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PI0017032 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0017032
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrotransposon protein
Genome locationchr02:14161744..14162445
RNA-Seq ExpressionPI0017032
SyntenyPI0017032
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0036791.1 retrotransposon protein [Cucumis melo var. makuwa]5.9e-3549.16Show/hide
Query:  MTTSSRTLKHHWTKEEDATLVECLVELVSACGW-----------------------------------------------SHPAAKGLLNKLFPHYDDLC
        MT+SSR  KH WTKEE+A LVECLVELV+  GW                                               SHPAAKGLLNKLF HYD+L 
Subjt:  MTTSSRTLKHHWTKEEDATLVECLVELVSACGW-----------------------------------------------SHPAAKGLLNKLFPHYDDLC

Query:  YIFGRDCATGGRAETFTDVGSNVPVGYDGFPAYDGNDMEFSTMYSQGLDMSPDNIMGTRPGRLSEGRVGLSDSKRKRGG
        Y+FG+D +TGGR E+F D+GSN P GYD F A    D +F +MYSQGL+MSPD++MGTR  R+SE R   S SKRKR G
Subjt:  YIFGRDCATGGRAETFTDVGSNVPVGYDGFPAYDGNDMEFSTMYSQGLDMSPDNIMGTRPGRLSEGRVGLSDSKRKRGG

KAA0040490.1 retrotransposon protein [Cucumis melo var. makuwa]1.3e-3456.85Show/hide
Query:  MTTSSRTLKHHWTKEEDATLVECLVELVSACGW---------------SHPAAKGLLNKLFPHYDDLCYIFGRDCATGGRAETFTDVGSNVPVGYDGFPA
        M+TS+R  +H WTKEE+ TLVECL+ELV   GW               SHPAAKGLLNKLFP+YD+  Y+FGRD ATG  A+TF DVGSN P GYD F  
Subjt:  MTTSSRTLKHHWTKEEDATLVECLVELVSACGW---------------SHPAAKGLLNKLFPHYDDLCYIFGRDCATGGRAETFTDVGSNVPVGYDGFPA

Query:  YDGNDMEFSTMYSQGLDMSPDNIMGTRPGRLSEGRVGLSDSKRKRG
         DGN+ EF  +YSQ +D+S  ++  +RP R SEGR G S SKRKRG
Subjt:  YDGNDMEFSTMYSQGLDMSPDNIMGTRPGRLSEGRVGLSDSKRKRG

KAA0048280.1 retrotransposon protein [Cucumis melo var. makuwa]7.8e-3549.44Show/hide
Query:  MTTSSRTLKHHWTKEEDATLVECLVELVSACGW------------------------------------------------SHPAAKGLLNKLFPHYDDL
        MT+SSR  KH WTKEE+A LVECLVELV+A GW                                                SHPAAKGLLNK F HYD+L
Subjt:  MTTSSRTLKHHWTKEEDATLVECLVELVSACGW------------------------------------------------SHPAAKGLLNKLFPHYDDL

Query:  CYIFGRDCATGGRAETFTDVGSNVPVGYDGFPAYDGNDMEFSTMYSQGLDMSPDNIMGTRPGRLSEGRVGLSDSKRKRGG
         Y+FG+D ATGGRAE+F D+GSN P GYD F A D +D +F  MYS GL+MSPD++M TR  R+SE R   S SKRKR G
Subjt:  CYIFGRDCATGGRAETFTDVGSNVPVGYDGFPAYDGNDMEFSTMYSQGLDMSPDNIMGTRPGRLSEGRVGLSDSKRKRGG

KAA0064269.1 retrotransposon protein [Cucumis melo var. makuwa]3.0e-3453.46Show/hide
Query:  MTTSSRTLKHHWTKEEDATLVECLVELVSACGW---------------------------SHPAAKGLLNKLFPHYDDLCYIFGRDCATGGRAETFTDVG
        M+TS+R  +H WTKEE+ TLVECL+ELVS  GW                           SHPAAKGLLNK FP+YD+L Y+FGRD ATG   ETF DVG
Subjt:  MTTSSRTLKHHWTKEEDATLVECLVELVSACGW---------------------------SHPAAKGLLNKLFPHYDDLCYIFGRDCATGGRAETFTDVG

Query:  SNVP-VGYDGFPAYDGNDMEFSTMYSQGLDMSPDNIMGTRPGRLSEGRVGLSDSKRKRG
        SN P  GYD F   DGN+ +F  +YSQG+D+S DN+  +RP R  EGR+G S SKRKRG
Subjt:  SNVP-VGYDGFPAYDGNDMEFSTMYSQGLDMSPDNIMGTRPGRLSEGRVGLSDSKRKRG

