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PI0016974 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0016974
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionSmall nuclear ribonucleoprotein G
Genome locationchr08:17641027..17643384
RNA-Seq ExpressionPI0016974
SyntenyPI0016974
Gene Ontology termsGO:0000387 - spliceosomal snRNP assembly (biological process)
GO:0005682 - U5 snRNP (cellular component)
GO:0005685 - U1 snRNP (cellular component)
GO:0005686 - U2 snRNP (cellular component)
GO:0005687 - U4 snRNP (cellular component)
GO:0005689 - U12-type spliceosomal complex (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0034719 - SMN-Sm protein complex (cellular component)
GO:0043186 - P granule (cellular component)
GO:0071004 - U2-type prespliceosome (cellular component)
GO:0071011 - precatalytic spliceosome (cellular component)
GO:0071013 - catalytic step 2 spliceosome (cellular component)
GO:0097526 - spliceosomal tri-snRNP complex (cellular component)
GO:0003723 - RNA binding (molecular function)
InterPro domainsIPR044641 - Sm-like protein Lsm7/SmG
IPR034098 - Small nuclear ribonucleoprotein G
IPR010920 - LSM domain superfamily
IPR001163 - LSM domain, eukaryotic/archaea-type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6595179.1 putative small nuclear ribonucleoprotein G, partial [Cucurbita argyrosperma subsp. sororia]3.1e-3496.25Show/hide
Query:  MSRSGQPPDLKKYMDKKLQIKLNANRLVIGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEALEPVNRMQ
        MSRSGQPPDLKKYMDKKLQIK+NANRLV+GTLRGFDQFMNLVVDNTVEVNGNEKT+IGMVVIRGNSVVTVEALEPVNRMQ
Subjt:  MSRSGQPPDLKKYMDKKLQIKLNANRLVIGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEALEPVNRMQ

XP_004143329.1 probable small nuclear ribonucleoprotein G [Cucumis sativus]4.7e-35100Show/hide
Query:  MSRSGQPPDLKKYMDKKLQIKLNANRLVIGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEALEPVNRMQ
        MSRSGQPPDLKKYMDKKLQIKLNANRLVIGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEALEPVNRMQ
Subjt:  MSRSGQPPDLKKYMDKKLQIKLNANRLVIGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEALEPVNRMQ

XP_012468163.1 PREDICTED: probable small nuclear ribonucleoprotein G [Gossypium raimondii]3.1e-3497.5Show/hide
Query:  MSRSGQPPDLKKYMDKKLQIKLNANRLVIGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEALEPVNRMQ
        MSRSGQPPDLKKYMDKKLQIKLNANRLV+GTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEALEPV RMQ
Subjt:  MSRSGQPPDLKKYMDKKLQIKLNANRLVIGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEALEPVNRMQ

XP_022132404.1 probable small nuclear ribonucleoprotein G [Momordica charantia]2.3e-3498.75Show/hide
Query:  MSRSGQPPDLKKYMDKKLQIKLNANRLVIGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEALEPVNRMQ
        MSRSGQPPDLKKYMDKKLQIKLNANRLVIGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEALEPVNR Q
Subjt:  MSRSGQPPDLKKYMDKKLQIKLNANRLVIGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEALEPVNRMQ

XP_023517274.1 probable small nuclear ribonucleoprotein G [Cucurbita pepo subsp. pepo]1.0e-3497.5Show/hide
Query:  MSRSGQPPDLKKYMDKKLQIKLNANRLVIGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEALEPVNRMQ
        MSRSGQPPDLKKYMDKKLQIK+NANRLV+GTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEALEPVNRMQ
Subjt:  MSRSGQPPDLKKYMDKKLQIKLNANRLVIGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEALEPVNRMQ

TrEMBL top hitse value%identityAlignment
A0A0A0KHH9 Small nuclear ribonucleoprotein G2.3e-35100Show/hide
Query:  MSRSGQPPDLKKYMDKKLQIKLNANRLVIGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEALEPVNRMQ
        MSRSGQPPDLKKYMDKKLQIKLNANRLVIGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEALEPVNRMQ
Subjt:  MSRSGQPPDLKKYMDKKLQIKLNANRLVIGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEALEPVNRMQ

A0A1S3CHS7 Small nuclear ribonucleoprotein G2.3e-35100Show/hide
Query:  MSRSGQPPDLKKYMDKKLQIKLNANRLVIGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEALEPVNRMQ
        MSRSGQPPDLKKYMDKKLQIKLNANRLVIGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEALEPVNRMQ
Subjt:  MSRSGQPPDLKKYMDKKLQIKLNANRLVIGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEALEPVNRMQ

A0A1U8LJV9 Small nuclear ribonucleoprotein G1.5e-3497.5Show/hide
Query:  MSRSGQPPDLKKYMDKKLQIKLNANRLVIGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEALEPVNRMQ
        MSRSGQPPDLKKYMDKKLQIKLNANRLV+GTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEALEPV RMQ
Subjt:  MSRSGQPPDLKKYMDKKLQIKLNANRLVIGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEALEPVNRMQ

