FTNDQLKAIAD
        F N+QLKAIAD
Subjt:  FTNDQLKAIAD

TrEMBL top hitse value%identityAlignment
A0A1S3B4L3 uncharacterized protein LOC1034859532.7e-3773.87Show/hide
Query:  YYDDLSYVFGKDRTTGARSKTFADVGSNVSNNFNDGVPVGDLHDEDIPTMYSQGVDMSPDEMLRTRADRSSEGRNCSSGSKRKRCGQHYETIEVTRNAMK
        YYDDLSYVFGKDR TGARS+TF +VGSNVSN FND +P+GD HDEDIPTMYSQGV MSPDEM   RA ++SE RNCSS SKRKR  + YET+EV R+ M+
Subjt:  YYDDLSYVFGKDRTTGARSKTFADVGSNVSNNFNDGVPVGDLHDEDIPTMYSQGVDMSPDEMLRTRADRSSEGRNCSSGSKRKRCGQHYETIEVTRNAMK

Query:  FTNDQLKAIAD
        F N+QLKAIAD
Subjt:  FTNDQLKAIAD

A0A5A7SQU2 Putative nuclease HARBI11.7e-3960.13Show/hide
Query:  GGDKINYIETSNEWSQLADMMFNDWELQSSCNQKTSTQIISIYYDDLSYVFGKDRTTGARSKTFADVGSNVSNNFNDGVPVGDLHDEDIPTMYSQGVDMS
        GGD+INYIE SN WS+  D +     L  S            YYDDL YVFGKDR T ARS+TFADVGSNV N FN  VP+ D HD+DIP MYSQGV MS
Subjt:  GGDKINYIETSNEWSQLADMMFNDWELQSSCNQKTSTQIISIYYDDLSYVFGKDRTTGARSKTFADVGSNVSNNFNDGVPVGDLHDEDIPTMYSQGVDMS

Query:  PDEMLRTRADRSSEGRNCSSGSKRKRCGQHYETIEVTRNAMKFTNDQLKAIAD
        PDEM   RA ++SE +NCSSGSKRK+  +HYET+EV ++A++F NDQLKAIA+
Subjt:  PDEMLRTRADRSSEGRNCSSGSKRKRCGQHYETIEVTRNAMKFTNDQLKAIAD

A0A5A7U0H7 Retrotransposon protein2.7e-3773.87Show/hide
Query:  YYDDLSYVFGKDRTTGARSKTFADVGSNVSNNFNDGVPVGDLHDEDIPTMYSQGVDMSPDEMLRTRADRSSEGRNCSSGSKRKRCGQHYETIEVTRNAMK
        YYDDLSYVFGKDR TGARS+TF +VGSNVSN FND +P+GD HDEDIPTMYSQGV MSPDEM   RA ++SE RNCSS SKRKR  + YET+EV R+ M+
Subjt:  YYDDLSYVFGKDRTTGARSKTFADVGSNVSNNFNDGVPVGDLHDEDIPTMYSQGVDMSPDEMLRTRADRSSEGRNCSSGSKRKRCGQHYETIEVTRNAMK

Query:  FTNDQLKAIAD
        F N+QLKAIAD
Subjt:  FTNDQLKAIAD

A0A5A7USN6 Putative nuclease HARBI11.7e-3470.27Show/hide
Query:  YYDDLSYVFGKDRTTGARSKTFADVGSNVSNNFNDGVPVGDLHDEDIPTMYSQGVDMSPDEMLRTRADRSSEGRNCSSGSKRKRCGQHYETIEVTRNAMK
        YYDDLSYVFGKDR T  RS+TF+ VGSNV N FNDGVP+GD H++DIP MYSQGV MS DEM   RA ++SE RNCSSGSKRKR  +HYE +EV R+ MK
Subjt:  YYDDLSYVFGKDRTTGARSKTFADVGSNVSNNFNDGVPVGDLHDEDIPTMYSQGVDMSPDEMLRTRADRSSEGRNCSSGSKRKRCGQHYETIEVTRNAMK

Query:  FTNDQLKAIAD
        F N+QLK IAD
Subjt:  FTNDQLKAIAD

A0A5D3CVB7 Retrotransposon protein7.2e-3868.22Show/hide
Query:  WELQSSCNQKTSTQIISIYYDDLSYVFGKDRTTGARSKTFADVGSNVSNNFNDGVPVGDLHDEDIPTMYSQGVDMSPDEMLRTRADRSSEGRNCSSGSKR
        W L+S    K        YYDD+SYVFGKD+ T ARS+TFADVGSN+ N FNDGVP+GD H EDIPTMYSQGV MS DEM  TRA ++SE RNCSS SKR
Subjt:  WELQSSCNQKTSTQIISIYYDDLSYVFGKDRTTGARSKTFADVGSNVSNNFNDGVPVGDLHDEDIPTMYSQGVDMSPDEMLRTRADRSSEGRNCSSGSKR

Query:  KRCGQHYETIEVTRNAMKFTNDQLKAIAD
        K+  QHYET+EV R+AMKF NDQLKAIAD
Subjt:  KRCGQHYETIEVTRNAMKFTNDQLKAIAD

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGAGGTGACAAGATTAATTACATTGAGACTTCAAACGAATGGAGTCAATTGGCTGATATGATGTTCAATGATTGGGAGTTACAGTCATCCTGCAACCAAAAGACTTC
TACACAAATCATTTCCATATATTATGATGATCTGTCCTATGTCTTCGGTAAAGATCGGACAACAGGAGCACGTTCAAAGACCTTTGCTGATGTGGGATCTAATGTGTCAA
ACAATTTTAATGACGGTGTTCCCGTTGGTGATTTACATGATGAAGACATTCCGACGATGTATAGCCAAGGAGTGGATATGTCACCAGATGAGATGTTGAGAACACGTGCA
GATCGATCAAGTGAAGGAAGAAATTGTTCAAGTGGAAGTAAGAGGAAACGATGTGGCCAACATTATGAAACGATAGAGGTGACCAGGAATGCAATGAAATTTACAAACGA
TCAATTAAAGGCAATTGCAGATTGA
mRNA sequenceShow/hide mRNA sequence
ATGGGAGGTGACAAGATTAATTACATTGAGACTTCAAACGAATGGAGTCAATTGGCTGATATGATGTTCAATGATTGGGAGTTACAGTCATCCTGCAACCAAAAGACTTC
TACACAAATCATTTCCATATATTATGATGATCTGTCCTATGTCTTCGGTAAAGATCGGACAACAGGAGCACGTTCAAAGACCTTTGCTGATGTGGGATCTAATGTGTCAA
ACAATTTTAATGACGGTGTTCCCGTTGGTGATTTACATGATGAAGACATTCCGACGATGTATAGCCAAGGAGTGGATATGTCACCAGATGAGATGTTGAGAACACGTGCA
GATCGATCAAGTGAAGGAAGAAATTGTTCAAGTGGAAGTAAGAGGAAACGATGTGGCCAACATTATGAAACGATAGAGGTGACCAGGAATGCAATGAAATTTACAAACGA
TCAATTAAAGGCAATTGCAGATTGA
Protein sequenceShow/hide protein sequence
MGGDKINYIETSNEWSQLADMMFNDWELQSSCNQKTSTQIISIYYDDLSYVFGKDRTTGARSKTFADVGSNVSNNFNDGVPVGDLHDEDIPTMYSQGVDMSPDEMLRTRA
DRSSEGRNCSSGSKRKRCGQHYETIEVTRNAMKFTNDQLKAIAD