TYJ99310.1 retrotransposon protein [Cucumis melo var. makuwa]4.6e-3561.36Show/hide
Query:  MTTSSRTLKHHWTKEEDATLVECLVELVSACGWSHPAAKGLLNKLFPHYDDLCYIFGRDCATGGRAETFTDVGSNVPV-GYDGFPAYDGNDMEFSTMYSQ
        M+TS+R L+H WTKEED TLVECL+ELVS  GW    AKGLLNK F +YD+L Y+FGRD AT    ETF DVGSN P  GYD F   DGN+ +F  +YSQ
Subjt:  MTTSSRTLKHHWTKEEDATLVECLVELVSACGWSHPAAKGLLNKLFPHYDDLCYIFGRDCATGGRAETFTDVGSNVPV-GYDGFPAYDGNDMEFSTMYSQ

Query:  GLDMSPDNIMGTRPGRLSEGRVGLSDSKRKRG
        G+D+S D++  +RP R SEGR G S SKRKRG
Subjt:  GLDMSPDNIMGTRPGRLSEGRVGLSDSKRKRG

TrEMBL top hitse value%identityAlignment
A0A5A7TB06 Retrotransposon protein6.4e-3556.85Show/hide
Query:  MTTSSRTLKHHWTKEEDATLVECLVELVSACGW---------------SHPAAKGLLNKLFPHYDDLCYIFGRDCATGGRAETFTDVGSNVPVGYDGFPA
        M+TS+R  +H WTKEE+ TLVECL+ELV   GW               SHPAAKGLLNKLFP+YD+  Y+FGRD ATG  A+TF DVGSN P GYD F  
Subjt:  MTTSSRTLKHHWTKEEDATLVECLVELVSACGW---------------SHPAAKGLLNKLFPHYDDLCYIFGRDCATGGRAETFTDVGSNVPVGYDGFPA

Query:  YDGNDMEFSTMYSQGLDMSPDNIMGTRPGRLSEGRVGLSDSKRKRG
         DGN+ EF  +YSQ +D+S  ++  +RP R SEGR G S SKRKRG
Subjt:  YDGNDMEFSTMYSQGLDMSPDNIMGTRPGRLSEGRVGLSDSKRKRG

A0A5A7TYQ6 Retrotransposon protein3.8e-3549.44Show/hide
Query:  MTTSSRTLKHHWTKEEDATLVECLVELVSACGW------------------------------------------------SHPAAKGLLNKLFPHYDDL
        MT+SSR  KH WTKEE+A LVECLVELV+A GW                                                SHPAAKGLLNK F HYD+L
Subjt:  MTTSSRTLKHHWTKEEDATLVECLVELVSACGW------------------------------------------------SHPAAKGLLNKLFPHYDDL

Query:  CYIFGRDCATGGRAETFTDVGSNVPVGYDGFPAYDGNDMEFSTMYSQGLDMSPDNIMGTRPGRLSEGRVGLSDSKRKRGG
         Y+FG+D ATGGRAE+F D+GSN P GYD F A D +D +F  MYS GL+MSPD++M TR  R+SE R   S SKRKR G
Subjt:  CYIFGRDCATGGRAETFTDVGSNVPVGYDGFPAYDGNDMEFSTMYSQGLDMSPDNIMGTRPGRLSEGRVGLSDSKRKRGG

A0A5A7VFF9 Retrotransposon protein1.4e-3453.46Show/hide
Query:  MTTSSRTLKHHWTKEEDATLVECLVELVSACGW---------------------------SHPAAKGLLNKLFPHYDDLCYIFGRDCATGGRAETFTDVG
        M+TS+R  +H WTKEE+ TLVECL+ELVS  GW                           SHPAAKGLLNK FP+YD+L Y+FGRD ATG   ETF DVG
Subjt:  MTTSSRTLKHHWTKEEDATLVECLVELVSACGW---------------------------SHPAAKGLLNKLFPHYDDLCYIFGRDCATGGRAETFTDVG

Query:  SNVP-VGYDGFPAYDGNDMEFSTMYSQGLDMSPDNIMGTRPGRLSEGRVGLSDSKRKRG
        SN P  GYD F   DGN+ +F  +YSQG+D+S DN+  +RP R  EGR+G S SKRKRG
Subjt:  SNVP-VGYDGFPAYDGNDMEFSTMYSQGLDMSPDNIMGTRPGRLSEGRVGLSDSKRKRG

