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PI0017023 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0017023
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrotransposon gag protein
Genome locationchr01:17196486..17197093
RNA-Seq ExpressionPI0017023
SyntenyPI0017023
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
ADN33993.1 retrotransposon gag protein [Cucumis melo subsp. melo]3.7e-6074.17Show/hide
Query:  MTTLLTSFVQGGNVKVAKCEVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWGNDAQRPAQATSSSNNQGSNLEDLVKALATNTISFQ
        MTTLLTSFVQG  +KV KC VC L+GHPNDKCP+++E+ N++RKYDP+GNTYN+GWRDNPNLRWGND Q+  QA  +S+NQG+NLED++KALATNT+SFQ
Subjt:  MTTLLTSFVQGGNVKVAKCEVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWGNDAQRPAQATSSSNNQGSNLEDLVKALATNTISFQ

Query:  NEMKQQMSQLTNAISKLEGKGKLPAQPDHANVSVISLRSGKILQTPPSEEK
         EMKQQM+QLT AISK++GKGKLPAQPD+ANVS ISLRSGKIL TP ++EK
Subjt:  NEMKQQMSQLTNAISKLEGKGKLPAQPDHANVSVISLRSGKILQTPPSEEK

KAA0047407.1 retrotransposon gag protein [Cucumis melo var. makuwa]8.1e-6073.51Show/hide
Query:  MTTLLTSFVQGGNVKVAKCEVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWGNDAQRPAQATSSSNNQGSNLEDLVKALATNTISFQ
        MTTLLTSFVQG  +KV KC VCGL+GHPNDKCP+++E+ N++RKYDPHGNTYN+GWRDNPNLRWGND Q+  QA S+S+NQG+NLED++KALATNT+SFQ
Subjt:  MTTLLTSFVQGGNVKVAKCEVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWGNDAQRPAQATSSSNNQGSNLEDLVKALATNTISFQ

Query:  NEMKQQMSQLTNAISKLEGKGKLPAQPDHANVSVISLRSGKILQTPPSEEK
         EMKQQM+QLT AISK++GKGKL AQ ++ANVS +SLRSGKIL TP ++EK
Subjt:  NEMKQQMSQLTNAISKLEGKGKLPAQPDHANVSVISLRSGKILQTPPSEEK

TYK07549.1 retrotransposon gag protein [Cucumis melo var. makuwa]1.4e-5974.17Show/hide
Query:  MTTLLTSFVQGGNVKVAKCEVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWGNDAQRPAQATSSSNNQGSNLEDLVKALATNTISFQ
        MTTLLTSFVQG   KV KC VCGL+GHPNDKCP ++E+ N++R+YDPH NTYN+GWRDN NLRWGND Q+  QA S+S+NQG+NLED++KALATNT+SFQ
Subjt:  MTTLLTSFVQGGNVKVAKCEVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWGNDAQRPAQATSSSNNQGSNLEDLVKALATNTISFQ

Query:  NEMKQQMSQLTNAISKLEGKGKLPAQPDHANVSVISLRSGKILQTPPSEEK
         +MKQQM+QLT AISK++GKGKLPAQPDHANVS ISLRSGKIL TP ++EK
Subjt:  NEMKQQMSQLTNAISKLEGKGKLPAQPDHANVSVISLRSGKILQTPPSEEK

TYK10613.1 retrotransposon gag protein [Cucumis melo var. makuwa]7.4e-6174.83Show/hide
Query:  MTTLLTSFVQGGNVKVAKCEVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWGNDAQRPAQATSSSNNQGSNLEDLVKALATNTISFQ
        MTTLLTSFVQG   KV KC VCGL+GHPNDKCP+++E+ N++R+YDPHGNTYN GWRD PNLRWGND Q   QA S+S+NQG+NLED++KAL TNT+SFQ
Subjt:  MTTLLTSFVQGGNVKVAKCEVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWGNDAQRPAQATSSSNNQGSNLEDLVKALATNTISFQ

Query:  NEMKQQMSQLTNAISKLEGKGKLPAQPDHANVSVISLRSGKILQTPPSEEK
         EMKQQM+QLT AISK++GKGKLPAQPDHANVS ISLRSGKIL TP ++EK
Subjt:  NEMKQQMSQLTNAISKLEGKGKLPAQPDHANVSVISLRSGKILQTPPSEEK