A0A5D3C6A2 Small nuclear ribonucleoprotein G2.3e-35100Show/hide
Query:  MSRSGQPPDLKKYMDKKLQIKLNANRLVIGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEALEPVNRMQ
        MSRSGQPPDLKKYMDKKLQIKLNANRLVIGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEALEPVNRMQ
Subjt:  MSRSGQPPDLKKYMDKKLQIKLNANRLVIGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEALEPVNRMQ

A0A6J1BSY9 Small nuclear ribonucleoprotein G1.1e-3498.75Show/hide
Query:  MSRSGQPPDLKKYMDKKLQIKLNANRLVIGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEALEPVNRMQ
        MSRSGQPPDLKKYMDKKLQIKLNANRLVIGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEALEPVNR Q
Subjt:  MSRSGQPPDLKKYMDKKLQIKLNANRLVIGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEALEPVNRMQ

SwissProt top hitse value%identityAlignment
O82221 Probable small nuclear ribonucleoprotein G6.4e-3593.59Show/hide
Query:  MSRSGQPPDLKKYMDKKLQIKLNANRLVIGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEALEPVNR
        MSRSGQPPDLKKYMDKKLQIKLNANR+V GTLRGFDQFMNLVVDNTVEVNGN+KTDIGMVVIRGNS+VTVEALEPV R
Subjt:  MSRSGQPPDLKKYMDKKLQIKLNANRLVIGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEALEPVNR

P24715 Probable small nuclear ribonucleoprotein G4.3e-3188.16Show/hide
Query:  MSRSGQPPDLKKYMDKKLQIKLNANRLVIGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEALEPV
        MS SGQPP LKKYMDK+LQI L ANR+++GTLRGFDQFMNLVVDNTVEVNGNEK DIGMVVIRGNSVVTVEALEPV
Subjt:  MSRSGQPPDLKKYMDKKLQIKLNANRLVIGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEALEPV

P62308 Small nuclear ribonucleoprotein G1.3e-1661.97Show/hide
Query:  PPDLKKYMDKKLQIKLNANRLVIGTLRGFDQFMNLVVDNTVEV-NGNEKTDIGMVVIRGNSVVTVEALEPV
        PP+LKK+MDKKL +KLN  R V G LRGFD FMNLV+D  VE+    ++ +IGMVVIRGNS++ +EALE V
Subjt:  PPDLKKYMDKKLQIKLNANRLVIGTLRGFDQFMNLVVDNTVEV-NGNEKTDIGMVVIRGNSVVTVEALEPV

Q3ZBL0 Small nuclear ribonucleoprotein G1.3e-1661.97Show/hide
Query:  PPDLKKYMDKKLQIKLNANRLVIGTLRGFDQFMNLVVDNTVEV-NGNEKTDIGMVVIRGNSVVTVEALEPV
        PP+LKK+MDKKL +KLN  R V G LRGFD FMNLV+D  VE+    ++ +IGMVVIRGNS++ +EALE V
Subjt:  PPDLKKYMDKKLQIKLNANRLVIGTLRGFDQFMNLVVDNTVEV-NGNEKTDIGMVVIRGNSVVTVEALEPV

Q9VXE0 Probable small nuclear ribonucleoprotein G2.1e-1763.38Show/hide
Query:  PPDLKKYMDKKLQIKLNANRLVIGTLRGFDQFMNLVVDNTV-EVNGNEKTDIGMVVIRGNSVVTVEALEPV
        PP++KKYMDK++ +KLN  R V G LRGFD FMN+V+D+TV E   N K +IGMVVIRGNS+V VEAL+ V
Subjt:  PPDLKKYMDKKLQIKLNANRLVIGTLRGFDQFMNLVVDNTV-EVNGNEKTDIGMVVIRGNSVVTVEALEPV

Arabidopsis top hitse value%identityAlignment
AT2G03870.1 Small nuclear ribonucleoprotein family protein8.9e-0839.44Show/hide
Query:  DLKKYMDKKLQIKLNANRLVIGTLRGFDQFMNLVVDNTVEV---------NGNEKTDIGMVVIRGNSVVTV
        DL K++DK +Q+KL   R V GTL+G+DQ +NLV+D  VE            ++   +G++V RG +V+ V
Subjt:  DLKKYMDKKLQIKLNANRLVIGTLRGFDQFMNLVVDNTVEV---------NGNEKTDIGMVVIRGNSVVTV

AT2G03870.2 Small nuclear ribonucleoprotein family protein8.9e-0839.44Show/hide
Query:  DLKKYMDKKLQIKLNANRLVIGTLRGFDQFMNLVVDNTVEV---------NGNEKTDIGMVVIRGNSVVTV
        DL K++DK +Q+KL   R V GTL+G+DQ +NLV+D  VE            ++   +G++V RG +V+ V
Subjt:  DLKKYMDKKLQIKLNANRLVIGTLRGFDQFMNLVVDNTVEV---------NGNEKTDIGMVVIRGNSVVTV

