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PI0016956 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0016956
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrovirus-related Pol polyprotein from transposon 17.6
Genome locationchr09:16411030..16413195
RNA-Seq ExpressionPI0016956
SyntenyPI0016956
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0060833.1 Retrovirus-related Pol polyprotein from transposon 17.6 [Cucumis melo var. makuwa]1.1e-1144.55Show/hide
Query:  MSEGEEPELNFDPEIERTLQQIRRQRRRAQR---MANNNNQAVPLNNVTQEAHPVIIAYDVNKPIREYASASLYDFNTGIAYPTFEEHTRFEMKSMMLQM
        MSEGE+P+   D EIER  Q+ RRQR+R QR     + NNQ  P N   Q  +   +A++ ++PIR   S +LY FN GI YP F E+ RF++K +ML +
Subjt:  MSEGEEPELNFDPEIERTLQQIRRQRRRAQR---MANNNNQAVPLNNVTQEAHPVIIAYDVNKPIREYASASLYDFNTGIAYPTFEEHTRFEMKSMMLQM

Query:  I
        +
Subjt:  I

KAA0062403.1 putative disease resistance RPP13-like protein 1 [Cucumis melo var. makuwa]1.0e-1259.7Show/hide
Query:  MANNNNQAVPLNNVTQEAHPVIIAYDVNKPIREYASASLYDFNTGIAYPTFEEHTRFEMKSMMLQMI
        M N NNQ +P N   Q A+P  +A D ++PIR YAS +LYDFN GIAYPTF E+TRFE+K +MLQ+I
Subjt:  MANNNNQAVPLNNVTQEAHPVIIAYDVNKPIREYASASLYDFNTGIAYPTFEEHTRFEMKSMMLQMI

TYK08803.1 Retrovirus-related Pol polyprotein from transposon 17.6 [Cucumis melo var. makuwa]1.1e-1144.55Show/hide
Query:  MSEGEEPELNFDPEIERTLQQIRRQRRRAQR---MANNNNQAVPLNNVTQEAHPVIIAYDVNKPIREYASASLYDFNTGIAYPTFEEHTRFEMKSMMLQM
        MSEGE+P+   D EIER  Q+ RRQR+R QR     + NNQ  P N   Q  +   +A++ ++PIR   S +LY FN GI YP F E+ RF++K +ML +
Subjt:  MSEGEEPELNFDPEIERTLQQIRRQRRRAQR---MANNNNQAVPLNNVTQEAHPVIIAYDVNKPIREYASASLYDFNTGIAYPTFEEHTRFEMKSMMLQM

Query:  I
        +
Subjt:  I

WP_217833177.1 retrotransposon gag domain-containing protein, partial [Synechococcus sp. PCC 7002]5.1e-1244.17Show/hide
Query:  FMSEGEEPELNFDPEIERTL-QQIR--RQRRRAQRMANN-----NNQAVPLNNVTQEA----------HPVIIAYDVNKPIREYASASLYDFNTGIAYPT
        +MSEG+ P  + DPEIERT  ++IR  +QRR  Q +  N     N    P   V Q A          +P+++A+D N+P+REYAS +LY+F  GI  PT
Subjt:  FMSEGEEPELNFDPEIERTL-QQIR--RQRRRAQRMANN-----NNQAVPLNNVTQEA----------HPVIIAYDVNKPIREYASASLYDFNTGIAYPT

Query:  FEEHTRFEMKSMMLQMIIVA
        FE + RFEMK +MLQM+  A
Subjt:  FEEHTRFEMKSMMLQMIIVA

XP_038887458.1 uncharacterized protein LOC120077591 [Benincasa hispida]5.3e-0944.23Show/hide
Query:  MSEGEEPELNFDPEIERTLQ----QIRRQRRRAQRMANNNNQAVPLNNVTQE--AHPVIIAYDVNKPIREYASASLYDFNTGIAYPTFEEHTRFEMKSMM
        MS   +PE   +PEI+ T +    Q R  RRR     NNNN+A   N         PV +A D N PIR YA+ +LYDF+ GI+ P  EE+ RFE+K +M
Subjt:  MSEGEEPELNFDPEIERTLQ----QIRRQRRRAQRMANNNNQAVPLNNVTQE--AHPVIIAYDVNKPIREYASASLYDFNTGIAYPTFEEHTRFEMKSMM

Query:  LQMI
        +QMI
Subjt:  LQMI

TrEMBL top hitse value%identityAlignment
A0A5A7UDN8 Uncharacterized protein4.8e-0853.23Show/hide
Query:  NNQAVPLNNVTQEAHPVIIAYDVNKPIREYASASLYDFNTGIAYPTFEEHTRFEMKSMMLQM
        NNQ  P    TQE +P  +A+D++KPI+ YAS +LYDFN GIAY  F E+  FE+K +ML M
Subjt:  NNQAVPLNNVTQEAHPVIIAYDVNKPIREYASASLYDFNTGIAYPTFEEHTRFEMKSMMLQM

