; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

PI0016908 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0016908
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRibonuclease H
Genome locationchr06:11374006..11375327
RNA-Seq ExpressionPI0016908
SyntenyPI0016908
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic (biological process)
GO:0030430 - host cell cytoplasm (cellular component)
GO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0051588.1 uncharacterized protein E6C27_scaffold174G001310 [Cucumis melo var. makuwa]5.9e-6579.88Show/hide
Query:  MLPYSFALAELCSNNVAEYQALIIDLQIVLEIKVSLIEIYGDSKLIISQLLLQYDVKHEDLKSYFTYARQWMERFDSVMLEHVPRVENKRAYKLANLATA
        MLPYSFALAELCSNNVAEYQALII LQ+ LEI+VS IEIYGDSKLII+QL LQYDVKHEDLK YFTYARQ MERFDSVMLEHVPR ENKRA  LANLATA
Subjt:  MLPYSFALAELCSNNVAEYQALIIDLQIVLEIKVSLIEIYGDSKLIISQLLLQYDVKHEDLKSYFTYARQWMERFDSVMLEHVPRVENKRAYKLANLATA

Query:  LTMVDDGILNISLCQRWIMPPIVSKCEEINMTTVHLIAEEDWCQSIIEYLEHGKLPKDSHHKTE
        L M D+  LNI LCQ+WIMPP++ +C+E N+TT HLI EEDW Q IIEYL+HGKL KDS HKTE
Subjt:  LTMVDDGILNISLCQRWIMPPIVSKCEEINMTTVHLIAEEDWCQSIIEYLEHGKLPKDSHHKTE

XP_031737045.1 uncharacterized protein LOC116402134 [Cucumis sativus]7.8e-6579.27Show/hide
Query:  MLPYSFALAELCSNNVAEYQALIIDLQIVLEIKVSLIEIYGDSKLIISQLLLQYDVKHEDLKSYFTYARQWMERFDSVMLEHVPRVENKRAYKLANLATA
        MLPYSFAL+ELCSNNVAEYQALII LQI LEI VS IE+YGDSKLII+QL LQYDVKHEDLK YF YARQ ME+FD+VMLEHVPRVENKRA  LANLATA
Subjt:  MLPYSFALAELCSNNVAEYQALIIDLQIVLEIKVSLIEIYGDSKLIISQLLLQYDVKHEDLKSYFTYARQWMERFDSVMLEHVPRVENKRAYKLANLATA

Query:  LTMVDDGILNISLCQRWIMPPIVSKCEEINMTTVHLIAEEDWCQSIIEYLEHGKLPKDSHHKTE
        LTM DD  LNI LCQRWI+PP+  +C+E+NM T +LI EEDW Q IIEYLEHGKLPKDS HK E
Subjt:  LTMVDDGILNISLCQRWIMPPIVSKCEEINMTTVHLIAEEDWCQSIIEYLEHGKLPKDSHHKTE

XP_031739134.1 uncharacterized protein LOC116402863 [Cucumis sativus]7.8e-6579.27Show/hide
Query:  MLPYSFALAELCSNNVAEYQALIIDLQIVLEIKVSLIEIYGDSKLIISQLLLQYDVKHEDLKSYFTYARQWMERFDSVMLEHVPRVENKRAYKLANLATA
        MLPYSFAL+ELCSNNVAEYQALII LQI LEI VS IE+YGDSKLII+QL LQYDVKHEDLK YF YARQ ME+FD+VMLEHVPRVENKRA  LANLATA
Subjt:  MLPYSFALAELCSNNVAEYQALIIDLQIVLEIKVSLIEIYGDSKLIISQLLLQYDVKHEDLKSYFTYARQWMERFDSVMLEHVPRVENKRAYKLANLATA

Query:  LTMVDDGILNISLCQRWIMPPIVSKCEEINMTTVHLIAEEDWCQSIIEYLEHGKLPKDSHHKTE
        LTM DD  LNI LCQRWI+PP+  +C+E+NM T +LI EEDW Q IIEYLEHGKLPKDS HK E
Subjt:  LTMVDDGILNISLCQRWIMPPIVSKCEEINMTTVHLIAEEDWCQSIIEYLEHGKLPKDSHHKTE

XP_031740568.1 uncharacterized protein LOC116403508 [Cucumis sativus]2.0e-6579.27Show/hide
Query:  MLPYSFALAELCSNNVAEYQALIIDLQIVLEIKVSLIEIYGDSKLIISQLLLQYDVKHEDLKSYFTYARQWMERFDSVMLEHVPRVENKRAYKLANLATA
        MLPYSFAL+ELCSNNVAEYQALII LQI LEI+VS IE+YGDSKLII+QL LQYDVKHEDLK YF YARQ ME+FD+VMLEHVPRVENKRA  LANLATA
Subjt:  MLPYSFALAELCSNNVAEYQALIIDLQIVLEIKVSLIEIYGDSKLIISQLLLQYDVKHEDLKSYFTYARQWMERFDSVMLEHVPRVENKRAYKLANLATA

Query:  LTMVDDGILNISLCQRWIMPPIVSKCEEINMTTVHLIAEEDWCQSIIEYLEHGKLPKDSHHKTE
        LTM DD  LNI LCQRWI+PP+  +C+E+NM T +LI EEDW Q IIEYLEHGKLPKDS HK E
Subjt:  LTMVDDGILNISLCQRWIMPPIVSKCEEINMTTVHLIAEEDWCQSIIEYLEHGKLPKDSHHKTE

XP_031742390.1 uncharacterized protein LOC116401672 [Cucumis sativus]7.8e-6579.27Show/hide
Query:  MLPYSFALAELCSNNVAEYQALIIDLQIVLEIKVSLIEIYGDSKLIISQLLLQYDVKHEDLKSYFTYARQWMERFDSVMLEHVPRVENKRAYKLANLATA
        MLPYSFAL+ELCSNNVAEYQALII LQI LEI VS IE+YGDSKLII+QL LQYDVKHEDLK YF YARQ ME+FD+VMLEHVPRVENKRA  LANLATA
Subjt:  MLPYSFALAELCSNNVAEYQALIIDLQIVLEIKVSLIEIYGDSKLIISQLLLQYDVKHEDLKSYFTYARQWMERFDSVMLEHVPRVENKRAYKLANLATA

Query:  LTMVDDGILNISLCQRWIMPPIVSKCEEINMTTVHLIAEEDWCQSIIEYLEHGKLPKDSHHKTE
        LTM DD  LNI LCQRWI+PP+  +C+E+NM T +LI EEDW Q IIEYLEHGKLPKDS HK E
Subjt:  LTMVDDGILNISLCQRWIMPPIVSKCEEINMTTVHLIAEEDWCQSIIEYLEHGKLPKDSHHKTE

TrEMBL top hitse value%identityAlignment
A0A5A7SNS2 Ribonuclease H4.6e-6378.66Show/hide
Query:  MLPYSFALAELCSNNVAEYQALIIDLQIVLEIKVSLIEIYGDSKLIISQLLLQYDVKHEDLKSYFTYARQWMERFDSVMLEHVPRVENKRAYKLANLATA
        MLPYSFALAELCSNNVAE QAL I LQ+ LEI VSLIEIY D KLII+QL LQYDVKHEDLK YFTYARQ MER DSVMLEHVPR+ENKRA  L NLATA
Subjt:  MLPYSFALAELCSNNVAEYQALIIDLQIVLEIKVSLIEIYGDSKLIISQLLLQYDVKHEDLKSYFTYARQWMERFDSVMLEHVPRVENKRAYKLANLATA

Query:  LTMVDDGILNISLCQRWIMPPIVSKCEEINMTTVHLIAEEDWCQSIIEYLEHGKLPKDSHHKTE
        L M D+  LNI LCQRWIMPPI+ +C+E N+TT HLI EEDW Q IIEYLEHGKLPKDS HKT+
Subjt:  LTMVDDGILNISLCQRWIMPPIVSKCEEINMTTVHLIAEEDWCQSIIEYLEHGKLPKDSHHKTE

A0A5A7SPV8 Ribonuclease H9.3e-6478.05Show/hide
Query:  MLPYSFALAELCSNNVAEYQALIIDLQIVLEIKVSLIEIYGDSKLIISQLLLQYDVKHEDLKSYFTYARQWMERFDSVMLEHVPRVENKRAYKLANLATA
        MLPYSF LAELC NNVAEYQALII LQ+ LEI+VS I+IYGDSKLII+QL LQYDVKHEDLK YFTYARQ MERFDSVML+HVPR ENKRA  LANLATA
Subjt:  MLPYSFALAELCSNNVAEYQALIIDLQIVLEIKVSLIEIYGDSKLIISQLLLQYDVKHEDLKSYFTYARQWMERFDSVMLEHVPRVENKRAYKLANLATA