AT2G23930.1 probable small nuclear ribonucleoprotein G4.5e-3693.59Show/hide
Query:  MSRSGQPPDLKKYMDKKLQIKLNANRLVIGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEALEPVNR
        MSRSGQPPDLKKYMDKKLQIKLNANR+V GTLRGFDQFMNLVVDNTVEVNGN+KTDIGMVVIRGNS+VTVEALEPV R
Subjt:  MSRSGQPPDLKKYMDKKLQIKLNANRLVIGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEALEPVNR

AT2G23930.2 probable small nuclear ribonucleoprotein G5.9e-2892.31Show/hide
Query:  MDKKLQIKLNANRLVIGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEALEPVNR
        MDKKLQIKLNANR+V GTLRGFDQFMNLVVDNTVEVNGN+KTDIGMVVIRGNS+VTVEALEPV R
Subjt:  MDKKLQIKLNANRLVIGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEALEPVNR

AT3G11500.1 Small nuclear ribonucleoprotein family protein5.9e-3692.31Show/hide
Query:  MSRSGQPPDLKKYMDKKLQIKLNANRLVIGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEALEPVNR
        MSRSGQPPDLKKYMDKKLQIKLNANR+V+GTLRGFDQFMNLVVDNTVEVNG++KTDIGMVVIRGNS+VTVEALEPV R
Subjt:  MSRSGQPPDLKKYMDKKLQIKLNANRLVIGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEALEPVNR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGTAGGTCAGGACAGCCTCCGGATCTAAAAAAATATATGGACAAAAAGCTTCAGATAAAACTCAATGCTAATCGCTTGGTAATTGGAACTCTTCGAGGCTTTGACCA
ATTTATGAATCTAGTGGTTGACAACACCGTGGAAGTGAATGGCAACGAGAAAACTGATATTGGCATGGTGGTGATTAGAGGAAATAGTGTGGTCACTGTTGAAGCACTTG
AACCTGTAAACAGGATGCAGTGA
mRNA sequenceShow/hide mRNA sequence
TTCACATCTCTTTCTTTCGTGCTTCACCATGAGTAGGTCAGGACAGCCTCCGGATCTAAAAAAATATATGGACAAAAAGCTTCAGATAAAACTCAATGCTAATCGCTTGG
TAATTGGAACTCTTCGAGGCTTTGACCAATTTATGAATCTAGTGGTTGACAACACCGTGGAAGTGAATGGCAACGAGAAAACTGATATTGGCATGGTGGTGATTAGAGGA
AATAGTGTGGTCACTGTTGAAGCACTTGAACCTGTAAACAGGATGCAGTGATTGCAAACGTGTTGGAAGTTGGTTCGATTCTTGCTTCTGATCTGTTTCATAGATCGAGT
GAGTTAAACATTCGGAATTGTAGTATGTATAATTTTGGAATGTTATGGATTTAGATGGAATTCTTGTACTCCCATCATTCTGGACAGTAAGGATTATAATTTCAGCAATG
GGGTTTCTGTATTATTCTGGGAAAGAGAGATTCATTGCATTAGGGGTAAGATTTTTCTCACAAAACCTTACATTCTCTCTTCCGCCACAGCACCAAAATCCAAATTATAT
TCGTTCCAAGTCTGAGTGCCACTGTATCATTTCGAAATATGCTCATTAATCTTTATATAGAGAATCCAAAAAAGATAGTTTCAACGGAGTTTGTTGCCAAATCGACCAAT
TTTATACATGTCTTCTCCTCCATTGTAAGTTTTGAAGATACTACCGTAACCTGCTAGTGATTGAAGTTCTTTGCTAGAAGTTCATATATTACATTGTAAAGGCGTATTGG
GCTAAAGTTGATTATAATTCTTAGAGTGTAGTTTATATTTGGAAATGTGGATTGTTATGTTTTCGGTCGGTTCTTTTGCAATCATAATTGTAAAAAATGAACCATAGAAA
GTTTTTCAGTGTTTAACAGTATTTAATAGTGGTTTTGAGTAATTTTGAGTATAAGAATTGTGTTTCTATTTATGAGAAATTTTGAGTATAAGAATTGTGATTTTAGAAGT
GTTAGATTAGACATTGAATTGAATGTACTAAAGGGATCTTAATCATTTAAAATGTACCTCTAAATATGTTTTATTGTTCTAGTTCGGGAAGGAATCTCATCAATGTCTTT
AAAAGCTTCTAATCCTAATATTTTGTTATCGAAGCAGGGATATACACCACCAGACATGATGCAATCTACAGTCTATTGGCATGAGTAGATCTATGGGTGTTAATCCATAG
ACTTTCACCAGAGTCAATTGTAATTTATATACATTATTCTCTTAATGAAACTCGTCTGTGGCTCTGTTCATGTTATTAGCCCTCTTATGAAACCATCACACATTCAGTAA
AGTTCCAAGTTCGAGGACTAAGAGATACGCAACGAGGACTTCATTTACTCTCTAAACAAAATTAAAGAAGTCCATGATTCTACCAATAATCTTTACAAGAA
Protein sequenceShow/hide protein sequence
MSRSGQPPDLKKYMDKKLQIKLNANRLVIGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEALEPVNRMQ