CuGenDBv2

Gene ID	PI0017002
Organism	Cucumis metuliferus PI 482460 (Melon (PI 482460) v1)
Description	Ribosomal protein
Genome location	chr02:19089509..19092718
RNA-Seq Expression	PI0017002
Synteny	PI0017002
Gene Ontology terms	GO:0006412 - translation (biological process) GO:0005840 - ribosome (cellular component) GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domains	IPR000473 - Ribosomal protein L36 IPR035977 - Ribosomal protein L36 superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

KAG7023520.1 rpmJ, partial [Cucurbita argyrosperma subsp. argyrosperma]

1.7e-41

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Query:  MKVRSSVKKMCEFCRTVKRRGRVYIYCSSNPKHKQRQGLSTFASEGPSPSLFSRTEVKQEILPSQSSRTGLACLIPQKNQPTMLLGWRMGLASILLKKHN
        MKVR+SVKKMCEFCRTVKRRGRVY+YCSSNPKHKQRQGLST ASEGPSP LF  +EVKQEILPS SSRTGLA L+PQK++PTML+GWRMGLASILLKKHN
Subjt:  MKVRSSVKKMCEFCRTVKRRGRVYIYCSSNPKHKQRQGLSTFASEGPSPSLFSRTEVKQEILPSQSSRTGLACLIPQKNQPTMLLGWRMGLASILLKKHN

XP_004150587.2 uncharacterized protein LOC101223220 [Cucumis sativus]

8.6e-46

95.05

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Query:  AMKVRSSVKKMCEFCRTVKRRGRVYIYCSSNPKHKQRQGLSTFASEGPSPSLFSRTEVKQEILPSQSSRTGLACLIPQKNQPTMLLGWRMGLASILLKKH
        AMKVRSSVKKMCEFCRTVKR+GRVYIYCSSNPKHKQRQGLSTFASEGPSPSLFSRTEVKQEILPSQS RTGLA LIPQKN+PTM LGWRMGLASILLKKH
Subjt:  AMKVRSSVKKMCEFCRTVKRRGRVYIYCSSNPKHKQRQGLSTFASEGPSPSLFSRTEVKQEILPSQSSRTGLACLIPQKNQPTMLLGWRMGLASILLKKH

Query:  N
        N
Subjt:  N

XP_008443993.2 PREDICTED: uncharacterized protein LOC103487446 [Cucumis melo]

9.5e-45

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Query:  MKVRSSVKKMCEFCRTVKRRGRVYIYCSSNPKHKQRQGLSTFASEGPSPSLFSRTEVKQEILPSQSSRTGLACLIPQKNQPTMLLGWRMGLASILLKKHN
        MKVRSSVKKMCEFCRTVKR+GRVYIYCSSNPKHKQRQGLSTFA EGPSPSLFSRTEVKQEILPSQ SR GLA LIPQKN+PTMLLGWRMGLASILLKKHN
Subjt:  MKVRSSVKKMCEFCRTVKRRGRVYIYCSSNPKHKQRQGLSTFASEGPSPSLFSRTEVKQEILPSQSSRTGLACLIPQKNQPTMLLGWRMGLASILLKKHN

XP_022144930.1 uncharacterized protein LOC111014487 [Momordica charantia]

2.0e-42

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Query:  MKVRSSVKKMCEFCRTVKRRGRVYIYCSSNPKHKQRQGLSTFASEGPSPSLFSRTEVKQEILPSQSSRTGLACLIPQKNQPTMLLGWRMGLASILLKKHN
        MKVRSSVKKMCEFCRTVKRRGRVY+YCSSNPKHKQRQGLSTFASEGPSP LFSR+EVKQEILPS S RTGLA LIPQK++PT + GWRMGLASILLKKHN
Subjt:  MKVRSSVKKMCEFCRTVKRRGRVYIYCSSNPKHKQRQGLSTFASEGPSPSLFSRTEVKQEILPSQSSRTGLACLIPQKNQPTMLLGWRMGLASILLKKHN

XP_038879717.1 uncharacterized protein LOC120071478 [Benincasa hispida]

5.2e-43

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Query:  MKVRSSVKKMCEFCRTVKRRGRVYIYCSSNPKHKQRQGLSTFASEGPSPSLFSRTEVKQEILPSQSSRTGLACLIPQKNQPTMLLGWRMGLASILLKKHN
        MKVR+SVKKMCEFCRTVKRRGRVY+YCSSNPKHKQRQGLSTFASEGP PSLFSR+EVKQE+LPS SSRTGLA LIPQK++PTMLLGWRMGLASILLKK N
Subjt:  MKVRSSVKKMCEFCRTVKRRGRVYIYCSSNPKHKQRQGLSTFASEGPSPSLFSRTEVKQEILPSQSSRTGLACLIPQKNQPTMLLGWRMGLASILLKKHN

