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PI0016939 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0016939
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionReverse transcriptase domain-containing protein
Genome locationchr05:8048544..8049092
RNA-Seq ExpressionPI0016939
SyntenyPI0016939
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0006281 - DNA repair (biological process)
GO:0016021 - integral component of membrane (cellular component)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
GO:0004518 - nuclease activity (molecular function)
InterPro domainsIPR004808 - AP endonuclease 1
IPR036691 - Endonuclease/exonuclease/phosphatase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0049770.1 hypothetical protein E6C27_scaffold76G001230 [Cucumis melo var. makuwa]2.4e-6675.46Show/hide
Query:  VKCKAVSDFLRVSSVGFCCLLETRVREGNFCSFSGRFGDAWSYSCSYSSSGVGRIWVMWKKDRFDFTPSVVDKQFVSGVISDLHSGVTVEVLCVYASNSN
        +K KAV DFL  SS+GFCCLLETRVREGNF S S RFG++W YSCSYS+SGVGRIWVMWKK+RF F+  V+D+QFV+G ++DL SGV VEV CVYASNSN
Subjt:  VKCKAVSDFLRVSSVGFCCLLETRVREGNFCSFSGRFGDAWSYSCSYSSSGVGRIWVMWKKDRFDFTPSVVDKQFVSGVISDLHSGVTVEVLCVYASNSN

Query:  IDRRVLWRRLVEITSRWSSPGVVMGDFNAIRVHSEACGGSPVTRDMEEFDLAIREADLVEPTV
        I+RR+LWRRLVEITS WS+PGVVMGDFNAIRVHSEA GGSP+  +ME+FDLAIR+ADL+EP+V
Subjt:  IDRRVLWRRLVEITSRWSSPGVVMGDFNAIRVHSEACGGSPVTRDMEEFDLAIREADLVEPTV

KAA0060724.1 hypothetical protein E6C27_scaffold72G00110 [Cucumis melo var. makuwa]1.5e-6072.39Show/hide
Query:  VKCKAVSDFLRVSSVGFCCLLETRVREGNFCSFSGRFGDAWSYSCSYSSSGVGRIWVMWKKDRFDFTPSVVDKQFVSGVISDLHSGVTVEVLCVYASNSN
        VKCK V DFL  SSVGFCCLLE+R RE NF S S RFG +W YSCSYS+SGVGRIWVMWKK+RF F+  +VD+QFV G ++DL S V VEV CVYAS SN
Subjt:  VKCKAVSDFLRVSSVGFCCLLETRVREGNFCSFSGRFGDAWSYSCSYSSSGVGRIWVMWKKDRFDFTPSVVDKQFVSGVISDLHSGVTVEVLCVYASNSN

Query:  IDRRVLWRRLVEITSRWSSPGVVMGDFNAIRVHSEACGGSPVTRDMEEFDLAIREADLVEPTV
        I+RR+LWRRLVEITS WSSPGVVMGDFN IRVHSEA GGSP   +ME+FDL I +ADL+EP+V
Subjt:  IDRRVLWRRLVEITSRWSSPGVVMGDFNAIRVHSEACGGSPVTRDMEEFDLAIREADLVEPTV

KAA0062319.1 hypothetical protein E6C27_scaffold154G00700 [Cucumis melo var. makuwa]1.7e-6474.85Show/hide
Query:  VKCKAVSDFLRVSSVGFCCLLETRVREGNFCSFSGRFGDAWSYSCSYSSSGVGRIWVMWKKDRFDFTPSVVDKQFVSGVISDLHSGVTVEVLCVYASNSN
        +K KAV DFL  SSVGFCCLLETRVREGNF S S +FG++W YSCSYS+SGVGRIWVMWKK+RF F+  V+D+QFV+G ++DL  GV VEV CVYASNSN
Subjt:  VKCKAVSDFLRVSSVGFCCLLETRVREGNFCSFSGRFGDAWSYSCSYSSSGVGRIWVMWKKDRFDFTPSVVDKQFVSGVISDLHSGVTVEVLCVYASNSN

Query:  IDRRVLWRRLVEITSRWSSPGVVMGDFNAIRVHSEACGGSPVTRDMEEFDLAIREADLVEPTV
        I+RR+LWRRLVEITS WS PGVVMGDFNAIRVHSEA GGSP+  +ME+FDLAI +ADLVEP+V
Subjt:  IDRRVLWRRLVEITSRWSSPGVVMGDFNAIRVHSEACGGSPVTRDMEEFDLAIREADLVEPTV