XP_008465649.1 PREDICTED: uncharacterized protein LOC103503291, partial [Cucumis melo]1.8e-5972.85Show/hide
Query:  MTTLLTSFVQGGNVKVAKCEVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWGNDAQRPAQATSSSNNQGSNLEDLVKALATNTISFQ
        MTTLLTSFVQG  +KV KC VCGL+G+PNDKCP ++E+ N++R+YDPHGNTYN GWRDNPNLRWGND Q+  QA  +S+NQG+NLED++KALATNT+SFQ
Subjt:  MTTLLTSFVQGGNVKVAKCEVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWGNDAQRPAQATSSSNNQGSNLEDLVKALATNTISFQ

Query:  NEMKQQMSQLTNAISKLEGKGKLPAQPDHANVSVISLRSGKILQTPPSEEK
         +MKQQM+QLT  ISK++GKGKLPAQPDH NVS ISLRSGKIL TP ++EK
Subjt:  NEMKQQMSQLTNAISKLEGKGKLPAQPDHANVSVISLRSGKILQTPPSEEK

TrEMBL top hitse value%identityAlignment
A0A1S3CQU8 uncharacterized protein LOC1035032918.8e-6072.85Show/hide
Query:  MTTLLTSFVQGGNVKVAKCEVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWGNDAQRPAQATSSSNNQGSNLEDLVKALATNTISFQ
        MTTLLTSFVQG  +KV KC VCGL+G+PNDKCP ++E+ N++R+YDPHGNTYN GWRDNPNLRWGND Q+  QA  +S+NQG+NLED++KALATNT+SFQ
Subjt:  MTTLLTSFVQGGNVKVAKCEVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWGNDAQRPAQATSSSNNQGSNLEDLVKALATNTISFQ

Query:  NEMKQQMSQLTNAISKLEGKGKLPAQPDHANVSVISLRSGKILQTPPSEEK
         +MKQQM+QLT  ISK++GKGKLPAQPDH NVS ISLRSGKIL TP ++EK
Subjt:  NEMKQQMSQLTNAISKLEGKGKLPAQPDHANVSVISLRSGKILQTPPSEEK

A0A5D3CB46 Retrotransposon gag protein6.7e-6074.17Show/hide
Query:  MTTLLTSFVQGGNVKVAKCEVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWGNDAQRPAQATSSSNNQGSNLEDLVKALATNTISFQ
        MTTLLTSFVQG   KV KC VCGL+GHPNDKCP ++E+ N++R+YDPH NTYN+GWRDN NLRWGND Q+  QA S+S+NQG+NLED++KALATNT+SFQ
Subjt:  MTTLLTSFVQGGNVKVAKCEVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWGNDAQRPAQATSSSNNQGSNLEDLVKALATNTISFQ

Query:  NEMKQQMSQLTNAISKLEGKGKLPAQPDHANVSVISLRSGKILQTPPSEEK
         +MKQQM+QLT AISK++GKGKLPAQPDHANVS ISLRSGKIL TP ++EK
Subjt:  NEMKQQMSQLTNAISKLEGKGKLPAQPDHANVSVISLRSGKILQTPPSEEK

A0A5D3CFE7 Retrotransposon gag protein3.6e-6174.83Show/hide
Query:  MTTLLTSFVQGGNVKVAKCEVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWGNDAQRPAQATSSSNNQGSNLEDLVKALATNTISFQ
        MTTLLTSFVQG   KV KC VCGL+GHPNDKCP+++E+ N++R+YDPHGNTYN GWRD PNLRWGND Q   QA S+S+NQG+NLED++KAL TNT+SFQ
Subjt:  MTTLLTSFVQGGNVKVAKCEVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWGNDAQRPAQATSSSNNQGSNLEDLVKALATNTISFQ

Query:  NEMKQQMSQLTNAISKLEGKGKLPAQPDHANVSVISLRSGKILQTPPSEEK
         EMKQQM+QLT AISK++GKGKLPAQPDHANVS ISLRSGKIL TP ++EK
Subjt:  NEMKQQMSQLTNAISKLEGKGKLPAQPDHANVSVISLRSGKILQTPPSEEK