TrEMBL top hits

e value

%identity

Alignment

A0A1S3B8W2 Ribosomal protein

4.6e-45

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Query:  MKVRSSVKKMCEFCRTVKRRGRVYIYCSSNPKHKQRQGLSTFASEGPSPSLFSRTEVKQEILPSQSSRTGLACLIPQKNQPTMLLGWRMGLASILLKKHN
        MKVRSSVKKMCEFCRTVKR+GRVYIYCSSNPKHKQRQGLSTFA EGPSPSLFSRTEVKQEILPSQ SR GLA LIPQKN+PTMLLGWRMGLASILLKKHN
Subjt:  MKVRSSVKKMCEFCRTVKRRGRVYIYCSSNPKHKQRQGLSTFASEGPSPSLFSRTEVKQEILPSQSSRTGLACLIPQKNQPTMLLGWRMGLASILLKKHN

A0A5A7U4L3 Ribosomal protein

4.6e-45

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Query:  MKVRSSVKKMCEFCRTVKRRGRVYIYCSSNPKHKQRQGLSTFASEGPSPSLFSRTEVKQEILPSQSSRTGLACLIPQKNQPTMLLGWRMGLASILLKKHN
        MKVRSSVKKMCEFCRTVKR+GRVYIYCSSNPKHKQRQGLSTFA EGPSPSLFSRTEVKQEILPSQ SR GLA LIPQKN+PTMLLGWRMGLASILLKKHN
Subjt:  MKVRSSVKKMCEFCRTVKRRGRVYIYCSSNPKHKQRQGLSTFASEGPSPSLFSRTEVKQEILPSQSSRTGLACLIPQKNQPTMLLGWRMGLASILLKKHN

A0A6J1CT08 Ribosomal protein

9.6e-43

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Query:  MKVRSSVKKMCEFCRTVKRRGRVYIYCSSNPKHKQRQGLSTFASEGPSPSLFSRTEVKQEILPSQSSRTGLACLIPQKNQPTMLLGWRMGLASILLKKHN
        MKVRSSVKKMCEFCRTVKRRGRVY+YCSSNPKHKQRQGLSTFASEGPSP LFSR+EVKQEILPS S RTGLA LIPQK++PT + GWRMGLASILLKKHN
Subjt:  MKVRSSVKKMCEFCRTVKRRGRVYIYCSSNPKHKQRQGLSTFASEGPSPSLFSRTEVKQEILPSQSSRTGLACLIPQKNQPTMLLGWRMGLASILLKKHN

A0A6J1EZS5 Ribosomal protein

1.1e-41

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Query:  MKVRSSVKKMCEFCRTVKRRGRVYIYCSSNPKHKQRQGLSTFASEGPSPSLFSRTEVKQEILPSQSSRTGLACLIPQKNQPTMLLGWRMGLASILLKKHN
        MKVR+SVKKMCEFCRTV+RRGRVYIYCS+NPKHKQRQGLSTFASE PSPSLFSR+EVKQEILPS SSRTGLA LIPQK++PTML GWRMGLASIL KK N
Subjt:  MKVRSSVKKMCEFCRTVKRRGRVYIYCSSNPKHKQRQGLSTFASEGPSPSLFSRTEVKQEILPSQSSRTGLACLIPQKNQPTMLLGWRMGLASILLKKHN

A0A6J1JBN8 Ribosomal protein

1.4e-41

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Query:  MKVRSSVKKMCEFCRTVKRRGRVYIYCSSNPKHKQRQGLSTFASEGPSPSLFSRTEVKQEILPSQSSRTGLACLIPQKNQPTMLLGWRMGLASILLKKHN
        MKVR+SVKKMCEFCRTVKRRGRVY+YCSSNPKHKQRQGLST ASEGPSP LF  +EVKQEILPS SSRTGLA L+PQK++PTML GWRMGLASILLKKHN
Subjt:  MKVRSSVKKMCEFCRTVKRRGRVYIYCSSNPKHKQRQGLSTFASEGPSPSLFSRTEVKQEILPSQSSRTGLACLIPQKNQPTMLLGWRMGLASILLKKHN

SwissProt top hits

e value

%identity

Alignment

A5VLI2 50S ribosomal protein L36

1.3e-09

76.32

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Query:  MKVRSSVKKMCEFCRTVKRRGRVYIYCSSNPKHKQRQG
        MKVR SVKKMCE C+ VKR GRV + CS+NPKHKQRQG
Subjt:  MKVRSSVKKMCEFCRTVKRRGRVYIYCSSNPKHKQRQG

B2G8V5 50S ribosomal protein L36

1.3e-09

76.32

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Query:  MKVRSSVKKMCEFCRTVKRRGRVYIYCSSNPKHKQRQG
        MKVR SVKKMCE C+ VKR GRV + CS+NPKHKQRQG
Subjt:  MKVRSSVKKMCEFCRTVKRRGRVYIYCSSNPKHKQRQG