A0A5A7UXZ2 Retrovirus-related Pol polyprotein from transposon 17.65.5e-1244.55Show/hide
Query:  MSEGEEPELNFDPEIERTLQQIRRQRRRAQR---MANNNNQAVPLNNVTQEAHPVIIAYDVNKPIREYASASLYDFNTGIAYPTFEEHTRFEMKSMMLQM
        MSEGE+P+   D EIER  Q+ RRQR+R QR     + NNQ  P N   Q  +   +A++ ++PIR   S +LY FN GI YP F E+ RF++K +ML +
Subjt:  MSEGEEPELNFDPEIERTLQQIRRQRRRAQR---MANNNNQAVPLNNVTQEAHPVIIAYDVNKPIREYASASLYDFNTGIAYPTFEEHTRFEMKSMMLQM

Query:  I
        +
Subjt:  I

A0A5A7V2U7 Putative disease resistance RPP13-like protein 15.0e-1359.7Show/hide
Query:  MANNNNQAVPLNNVTQEAHPVIIAYDVNKPIREYASASLYDFNTGIAYPTFEEHTRFEMKSMMLQMI
        M N NNQ +P N   Q A+P  +A D ++PIR YAS +LYDFN GIAYPTF E+TRFE+K +MLQ+I
Subjt:  MANNNNQAVPLNNVTQEAHPVIIAYDVNKPIREYASASLYDFNTGIAYPTFEEHTRFEMKSMMLQMI

A0A5D3BVN1 Putative disease resistance RPP13-like protein 17.5e-0952.94Show/hide
Query:  MANNNNQAVPLNNVTQ-EAHPVIIAYDVNKPIREYASASLYDFNTGIAYPTFEEHTRFEMKSMMLQMI
        MA+N N  VPLN+ TQ + +  +IA++++ PIR Y S +LYDFN GIAY  F E+  FE+K +MLQMI
Subjt:  MANNNNQAVPLNNVTQ-EAHPVIIAYDVNKPIREYASASLYDFNTGIAYPTFEEHTRFEMKSMMLQMI

A0A5D3CAB5 Retrovirus-related Pol polyprotein from transposon 17.65.5e-1244.55Show/hide
Query:  MSEGEEPELNFDPEIERTLQQIRRQRRRAQR---MANNNNQAVPLNNVTQEAHPVIIAYDVNKPIREYASASLYDFNTGIAYPTFEEHTRFEMKSMMLQM
        MSEGE+P+   D EIER  Q+ RRQR+R QR     + NNQ  P N   Q  +   +A++ ++PIR   S +LY FN GI YP F E+ RF++K +ML +
Subjt:  MSEGEEPELNFDPEIERTLQQIRRQRRRAQR---MANNNNQAVPLNNVTQEAHPVIIAYDVNKPIREYASASLYDFNTGIAYPTFEEHTRFEMKSMMLQM

Query:  I
        +
Subjt:  I

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCGAGCAAAGTTTATGAGCGAAGGCGAAGAACCTGAACTCAACTTTGACCCTGAGATAGAACGAACTCTTCAACAAATTAGAAGACAAAGGAGACGAGCACAAAGAAT
GGCAAACAACAACAATCAAGCTGTCCCTTTGAATAACGTTACCCAGGAAGCACATCCCGTAATTATTGCCTATGATGTTAACAAACCTATTAGAGAATATGCATCAGCAA
GCTTGTATGATTTTAACACGGGTATCGCTTACCCCACATTCGAGGAACACACAAGATTTGAAATGAAGTCAATGATGTTGCAAATGATCATAGTCGCGCGCCGCGTTCTG
CTGCAAGCTCGAGTCGTCTCTGTTCGCCTCCGTTTTGCGCAAGCCAAGTTGACGTTGTCTCTGTTCGCGTGCCGTGCTATCTTCCATCCTCCACCCAGCAGTCATCGTGC
CGCCTCTGTCGATCCCCTGCTGGCTCAGTTGGAAAACTTTGGAAAGAATTAG
mRNA sequenceShow/hide mRNA sequence
ATGCGAGCAAAGTTTATGAGCGAAGGCGAAGAACCTGAACTCAACTTTGACCCTGAGATAGAACGAACTCTTCAACAAATTAGAAGACAAAGGAGACGAGCACAAAGAAT
GGCAAACAACAACAATCAAGCTGTCCCTTTGAATAACGTTACCCAGGAAGCACATCCCGTAATTATTGCCTATGATGTTAACAAACCTATTAGAGAATATGCATCAGCAA
GCTTGTATGATTTTAACACGGGTATCGCTTACCCCACATTCGAGGAACACACAAGATTTGAAATGAAGTCAATGATGTTGCAAATGATCATAGTCGCGCGCCGCGTTCTG
CTGCAAGCTCGAGTCGTCTCTGTTCGCCTCCGTTTTGCGCAAGCCAAGTTGACGTTGTCTCTGTTCGCGTGCCGTGCTATCTTCCATCCTCCACCCAGCAGTCATCGTGC
CGCCTCTGTCGATCCCCTGCTGGCTCAGTTGGAAAACTTTGGAAAGAATTAG
Protein sequenceShow/hide protein sequence
MRAKFMSEGEEPELNFDPEIERTLQQIRRQRRRAQRMANNNNQAVPLNNVTQEAHPVIIAYDVNKPIREYASASLYDFNTGIAYPTFEEHTRFEMKSMMLQMIIVARRVL
LQARVVSVRLRFAQAKLTLSLFACRAIFHPPPSSHRAASVDPLLAQLENFGKN