KAA0062888.1 non-LTR retroelement reverse transcriptase-like protein [Cucumis melo var. makuwa]6.4e-6474.85Show/hide
Query:  LNDLVKCKAVSDFLRVSSVGFCCLLETRVREGNFCSFSGRFGDAWSYSCSYSSSGVGRIWVMWKKDRFDFTPSVVDKQFVSGVISDLHSGVTVEVLCVYA
        L+DL K KAVSDFL  SSVGFCCLLETRVRE NF   S RFG++W YSCSYS+SGVGRIWV+WKK+RF F+  VVD+QFV+G ++DL SGV VEV CVYA
Subjt:  LNDLVKCKAVSDFLRVSSVGFCCLLETRVREGNFCSFSGRFGDAWSYSCSYSSSGVGRIWVMWKKDRFDFTPSVVDKQFVSGVISDLHSGVTVEVLCVYA

Query:  SNSNIDRRVLWRRLVEITSRWSSPGVVMGDFNAIRVHSEACGGSPVTRDMEEFDLAIREADLVEPTV
        SNSNI+RR+LWRRLVEITS WSSP VVMGDFNAIRVH EA GGSP+  +ME+FDLA R+ADLVEP+V
Subjt:  SNSNIDRRVLWRRLVEITSRWSSPGVVMGDFNAIRVHSEACGGSPVTRDMEEFDLAIREADLVEPTV

TYK28099.1 uncharacterized protein E5676_scaffold1467G00020 [Cucumis melo var. makuwa]4.8e-5974.83Show/hide
Query:  SSVGFCCLLETRVREGNFCSFSGRFGDAWSYSCSYSSSGVGRIWVMWKKDRFDFTPSVVDKQFVSGVISDLHSGVTVEVLCVYASNSNIDRRVLWRRLVE
        S VGFCCLLETRVREGNF S S RF ++W YSCSYS+SGVGRIWVMWKK+RF F+  V+D+QFV+G ++DL SGV VEV CVYASNSNI+RR+LW RLVE
Subjt:  SSVGFCCLLETRVREGNFCSFSGRFGDAWSYSCSYSSSGVGRIWVMWKKDRFDFTPSVVDKQFVSGVISDLHSGVTVEVLCVYASNSNIDRRVLWRRLVE

Query:  ITSRWSSPGVVMGDFNAIRVHSEACGGSPVTRDMEEFDLAIREADLVEPTV
        ITS WSSPGVVM DFNAIRVHSEA  GSP+  +ME+F+LAIR+ADLVEP+V
Subjt:  ITSRWSSPGVVMGDFNAIRVHSEACGGSPVTRDMEEFDLAIREADLVEPTV

TrEMBL top hitse value%identityAlignment
A0A5A7SPE5 Reverse transcriptase domain-containing protein2.3e-5974.83Show/hide
Query:  SSVGFCCLLETRVREGNFCSFSGRFGDAWSYSCSYSSSGVGRIWVMWKKDRFDFTPSVVDKQFVSGVISDLHSGVTVEVLCVYASNSNIDRRVLWRRLVE
        S VGFCCLLETRVREGNF S S RF ++W YSCSYS+SGVGRIWVMWKK+RF F+  V+D+QFV+G ++DL SGV VEV CVYASNSNI+RR+LW RLVE
Subjt:  SSVGFCCLLETRVREGNFCSFSGRFGDAWSYSCSYSSSGVGRIWVMWKKDRFDFTPSVVDKQFVSGVISDLHSGVTVEVLCVYASNSNIDRRVLWRRLVE

Query:  ITSRWSSPGVVMGDFNAIRVHSEACGGSPVTRDMEEFDLAIREADLVEPTV
        ITS WSSPGVVM DFNAIRVHSEA  GSP+  +ME+F+LAIR+ADLVEP+V
Subjt:  ITSRWSSPGVVMGDFNAIRVHSEACGGSPVTRDMEEFDLAIREADLVEPTV

A0A5A7U3C2 Exo_endo_phos domain-containing protein/DUF4283 domain-containing protein1.1e-6675.46Show/hide
Query:  VKCKAVSDFLRVSSVGFCCLLETRVREGNFCSFSGRFGDAWSYSCSYSSSGVGRIWVMWKKDRFDFTPSVVDKQFVSGVISDLHSGVTVEVLCVYASNSN
        +K KAV DFL  SS+GFCCLLETRVREGNF S S RFG++W YSCSYS+SGVGRIWVMWKK+RF F+  V+D+QFV+G ++DL SGV VEV CVYASNSN
Subjt:  VKCKAVSDFLRVSSVGFCCLLETRVREGNFCSFSGRFGDAWSYSCSYSSSGVGRIWVMWKKDRFDFTPSVVDKQFVSGVISDLHSGVTVEVLCVYASNSN