A0A5D3CRR8 Retrotransposon gag protein3.9e-6073.51Show/hide
Query:  MTTLLTSFVQGGNVKVAKCEVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWGNDAQRPAQATSSSNNQGSNLEDLVKALATNTISFQ
        MTTLLTSFVQG  +KV KC VCGL+GHPNDKCP+++E+ N++RKYDPHGNTYN+GWRDNPNLRWGND Q+  QA S+S+NQG+NLED++KALATNT+SFQ
Subjt:  MTTLLTSFVQGGNVKVAKCEVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWGNDAQRPAQATSSSNNQGSNLEDLVKALATNTISFQ

Query:  NEMKQQMSQLTNAISKLEGKGKLPAQPDHANVSVISLRSGKILQTPPSEEK
         EMKQQM+QLT AISK++GKGKL AQ ++ANVS +SLRSGKIL TP ++EK
Subjt:  NEMKQQMSQLTNAISKLEGKGKLPAQPDHANVSVISLRSGKILQTPPSEEK

E5GBZ4 Retrotransposon gag protein1.8e-6074.17Show/hide
Query:  MTTLLTSFVQGGNVKVAKCEVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWGNDAQRPAQATSSSNNQGSNLEDLVKALATNTISFQ
        MTTLLTSFVQG  +KV KC VC L+GHPNDKCP+++E+ N++RKYDP+GNTYN+GWRDNPNLRWGND Q+  QA  +S+NQG+NLED++KALATNT+SFQ
Subjt:  MTTLLTSFVQGGNVKVAKCEVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWGNDAQRPAQATSSSNNQGSNLEDLVKALATNTISFQ

Query:  NEMKQQMSQLTNAISKLEGKGKLPAQPDHANVSVISLRSGKILQTPPSEEK
         EMKQQM+QLT AISK++GKGKLPAQPD+ANVS ISLRSGKIL TP ++EK
Subjt:  NEMKQQMSQLTNAISKLEGKGKLPAQPDHANVSVISLRSGKILQTPPSEEK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACTACATTGCTTACTTCTTTCGTACAAGGTGGAAATGTGAAAGTTGCAAAATGTGAAGTTTGTGGTCTAATAGGACATCCTAATGACAAGTGTCCCGACCTTGTGGA
AGAGGCAAATGTCATTAGGAAGTACGATCCTCATGGAAACACTTACAATGCCGGTTGGAGAGACAACCCTAACCTTAGATGGGGAAATGACGCCCAACGACCCGCACAAG
CAACTTCATCCTCAAATAATCAAGGTAGTAATTTGGAAGATTTGGTAAAAGCTCTTGCTACCAACACAATTTCTTTCCAAAATGAAATGAAGCAACAAATGTCCCAATTA
ACCAACGCAATAAGCAAACTAGAAGGTAAAGGCAAGCTTCCAGCTCAGCCCGATCACGCAAATGTAAGTGTCATCTCGCTTAGAAGCGGTAAAATCTTGCAAACCCCTCC
AAGCGAAGAAAAGATTGGCCCCTAA
mRNA sequenceShow/hide mRNA sequence
ATGACTACATTGCTTACTTCTTTCGTACAAGGTGGAAATGTGAAAGTTGCAAAATGTGAAGTTTGTGGTCTAATAGGACATCCTAATGACAAGTGTCCCGACCTTGTGGA
AGAGGCAAATGTCATTAGGAAGTACGATCCTCATGGAAACACTTACAATGCCGGTTGGAGAGACAACCCTAACCTTAGATGGGGAAATGACGCCCAACGACCCGCACAAG
CAACTTCATCCTCAAATAATCAAGGTAGTAATTTGGAAGATTTGGTAAAAGCTCTTGCTACCAACACAATTTCTTTCCAAAATGAAATGAAGCAACAAATGTCCCAATTA
ACCAACGCAATAAGCAAACTAGAAGGTAAAGGCAAGCTTCCAGCTCAGCCCGATCACGCAAATGTAAGTGTCATCTCGCTTAGAAGCGGTAAAATCTTGCAAACCCCTCC
AAGCGAAGAAAAGATTGGCCCCTAA
Protein sequenceShow/hide protein sequence
MTTLLTSFVQGGNVKVAKCEVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWGNDAQRPAQATSSSNNQGSNLEDLVKALATNTISFQNEMKQQMSQL
TNAISKLEGKGKLPAQPDHANVSVISLRSGKILQTPPSEEKIGP