Query:  LTMVDDGILNISLCQRWIMPPIVSKCEEINMTTVHLIAEEDWCQSIIEYLEHGKLPKDSHHKTE
        L M D+  LNI LCQ+WIMPP++ +C+E N+T  HLI EEDW Q IIEYLEHGKLPKDS HKTE
Subjt:  LTMVDDGILNISLCQRWIMPPIVSKCEEINMTTVHLIAEEDWCQSIIEYLEHGKLPKDSHHKTE

A0A5A7U8J5 Ribonuclease H2.9e-6579.88Show/hide
Query:  MLPYSFALAELCSNNVAEYQALIIDLQIVLEIKVSLIEIYGDSKLIISQLLLQYDVKHEDLKSYFTYARQWMERFDSVMLEHVPRVENKRAYKLANLATA
        MLPYSFALAELCSNNVAEYQALII LQ+ LEI+VS IEIYGDSKLII+QL LQYDVKHEDLK YFTYARQ MERFDSVMLEHVPR ENKRA  LANLATA
Subjt:  MLPYSFALAELCSNNVAEYQALIIDLQIVLEIKVSLIEIYGDSKLIISQLLLQYDVKHEDLKSYFTYARQWMERFDSVMLEHVPRVENKRAYKLANLATA

Query:  LTMVDDGILNISLCQRWIMPPIVSKCEEINMTTVHLIAEEDWCQSIIEYLEHGKLPKDSHHKTE
        L M D+  LNI LCQ+WIMPP++ +C+E N+TT HLI EEDW Q IIEYL+HGKL KDS HKTE
Subjt:  LTMVDDGILNISLCQRWIMPPIVSKCEEINMTTVHLIAEEDWCQSIIEYLEHGKLPKDSHHKTE

A0A5D3BZ59 Ribonuclease H4.6e-6378.66Show/hide
Query:  MLPYSFALAELCSNNVAEYQALIIDLQIVLEIKVSLIEIYGDSKLIISQLLLQYDVKHEDLKSYFTYARQWMERFDSVMLEHVPRVENKRAYKLANLATA
        MLPYSFALAELCSNNVAE QAL I LQ+ LEI VSLIEIY D KLII+QL LQYDVKHEDLK YFTYARQ MER DSVMLEHVPR+ENKRA  L NLATA
Subjt:  MLPYSFALAELCSNNVAEYQALIIDLQIVLEIKVSLIEIYGDSKLIISQLLLQYDVKHEDLKSYFTYARQWMERFDSVMLEHVPRVENKRAYKLANLATA

Query:  LTMVDDGILNISLCQRWIMPPIVSKCEEINMTTVHLIAEEDWCQSIIEYLEHGKLPKDSHHKTE
        L M D+  LNI LCQRWIMPPI+ +C+E N+TT HLI EEDW Q IIEYLEHGKLPKDS HKT+
Subjt:  LTMVDDGILNISLCQRWIMPPIVSKCEEINMTTVHLIAEEDWCQSIIEYLEHGKLPKDSHHKTE

A0A5D3DML1 RNase H domain-containing protein9.3e-6475.74Show/hide
Query:  MLPYSFALAELCSNNVAEYQALIIDLQIVLEIKVSLIEIYGDSKLIISQLLLQYDVKHEDLKSYFTYARQWMERFDSVMLEHVPRVENKRAYKLANLATA
        ML YSFALAELCSNNVAEYQALII LQ+ LEI+VS IEIYGDSKLII+QL LQYDVKHEDLK YFTYARQ+ME+FDSVMLEHVP+ ENKRA  L NLATA
Subjt:  MLPYSFALAELCSNNVAEYQALIIDLQIVLEIKVSLIEIYGDSKLIISQLLLQYDVKHEDLKSYFTYARQWMERFDSVMLEHVPRVENKRAYKLANLATA

Query:  LTMVDDGILNISLCQRWIMPPIVSKCEEINMTTVHLIAEEDWCQSIIEYLEHGKLPKDSHHKTEDTNGK
        L M D+  LNI LCQ+WIMPP++ +C+E+N+TT HLI EEDW Q IIEYLEHGKL KDS HKT++ + K
Subjt:  LTMVDDGILNISLCQRWIMPPIVSKCEEINMTTVHLIAEEDWCQSIIEYLEHGKLPKDSHHKTEDTNGK