Query:  IDRRVLWRRLVEITSRWSSPGVVMGDFNAIRVHSEACGGSPVTRDMEEFDLAIREADLVEPTV
        I+RR+LWRRLVEITS WS+PGVVMGDFNAIRVHSEA GGSP+  +ME+FDLAIR+ADL+EP+V
Subjt:  IDRRVLWRRLVEITSRWSSPGVVMGDFNAIRVHSEACGGSPVTRDMEEFDLAIREADLVEPTV

A0A5A7V084 Exo_endo_phos domain-containing protein/DUF4283 domain-containing protein7.2e-6172.39Show/hide
Query:  VKCKAVSDFLRVSSVGFCCLLETRVREGNFCSFSGRFGDAWSYSCSYSSSGVGRIWVMWKKDRFDFTPSVVDKQFVSGVISDLHSGVTVEVLCVYASNSN
        VKCK V DFL  SSVGFCCLLE+R RE NF S S RFG +W YSCSYS+SGVGRIWVMWKK+RF F+  +VD+QFV G ++DL S V VEV CVYAS SN
Subjt:  VKCKAVSDFLRVSSVGFCCLLETRVREGNFCSFSGRFGDAWSYSCSYSSSGVGRIWVMWKKDRFDFTPSVVDKQFVSGVISDLHSGVTVEVLCVYASNSN

Query:  IDRRVLWRRLVEITSRWSSPGVVMGDFNAIRVHSEACGGSPVTRDMEEFDLAIREADLVEPTV
        I+RR+LWRRLVEITS WSSPGVVMGDFN IRVHSEA GGSP   +ME+FDL I +ADL+EP+V
Subjt:  IDRRVLWRRLVEITSRWSSPGVVMGDFNAIRVHSEACGGSPVTRDMEEFDLAIREADLVEPTV

A0A5A7V5J2 Non-LTR retroelement reverse transcriptase-like protein3.1e-6474.85Show/hide
Query:  LNDLVKCKAVSDFLRVSSVGFCCLLETRVREGNFCSFSGRFGDAWSYSCSYSSSGVGRIWVMWKKDRFDFTPSVVDKQFVSGVISDLHSGVTVEVLCVYA
        L+DL K KAVSDFL  SSVGFCCLLETRVRE NF   S RFG++W YSCSYS+SGVGRIWV+WKK+RF F+  VVD+QFV+G ++DL SGV VEV CVYA
Subjt:  LNDLVKCKAVSDFLRVSSVGFCCLLETRVREGNFCSFSGRFGDAWSYSCSYSSSGVGRIWVMWKKDRFDFTPSVVDKQFVSGVISDLHSGVTVEVLCVYA

Query:  SNSNIDRRVLWRRLVEITSRWSSPGVVMGDFNAIRVHSEACGGSPVTRDMEEFDLAIREADLVEPTV
        SNSNI+RR+LWRRLVEITS WSSP VVMGDFNAIRVH EA GGSP+  +ME+FDLA R+ADLVEP+V
Subjt:  SNSNIDRRVLWRRLVEITSRWSSPGVVMGDFNAIRVHSEACGGSPVTRDMEEFDLAIREADLVEPTV

A0A5A7V9D6 Uncharacterized protein8.2e-6574.85Show/hide
Query:  VKCKAVSDFLRVSSVGFCCLLETRVREGNFCSFSGRFGDAWSYSCSYSSSGVGRIWVMWKKDRFDFTPSVVDKQFVSGVISDLHSGVTVEVLCVYASNSN
        +K KAV DFL  SSVGFCCLLETRVREGNF S S +FG++W YSCSYS+SGVGRIWVMWKK+RF F+  V+D+QFV+G ++DL  GV VEV CVYASNSN
Subjt:  VKCKAVSDFLRVSSVGFCCLLETRVREGNFCSFSGRFGDAWSYSCSYSSSGVGRIWVMWKKDRFDFTPSVVDKQFVSGVISDLHSGVTVEVLCVYASNSN

Query:  IDRRVLWRRLVEITSRWSSPGVVMGDFNAIRVHSEACGGSPVTRDMEEFDLAIREADLVEPTV
        I+RR+LWRRLVEITS WS PGVVMGDFNAIRVHSEA GGSP+  +ME+FDLAI +ADLVEP+V
Subjt:  IDRRVLWRRLVEITSRWSSPGVVMGDFNAIRVHSEACGGSPVTRDMEEFDLAIREADLVEPTV

