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PI0016929 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0016929
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionTy3-gypsy retrotransposon protein
Genome locationchr02:18440817..18441263
RNA-Seq ExpressionPI0016929
SyntenyPI0016929
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0025377.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]4.4e-5577.03Show/hide
Query:  MMSKGNTSKALSDINKRPNTHSRSKETQSFEYMPPFEAAKNIWEQLSKPPKGGIIIKENLIVEEHISSFKHSSEERPHPNIMSVMVADVDTSEDRMTELE
        M S+GNTSKALSDI KRPNTHSRS+E QSFE  PPFE AKNIWEQ+SKPPKGGI+IKEN  ++EH SS + SSEE PHPNIMSVMV +VDTSE+RM ELE
Subjt:  MMSKGNTSKALSDINKRPNTHSRSKETQSFEYMPPFEAAKNIWEQLSKPPKGGIIIKENLIVEEHISSFKHSSEERPHPNIMSVMVADVDTSEDRMTELE

Query:  KKVNMLMKAIEERDYEIASFKKHIKSRDAAKSSHTHTVKNNDKGKIVM
        KKVNMLMK +EERDYEIA  K HI+SRDAA+SSH HTVKN +KGK VM
Subjt:  KKVNMLMKAIEERDYEIASFKKHIKSRDAAKSSHTHTVKNNDKGKIVM

KAA0041883.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]1.5e-5577.7Show/hide
Query:  MMSKGNTSKALSDINKRPNTHSRSKETQSFEYMPPFEAAKNIWEQLSKPPKGGIIIKENLIVEEHISSFKHSSEERPHPNIMSVMVADVDTSEDRMTELE
        M S+GNTSK LSDI KRPNTHSRS+E QSFE  PPFE AKNIWEQ+SKPPKGGI+IKEN  ++EH S  +HSSEE  HPNIMSVMV DVDTSE+RM ELE
Subjt:  MMSKGNTSKALSDINKRPNTHSRSKETQSFEYMPPFEAAKNIWEQLSKPPKGGIIIKENLIVEEHISSFKHSSEERPHPNIMSVMVADVDTSEDRMTELE

Query:  KKVNMLMKAIEERDYEIASFKKHIKSRDAAKSSHTHTVKNNDKGKIVM
        KKVNMLMK +EERDYEIAS K HI+SRDAA+SSH HTVKN DKGK VM
Subjt:  KKVNMLMKAIEERDYEIASFKKHIKSRDAAKSSHTHTVKNNDKGKIVM

KAA0045440.1 retrotransposon gag protein [Cucumis melo var. makuwa]5.8e-5577.03Show/hide
Query:  MMSKGNTSKALSDINKRPNTHSRSKETQSFEYMPPFEAAKNIWEQLSKPPKGGIIIKENLIVEEHISSFKHSSEERPHPNIMSVMVADVDTSEDRMTELE
        M S+GNTSKALSDI+KRPNTHSRS+E QSFE  PPFE AKNIWE++SKPPKGGI+IKEN  ++EH SS K SSEE PHPNIMSVMV +VDTSE+RM ELE
Subjt:  MMSKGNTSKALSDINKRPNTHSRSKETQSFEYMPPFEAAKNIWEQLSKPPKGGIIIKENLIVEEHISSFKHSSEERPHPNIMSVMVADVDTSEDRMTELE

Query:  KKVNMLMKAIEERDYEIASFKKHIKSRDAAKSSHTHTVKNNDKGKIVM
        KKVNMLMK +EERDYEIA  K HI+S DAA+SSH HTVKN DKGK VM
Subjt:  KKVNMLMKAIEERDYEIASFKKHIKSRDAAKSSHTHTVKNNDKGKIVM

KAA0065303.1 retrotransposon gag protein [Cucumis melo var. makuwa]3.4e-5578.38Show/hide
Query:  MMSKGNTSKALSDINKRPNTHSRSKETQSFEYMPPFEAAKNIWEQLSKPPKGGIIIKENLIVEEHISSFKHSSEERPHPNIMSVMVADVDTSEDRMTELE
        M S+GNTSKALSDI KRPNT SRS+E QS E MPPFE AKNIWEQ+SKPPKGGI+IKEN  ++EH SS K SSEE PHPNIMSVMVA+VDTSE+RM ELE
Subjt:  MMSKGNTSKALSDINKRPNTHSRSKETQSFEYMPPFEAAKNIWEQLSKPPKGGIIIKENLIVEEHISSFKHSSEERPHPNIMSVMVADVDTSEDRMTELE

Query:  KKVNMLMKAIEERDYEIASFKKHIKSRDAAKSSHTHTVKNNDKGKIVM
        KKVNMLMK +EERDYEIA  K HI+SRDAA+SSH HTVKN DKGK VM
Subjt:  KKVNMLMKAIEERDYEIASFKKHIKSRDAAKSSHTHTVKNNDKGKIVM