SwissProt top hitse value%identityAlignment
F9VN79 Ribonuclease HI7.2e-0534.83Show/hide
Query:  SNNVAEYQALIIDLQIVLEIKVSLIEIYGDSKLIISQLLLQYDVKHEDLKSYFTYARQWMERFDSVMLEHVPRVENKRAYKLANLATAL
        +NNVAEY  LI  ++ +L + +S   I GDS+L+I Q+  +Y VK + +   +  A +  ++ ++ ++  VPR ENK A +L+ +A  L
Subjt:  SNNVAEYQALIIDLQIVLEIKVSLIEIYGDSKLIISQLLLQYDVKHEDLKSYFTYARQWMERFDSVMLEHVPRVENKRAYKLANLATAL

P64956 Uncharacterized protein Mb2253c2.2e-0635.71Show/hide
Query:  SNNVAEYQALIIDLQIVLEIKVSLIEIYGDSKLIISQLLLQYDVKHEDLKSYFTYARQWMERFDSVMLEHVPRVENKRAYKLAN
        +NNVAEY+ LI  L   +++  +   +  DSKL++ Q+  ++ VKH DL   +  A+    +F  +  E VPR  N  A +LAN
Subjt:  SNNVAEYQALIIDLQIVLEIKVSLIEIYGDSKLIISQLLLQYDVKHEDLKSYFTYARQWMERFDSVMLEHVPRVENKRAYKLAN

P9WLH4 Uncharacterized protein MT22872.2e-0635.71Show/hide
Query:  SNNVAEYQALIIDLQIVLEIKVSLIEIYGDSKLIISQLLLQYDVKHEDLKSYFTYARQWMERFDSVMLEHVPRVENKRAYKLAN
        +NNVAEY+ LI  L   +++  +   +  DSKL++ Q+  ++ VKH DL   +  A+    +F  +  E VPR  N  A +LAN
Subjt:  SNNVAEYQALIIDLQIVLEIKVSLIEIYGDSKLIISQLLLQYDVKHEDLKSYFTYARQWMERFDSVMLEHVPRVENKRAYKLAN

P9WLH5 Bifunctional protein Rv2228c2.2e-0635.71Show/hide
Query:  SNNVAEYQALIIDLQIVLEIKVSLIEIYGDSKLIISQLLLQYDVKHEDLKSYFTYARQWMERFDSVMLEHVPRVENKRAYKLAN
        +NNVAEY+ LI  L   +++  +   +  DSKL++ Q+  ++ VKH DL   +  A+    +F  +  E VPR  N  A +LAN
Subjt:  SNNVAEYQALIIDLQIVLEIKVSLIEIYGDSKLIISQLLLQYDVKHEDLKSYFTYARQWMERFDSVMLEHVPRVENKRAYKLAN

Q9HSF6 Ribonuclease HI2.0e-0740.7Show/hide
Query:  SNNVAEYQALIIDLQIVLEIKVSLIEIYGDSKLIISQLLLQYDVKHEDLKSYFTYARQWMERFDSVMLEHVPRVENKRAYKLANLA
        +NN AEY ALI  L+   +     IE+ GDS+L+  QL   +D    DL+     AR+ +  FD   + HVPR  N+RA  LAN A
Subjt:  SNNVAEYQALIIDLQIVLEIKVSLIEIYGDSKLIISQLLLQYDVKHEDLKSYFTYARQWMERFDSVMLEHVPRVENKRAYKLANLA

Arabidopsis top hitse value%identityAlignment
AT1G24090.1 RNase H family protein1.0e-0637.36Show/hide
Query:  LCSNNVAEYQALIIDLQIVLEIKVSLIEIYGDSKLIISQLLLQYDVKHEDLKSYFTYARQWMERFDSVMLEHVPRVENKRAYKLANLATAL
        + +NN AEY ALI+ L+  +E     I++ GDSKL+  Q+  Q+ V HE L      A+    +  S  + HV R  N  A + ANLA  L
Subjt:  LCSNNVAEYQALIIDLQIVLEIKVSLIEIYGDSKLIISQLLLQYDVKHEDLKSYFTYARQWMERFDSVMLEHVPRVENKRAYKLANLATAL

AT3G01410.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein3.9e-0631.46Show/hide
Query:  SNNVAEYQALIIDLQIVLEIKVSLIEIYGDSKLIISQLLLQYDVKHEDLKSYFTYARQWMERFDSVMLEHVPRVENKRAYKLANLATAL
        +NNVAEY+AL++ L+  L+     + + GDS L+  Q+   +   H  +      A++ M  F +  ++H+ R +N  A K AN A  L
Subjt:  SNNVAEYQALIIDLQIVLEIKVSLIEIYGDSKLIISQLLLQYDVKHEDLKSYFTYARQWMERFDSVMLEHVPRVENKRAYKLANLATAL

AT3G01410.2 Polynucleotidyl transferase, ribonuclease H-like superfamily protein3.9e-0631.46Show/hide
Query:  SNNVAEYQALIIDLQIVLEIKVSLIEIYGDSKLIISQLLLQYDVKHEDLKSYFTYARQWMERFDSVMLEHVPRVENKRAYKLANLATAL
        +NNVAEY+AL++ L+  L+     + + GDS L+  Q+   +   H  +      A++ M  F +  ++H+ R +N  A K AN A  L
Subjt:  SNNVAEYQALIIDLQIVLEIKVSLIEIYGDSKLIISQLLLQYDVKHEDLKSYFTYARQWMERFDSVMLEHVPRVENKRAYKLANLATAL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTGCCTTATAGCTTTGCGCTTGCTGAACTATGCTCGAACAATGTGGCTGAATATCAGGCTTTGATAATTGACCTTCAAATAGTATTAGAGATCAAAGTGTCATTAAT
AGAAATTTATGGTGATTCAAAGTTGATAATCAGTCAACTCTTGCTTCAGTATGATGTGAAACATGAAGACTTGAAGTCGTACTTCACTTATGCTCGACAATGGATGGAAA
GGTTTGATAGTGTGATGCTGGAACATGTCCCTAGAGTAGAAAATAAAAGGGCGTACAAATTGGCAAACTTGGCCACTGCCTTGACAATGGTAGATGATGGAATTCTGAAT
ATATCGCTTTGTCAACGATGGATTATGCCACCGATCGTGTCCAAATGTGAGGAAATAAACATGACGACAGTCCATTTGATTGCTGAAGAAGATTGGTGTCAATCCATCAT
TGAGTATCTTGAACATGGAAAGCTTCCAAAAGATTCCCATCATAAAACTGAGGACACAAATGGTAAAGATAAATCAAGCAATATACATCTAGACTTCTTTATTTCTAAGC
ATCATAACTGA
mRNA sequenceShow/hide mRNA sequence
ATGTTGCCTTATAGCTTTGCGCTTGCTGAACTATGCTCGAACAATGTGGCTGAATATCAGGCTTTGATAATTGACCTTCAAATAGTATTAGAGATCAAAGTGTCATTAAT
AGAAATTTATGGTGATTCAAAGTTGATAATCAGTCAACTCTTGCTTCAGTATGATGTGAAACATGAAGACTTGAAGTCGTACTTCACTTATGCTCGACAATGGATGGAAA
GGTTTGATAGTGTGATGCTGGAACATGTCCCTAGAGTAGAAAATAAAAGGGCGTACAAATTGGCAAACTTGGCCACTGCCTTGACAATGGTAGATGATGGAATTCTGAAT
ATATCGCTTTGTCAACGATGGATTATGCCACCGATCGTGTCCAAATGTGAGGAAATAAACATGACGACAGTCCATTTGATTGCTGAAGAAGATTGGTGTCAATCCATCAT
TGAGTATCTTGAACATGGAAAGCTTCCAAAAGATTCCCATCATAAAACTGAGGACACAAATGGTAAAGATAAATCAAGCAATATACATCTAGACTTCTTTATTTCTAAGC
ATCATAACTGA
Protein sequenceShow/hide protein sequence
MLPYSFALAELCSNNVAEYQALIIDLQIVLEIKVSLIEIYGDSKLIISQLLLQYDVKHEDLKSYFTYARQWMERFDSVMLEHVPRVENKRAYKLANLATALTMVDDGILN
ISLCQRWIMPPIVSKCEEINMTTVHLIAEEDWCQSIIEYLEHGKLPKDSHHKTEDTNGKDKSSNIHLDFFISKHHN