A0A5D3BC43 Retrotransposon protein2.9e-3549.16Show/hide
Query:  MTTSSRTLKHHWTKEEDATLVECLVELVSACGW-----------------------------------------------SHPAAKGLLNKLFPHYDDLC
        MT+SSR  KH WTKEE+A LVECLVELV+  GW                                               SHPAAKGLLNKLF HYD+L 
Subjt:  MTTSSRTLKHHWTKEEDATLVECLVELVSACGW-----------------------------------------------SHPAAKGLLNKLFPHYDDLC

Query:  YIFGRDCATGGRAETFTDVGSNVPVGYDGFPAYDGNDMEFSTMYSQGLDMSPDNIMGTRPGRLSEGRVGLSDSKRKRGG
        Y+FG+D +TGGR E+F D+GSN P GYD F A    D +F +MYSQGL+MSPD++MGTR  R+SE R   S SKRKR G
Subjt:  YIFGRDCATGGRAETFTDVGSNVPVGYDGFPAYDGNDMEFSTMYSQGLDMSPDNIMGTRPGRLSEGRVGLSDSKRKRGG

A0A5D3BHP6 Retrotransposon protein2.2e-3561.36Show/hide
Query:  MTTSSRTLKHHWTKEEDATLVECLVELVSACGWSHPAAKGLLNKLFPHYDDLCYIFGRDCATGGRAETFTDVGSNVPV-GYDGFPAYDGNDMEFSTMYSQ
        M+TS+R L+H WTKEED TLVECL+ELVS  GW    AKGLLNK F +YD+L Y+FGRD AT    ETF DVGSN P  GYD F   DGN+ +F  +YSQ
Subjt:  MTTSSRTLKHHWTKEEDATLVECLVELVSACGWSHPAAKGLLNKLFPHYDDLCYIFGRDCATGGRAETFTDVGSNVPV-GYDGFPAYDGNDMEFSTMYSQ

Query:  GLDMSPDNIMGTRPGRLSEGRVGLSDSKRKRG
        G+D+S D++  +RP R SEGR G S SKRKRG
Subjt:  GLDMSPDNIMGTRPGRLSEGRVGLSDSKRKRG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACAACTTCTTCAAGGACCCTAAAGCACCACTGGACGAAAGAGGAAGATGCCACCCTCGTTGAATGTCTGGTGGAATTAGTATCAGCCTGCGGCTGGAGTCATCCAGC
CGCAAAAGGCCTCCTAAACAAACTATTTCCCCATTACGACGACCTATGCTACATCTTTGGAAGAGATTGTGCAACAGGAGGTCGTGCTGAAACCTTTACCGATGTTGGGT
CGAACGTGCCTGTAGGGTACGATGGATTTCCCGCTTATGACGGGAACGATATGGAGTTCTCCACGATGTACAGTCAGGGACTGGACATGTCACCTGACAACATAATGGGT
ACACGACCCGGTCGGTTGTCTGAGGGTAGGGTTGGTTTGAGTGATTCGAAGAGGAAACGAGGAGGGTAG
mRNA sequenceShow/hide mRNA sequence
ATGACAACTTCTTCAAGGACCCTAAAGCACCACTGGACGAAAGAGGAAGATGCCACCCTCGTTGAATGTCTGGTGGAATTAGTATCAGCCTGCGGCTGGAGTCATCCAGC
CGCAAAAGGCCTCCTAAACAAACTATTTCCCCATTACGACGACCTATGCTACATCTTTGGAAGAGATTGTGCAACAGGAGGTCGTGCTGAAACCTTTACCGATGTTGGGT
CGAACGTGCCTGTAGGGTACGATGGATTTCCCGCTTATGACGGGAACGATATGGAGTTCTCCACGATGTACAGTCAGGGACTGGACATGTCACCTGACAACATAATGGGT
ACACGACCCGGTCGGTTGTCTGAGGGTAGGGTTGGTTTGAGTGATTCGAAGAGGAAACGAGGAGGGTAG
Protein sequenceShow/hide protein sequence
MTTSSRTLKHHWTKEEDATLVECLVELVSACGWSHPAAKGLLNKLFPHYDDLCYIFGRDCATGGRAETFTDVGSNVPVGYDGFPAYDGNDMEFSTMYSQGLDMSPDNIMG
TRPGRLSEGRVGLSDSKRKRGG