SwissProt top hitse value%identityAlignment
P11369 LINE-1 retrotransposable element ORF2 protein7.0e-0523.16Show/hide
Query:  SWCSWNIRGLNDLVKCKAVSDFLRVSSVGFCCLLETRVREGNFCSFSGRFGDAWSYSCSYSSSGVGRI--WVMWKKDRFDFTPSVV--DKQFVSGVISDL
        S  S NI GLN  +K   ++D+L      FCCL ET +RE +       +     +   + ++G+ +     +   D+ DF P V+  DK+    +I   
Subjt:  SWCSWNIRGLNDLVKCKAVSDFLRVSSVGFCCLLETRVREGNFCSFSGRFGDAWSYSCSYSSSGVGRI--WVMWKKDRFDFTPSVV--DKQFVSGVISDL

Query:  HSGVTVEVLCVYASNSNIDRRVLWRRLVEITSRWSSPGVVMGDFNAIRVHSEACGGSPVTRDMEEFDLAIREADLVE
             + +L +YA N+      +   LV++ +  +   +++GDFN      +      + RD  +    +++ DL +
Subjt:  HSGVTVEVLCVYASNSNIDRRVLWRRLVEITSRWSSPGVVMGDFNAIRVHSEACGGSPVTRDMEEFDLAIREADLVE

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGAGTTCCCATGATTAGTTGGTGTTCGTGGAATATACGAGGTCTTAATGACCTGGTGAAGTGCAAGGCGGTGAGTGATTTCTTGAGGGTTTCCTCTGTTGGGTTTTG
TTGTCTCCTGGAGACAAGAGTTCGTGAGGGAAATTTTTGTTCTTTTTCTGGGAGGTTTGGGGACGCTTGGAGTTACTCTTGTAGTTATAGCAGTAGTGGTGTGGGTCGGA
TTTGGGTGATGTGGAAGAAGGATAGGTTTGATTTTACTCCTAGCGTGGTGGATAAGCAGTTTGTTTCAGGTGTAATTTCTGACTTGCATTCTGGTGTGACTGTGGAGGTG
TTATGTGTTTATGCCTCTAATAGTAATATAGACCGTCGTGTGCTTTGGCGTCGGTTAGTTGAGATCACTTCTAGGTGGTCGAGTCCAGGTGTGGTTATGGGAGATTTTAA
TGCAATTCGAGTGCACTCTGAAGCTTGTGGTGGGAGTCCAGTTACTAGAGATATGGAGGAATTTGATCTTGCTATTCGCGAGGCTGACTTGGTTGAGCCAACTGTTTAG
mRNA sequenceShow/hide mRNA sequence
ATGAGAGTTCCCATGATTAGTTGGTGTTCGTGGAATATACGAGGTCTTAATGACCTGGTGAAGTGCAAGGCGGTGAGTGATTTCTTGAGGGTTTCCTCTGTTGGGTTTTG
TTGTCTCCTGGAGACAAGAGTTCGTGAGGGAAATTTTTGTTCTTTTTCTGGGAGGTTTGGGGACGCTTGGAGTTACTCTTGTAGTTATAGCAGTAGTGGTGTGGGTCGGA
TTTGGGTGATGTGGAAGAAGGATAGGTTTGATTTTACTCCTAGCGTGGTGGATAAGCAGTTTGTTTCAGGTGTAATTTCTGACTTGCATTCTGGTGTGACTGTGGAGGTG
TTATGTGTTTATGCCTCTAATAGTAATATAGACCGTCGTGTGCTTTGGCGTCGGTTAGTTGAGATCACTTCTAGGTGGTCGAGTCCAGGTGTGGTTATGGGAGATTTTAA
TGCAATTCGAGTGCACTCTGAAGCTTGTGGTGGGAGTCCAGTTACTAGAGATATGGAGGAATTTGATCTTGCTATTCGCGAGGCTGACTTGGTTGAGCCAACTGTTTAG
Protein sequenceShow/hide protein sequence
MRVPMISWCSWNIRGLNDLVKCKAVSDFLRVSSVGFCCLLETRVREGNFCSFSGRFGDAWSYSCSYSSSGVGRIWVMWKKDRFDFTPSVVDKQFVSGVISDLHSGVTVEV
LCVYASNSNIDRRVLWRRLVEITSRWSSPGVVMGDFNAIRVHSEACGGSPVTRDMEEFDLAIREADLVEPTV