B3WAJ5 50S ribosomal protein L36

1.0e-09

76.32

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Query:  MKVRSSVKKMCEFCRTVKRRGRVYIYCSSNPKHKQRQG
        MKVR SVKKMCE C+ V+R+GRV I CS+NPKHKQRQG
Subjt:  MKVRSSVKKMCEFCRTVKRRGRVYIYCSSNPKHKQRQG

P73300 50S ribosomal protein L36

7.9e-10

73.68

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Query:  MKVRSSVKKMCEFCRTVKRRGRVYIYCSSNPKHKQRQG
        MKVR+SVKKMC+ CR ++RRGRV + CS+NPKHKQRQG
Subjt:  MKVRSSVKKMCEFCRTVKRRGRVYIYCSSNPKHKQRQG

Q035A6 50S ribosomal protein L36

1.0e-09

76.32

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Query:  MKVRSSVKKMCEFCRTVKRRGRVYIYCSSNPKHKQRQG
        MKVR SVKKMCE C+ V+R+GRV I CS+NPKHKQRQG
Subjt:  MKVRSSVKKMCEFCRTVKRRGRVYIYCSSNPKHKQRQG

Arabidopsis top hits

e value

%identity

Alignment

AT5G20180.1 Ribosomal protein L36

6.0e-29

64.08

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Query:  MKVRSSVKKMCEFCRTVKRRGRVYIYCSSNPKHKQRQGLSTFASEGPSPS-LFSRTEVKQEI--LPSQSSRTGLACLIPQKNQPTMLLGWRMGLASILLK
        MKVRSSVKKMCEFC+TVKRRGRVY+ CSSNPKHKQRQG S+FA EG +PS LF+     QE+  LP Q    GLA L+ ++  PT   GWR GLASIL K
Subjt:  MKVRSSVKKMCEFCRTVKRRGRVYIYCSSNPKHKQRQGLSTFASEGPSPS-LFSRTEVKQEI--LPSQSSRTGLACLIPQKNQPTMLLGWRMGLASILLK

Query:  KHN
        + N
Subjt:  KHN

AT5G20180.2 Ribosomal protein L36

6.0e-29

64.08

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Query:  MKVRSSVKKMCEFCRTVKRRGRVYIYCSSNPKHKQRQGLSTFASEGPSPS-LFSRTEVKQEI--LPSQSSRTGLACLIPQKNQPTMLLGWRMGLASILLK
        MKVRSSVKKMCEFC+TVKRRGRVY+ CSSNPKHKQRQG S+FA EG +PS LF+     QE+  LP Q    GLA L+ ++  PT   GWR GLASIL K
Subjt:  MKVRSSVKKMCEFCRTVKRRGRVYIYCSSNPKHKQRQGLSTFASEGPSPS-LFSRTEVKQEI--LPSQSSRTGLACLIPQKNQPTMLLGWRMGLASILLK

Query:  KHN
        + N
Subjt:  KHN

ATCG00760.1 ribosomal protein L36

2.0e-08

63.16

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Query:  MKVRSSVKKMCEFCRTVKRRGRVYIYCSSNPKHKQRQG
        MK+R+SV+K+CE CR ++RRGR+ + C SNP+HKQRQG
Subjt:  MKVRSSVKKMCEFCRTVKRRGRVYIYCSSNPKHKQRQG

Sequences

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CDS sequence

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mRNA sequence

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ATGTTTGCTTCTCCAACTTCTGCTGACCGTCGCTCTCGATCCGAAGCCATGAAAGTCCGTTCTTCGGTGAAAAAAATGTGCGAGTTTTGTAGGACAGTGAAGCGTCGAGG
CCGAGTATATATATACTGCTCATCTAATCCCAAACACAAGCAACGCCAGGGCCTGTCTACATTTGCAAGTGAAGGTCCTTCTCCTTCCTTGTTCTCAAGAACTGAGGTGA
AGCAAGAGATTCTTCCCAGTCAAAGCTCGCGAACGGGGCTGGCTTGTCTCATCCCCCAAAAGAACCAGCCAACAATGTTGCTTGGTTGGAGAATGGGTCTGGCTTCAATC
CTGTTGAAGAAACACAATTAGCTTAGTAGTAAACAAAAGGAAGAAAGAATATTAGTTATTGGTTTCTCTTTGACCTTTCATTGGCAATACCAGTATTTTCAACTAGGATT
CTGCTCCTAAAAAGAAATAAGCACTGCTGCTCTGAGTTTTTTTCTGTTTGAGTTGGTTTCGATATTTAGAATTGGAGGAAGAGGTGGTGTTACATCGAATATCATAATTG
TGTTTGCTTGGTTGTTGTACTGATCTGCTAGCCATCTATAATGTTGTGATTTTCAATCCTCAA

Protein sequence

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MFASPTSADRRSRSEAMKVRSSVKKMCEFCRTVKRRGRVYIYCSSNPKHKQRQGLSTFASEGPSPSLFSRTEVKQEILPSQSSRTGLACLIPQKNQPTMLLGWRMGLASI
LLKKHN

PI0017002 (gene) of Melon (PI 482460) v1 genome