TYK09793.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]1.2e-5577.7Show/hide
Query:  MMSKGNTSKALSDINKRPNTHSRSKETQSFEYMPPFEAAKNIWEQLSKPPKGGIIIKENLIVEEHISSFKHSSEERPHPNIMSVMVADVDTSEDRMTELE
        M S+GNTSKALSDI KRPNTHSRS+E QSFE  PPFE AKNIWEQ+SKPPKGGI+IKEN  ++EH SS + SSEE PHPNIMSVMV +VDTSE+RMTELE
Subjt:  MMSKGNTSKALSDINKRPNTHSRSKETQSFEYMPPFEAAKNIWEQLSKPPKGGIIIKENLIVEEHISSFKHSSEERPHPNIMSVMVADVDTSEDRMTELE

Query:  KKVNMLMKAIEERDYEIASFKKHIKSRDAAKSSHTHTVKNNDKGKIVM
        KKVNMLMK +EERDYEIA  K HI+S DAA+SSH HTVKN DKGK VM
Subjt:  KKVNMLMKAIEERDYEIASFKKHIKSRDAAKSSHTHTVKNNDKGKIVM

TrEMBL top hitse value%identityAlignment
A0A5A7SKY7 Ty3-gypsy retrotransposon protein2.2e-5577.03Show/hide
Query:  MMSKGNTSKALSDINKRPNTHSRSKETQSFEYMPPFEAAKNIWEQLSKPPKGGIIIKENLIVEEHISSFKHSSEERPHPNIMSVMVADVDTSEDRMTELE
        M S+GNTSKALSDI KRPNTHSRS+E QSFE  PPFE AKNIWEQ+SKPPKGGI+IKEN  ++EH SS + SSEE PHPNIMSVMV +VDTSE+RM ELE
Subjt:  MMSKGNTSKALSDINKRPNTHSRSKETQSFEYMPPFEAAKNIWEQLSKPPKGGIIIKENLIVEEHISSFKHSSEERPHPNIMSVMVADVDTSEDRMTELE

Query:  KKVNMLMKAIEERDYEIASFKKHIKSRDAAKSSHTHTVKNNDKGKIVM
        KKVNMLMK +EERDYEIA  K HI+SRDAA+SSH HTVKN +KGK VM
Subjt:  KKVNMLMKAIEERDYEIASFKKHIKSRDAAKSSHTHTVKNNDKGKIVM

A0A5A7TQK6 Retrotransposon gag protein2.8e-5577.03Show/hide
Query:  MMSKGNTSKALSDINKRPNTHSRSKETQSFEYMPPFEAAKNIWEQLSKPPKGGIIIKENLIVEEHISSFKHSSEERPHPNIMSVMVADVDTSEDRMTELE
        M S+GNTSKALSDI+KRPNTHSRS+E QSFE  PPFE AKNIWE++SKPPKGGI+IKEN  ++EH SS K SSEE PHPNIMSVMV +VDTSE+RM ELE
Subjt:  MMSKGNTSKALSDINKRPNTHSRSKETQSFEYMPPFEAAKNIWEQLSKPPKGGIIIKENLIVEEHISSFKHSSEERPHPNIMSVMVADVDTSEDRMTELE

Query:  KKVNMLMKAIEERDYEIASFKKHIKSRDAAKSSHTHTVKNNDKGKIVM
        KKVNMLMK +EERDYEIA  K HI+S DAA+SSH HTVKN DKGK VM
Subjt:  KKVNMLMKAIEERDYEIASFKKHIKSRDAAKSSHTHTVKNNDKGKIVM

A0A5A7VAV4 Retrotransposon gag protein1.6e-5578.38Show/hide
Query:  MMSKGNTSKALSDINKRPNTHSRSKETQSFEYMPPFEAAKNIWEQLSKPPKGGIIIKENLIVEEHISSFKHSSEERPHPNIMSVMVADVDTSEDRMTELE
        M S+GNTSKALSDI KRPNT SRS+E QS E MPPFE AKNIWEQ+SKPPKGGI+IKEN  ++EH SS K SSEE PHPNIMSVMVA+VDTSE+RM ELE
Subjt:  MMSKGNTSKALSDINKRPNTHSRSKETQSFEYMPPFEAAKNIWEQLSKPPKGGIIIKENLIVEEHISSFKHSSEERPHPNIMSVMVADVDTSEDRMTELE

Query:  KKVNMLMKAIEERDYEIASFKKHIKSRDAAKSSHTHTVKNNDKGKIVM
        KKVNMLMK +EERDYEIA  K HI+SRDAA+SSH HTVKN DKGK VM
Subjt:  KKVNMLMKAIEERDYEIASFKKHIKSRDAAKSSHTHTVKNNDKGKIVM

A0A5D3C4W1 Ty3-gypsy retrotransposon protein7.4e-5677.7Show/hide
Query:  MMSKGNTSKALSDINKRPNTHSRSKETQSFEYMPPFEAAKNIWEQLSKPPKGGIIIKENLIVEEHISSFKHSSEERPHPNIMSVMVADVDTSEDRMTELE
        M S+GNTSK LSDI KRPNTHSRS+E QSFE  PPFE AKNIWEQ+SKPPKGGI+IKEN  ++EH S  +HSSEE  HPNIMSVMV DVDTSE+RM ELE
Subjt:  MMSKGNTSKALSDINKRPNTHSRSKETQSFEYMPPFEAAKNIWEQLSKPPKGGIIIKENLIVEEHISSFKHSSEERPHPNIMSVMVADVDTSEDRMTELE

Query:  KKVNMLMKAIEERDYEIASFKKHIKSRDAAKSSHTHTVKNNDKGKIVM
        KKVNMLMK +EERDYEIAS K HI+SRDAA+SSH HTVKN DKGK VM
Subjt:  KKVNMLMKAIEERDYEIASFKKHIKSRDAAKSSHTHTVKNNDKGKIVM

A0A5D3CD55 Ty3-gypsy retrotransposon protein5.7e-5677.7Show/hide
Query:  MMSKGNTSKALSDINKRPNTHSRSKETQSFEYMPPFEAAKNIWEQLSKPPKGGIIIKENLIVEEHISSFKHSSEERPHPNIMSVMVADVDTSEDRMTELE
        M S+GNTSKALSDI KRPNTHSRS+E QSFE  PPFE AKNIWEQ+SKPPKGGI+IKEN  ++EH SS + SSEE PHPNIMSVMV +VDTSE+RMTELE
Subjt:  MMSKGNTSKALSDINKRPNTHSRSKETQSFEYMPPFEAAKNIWEQLSKPPKGGIIIKENLIVEEHISSFKHSSEERPHPNIMSVMVADVDTSEDRMTELE

Query:  KKVNMLMKAIEERDYEIASFKKHIKSRDAAKSSHTHTVKNNDKGKIVM
        KKVNMLMK +EERDYEIA  K HI+S DAA+SSH HTVKN DKGK VM
Subjt:  KKVNMLMKAIEERDYEIASFKKHIKSRDAAKSSHTHTVKNNDKGKIVM

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATGTCTAAAGGCAATACTTCCAAAGCTCTAAGCGACATCAACAAAAGACCAAATACTCACAGCCGCTCAAAGGAGACTCAATCGTTTGAGTATATGCCACCCTTTGA
GGCCGCAAAGAATATTTGGGAACAACTTTCAAAGCCACCAAAAGGTGGAATTATAATCAAAGAAAATCTTATAGTCGAGGAACACATTTCGTCCTTTAAACACTCAAGTG
AGGAGAGGCCTCACCCAAATATAATGTCAGTTATGGTGGCTGACGTGGATACAAGTGAAGACAGAATGACAGAGCTTGAAAAGAAGGTTAACATGCTCATGAAGGCAATT
GAAGAAAGGGATTATGAGATTGCATCTTTCAAGAAACACATTAAGAGTCGTGACGCTGCTAAATCAAGTCATACACATACCGTCAAGAATAATGACAAAGGGAAGATAGT
TATGTAA
mRNA sequenceShow/hide mRNA sequence
ATGATGTCTAAAGGCAATACTTCCAAAGCTCTAAGCGACATCAACAAAAGACCAAATACTCACAGCCGCTCAAAGGAGACTCAATCGTTTGAGTATATGCCACCCTTTGA
GGCCGCAAAGAATATTTGGGAACAACTTTCAAAGCCACCAAAAGGTGGAATTATAATCAAAGAAAATCTTATAGTCGAGGAACACATTTCGTCCTTTAAACACTCAAGTG
AGGAGAGGCCTCACCCAAATATAATGTCAGTTATGGTGGCTGACGTGGATACAAGTGAAGACAGAATGACAGAGCTTGAAAAGAAGGTTAACATGCTCATGAAGGCAATT
GAAGAAAGGGATTATGAGATTGCATCTTTCAAGAAACACATTAAGAGTCGTGACGCTGCTAAATCAAGTCATACACATACCGTCAAGAATAATGACAAAGGGAAGATAGT
TATGTAA
Protein sequenceShow/hide protein sequence
MMSKGNTSKALSDINKRPNTHSRSKETQSFEYMPPFEAAKNIWEQLSKPPKGGIIIKENLIVEEHISSFKHSSEERPHPNIMSVMVADVDTSEDRMTELEKKVNMLMKAI
EERDYEIASFKKHIKSRDAAKSSHTHTVKNNDKGKIVM