CuGenDBv2

Gene ID	PI0017047
Organism	Cucumis metuliferus PI 482460 (Melon (PI 482460) v1)
Description	RRM domain-containing protein
Genome location	chr03:24571827..24574300
RNA-Seq Expression	PI0017047
Synteny	PI0017047
Gene Ontology terms	GO:0003723 - RNA binding (molecular function)
InterPro domains	IPR000504 - RNA recognition motif domain IPR012677 - Nucleotide-binding alpha-beta plait domain superfamily IPR035979 - RNA-binding domain superfamily

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAG6592987.1 hypothetical protein SDJN03_12463, partial [Cucurbita argyrosperma subsp. sororia]

9.8e-90

85.43

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Query:  MGSAKDEQFAMFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVSVHFIPNYTEPINSSQCALVEMKDSKEAKSVITVIAQFPFMMSGMPRPVRARPAE
        MGSA DEQ+A FEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVSVHFIPN+TEPINSSQCALVEMKDSKEA SVI+VIAQFPFMMSGMPRPVRA PAE
Subjt:  MGSAKDEQFAMFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVSVHFIPNYTEPINSSQCALVEMKDSKEAKSVITVIAQFPFMMSGMPRPVRARPAE

Query:  VEMFDDRPVKPGRKISFRWLERDDPDFEVARQIKRLTEKHVAEAAFLLKQHLAEEDKLAKQQQETLKGNYKKYEIVESVMADGTARKLAKHYNMRVSDD
        VEMFDDRP+KPGRKISF WL +DDPDFEVA+++K LT++HVAEAAFLLKQ L EE+KLAKQQQ+ LK NYKKYEIVE VM DGTAR+LA+ YNMRV+DD
Subjt:  VEMFDDRPVKPGRKISFRWLERDDPDFEVARQIKRLTEKHVAEAAFLLKQHLAEEDKLAKQQQETLKGNYKKYEIVESVMADGTARKLAKHYNMRVSDD

KAG7025396.1 hypothetical protein SDJN02_11891, partial [Cucurbita argyrosperma subsp. argyrosperma]

9.8e-90

85.43

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Query:  MGSAKDEQFAMFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVSVHFIPNYTEPINSSQCALVEMKDSKEAKSVITVIAQFPFMMSGMPRPVRARPAE
        MGSA DEQ+A FEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVSVHFIPN+TEPINSSQCALVEMKDSKEA SVI+VIAQFPFMMSGMPRPVRA PAE
Subjt:  MGSAKDEQFAMFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVSVHFIPNYTEPINSSQCALVEMKDSKEAKSVITVIAQFPFMMSGMPRPVRARPAE

Query:  VEMFDDRPVKPGRKISFRWLERDDPDFEVARQIKRLTEKHVAEAAFLLKQHLAEEDKLAKQQQETLKGNYKKYEIVESVMADGTARKLAKHYNMRVSDD
        VEMFDDRP+KPGRKISF WL +DDPDFEVA+++K LT++HVAEAAFLLKQ L EE+KLAKQQQ+ LK NYKKYEIVE VM DGTAR+LA+ YNMRV+DD
Subjt:  VEMFDDRPVKPGRKISFRWLERDDPDFEVARQIKRLTEKHVAEAAFLLKQHLAEEDKLAKQQQETLKGNYKKYEIVESVMADGTARKLAKHYNMRVSDD

XP_004138411.1 uncharacterized protein LOC101221287 [Cucumis sativus]

6.1e-100

94.47

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Query:  MGSAKDEQFAMFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVSVHFIPNYTEPINSSQCALVEMKDSKEAKSVITVIAQFPFMMSGMPRPVRARPAE
        MGS KDEQFAMFEEKVKRTVYVDNLS QVTEPVLRTALDQFGTVVSVHFIPNYTEPINSSQCALVEMKDSKEAKSVITVIAQFPFMMSGMPRPVRARPAE
Subjt:  MGSAKDEQFAMFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVSVHFIPNYTEPINSSQCALVEMKDSKEAKSVITVIAQFPFMMSGMPRPVRARPAE

Query:  VEMFDDRPVKPGRKISFRWLERDDPDFEVARQIKRLTEKHVAEAAFLLKQHLAEEDKLAKQQQETLKGNYKKYEIVESVMADGTARKLAKHYNMRVSDD
        VEMFDDRPVKPGRKISFRWLE DDPDFEVARQIKRL++KHVAEAAFL+KQH+AEE+KLAKQQQETLKGNYKKYEIV+SVMADGTAR+LAKHYNMR+SDD
Subjt:  VEMFDDRPVKPGRKISFRWLERDDPDFEVARQIKRLTEKHVAEAAFLLKQHLAEEDKLAKQQQETLKGNYKKYEIVESVMADGTARKLAKHYNMRVSDD

XP_008441485.1 PREDICTED: uncharacterized protein LOC103485592 [Cucumis melo]

6.1e-100

94.47

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Query:  MGSAKDEQFAMFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVSVHFIPNYTEPINSSQCALVEMKDSKEAKSVITVIAQFPFMMSGMPRPVRARPAE
        MGSAKDEQF+MFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVV+VHFIPNYTEPINSSQCALVEMKDSKEAKSVI VIAQFPFMMSGMPRPVRARPAE
Subjt:  MGSAKDEQFAMFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVSVHFIPNYTEPINSSQCALVEMKDSKEAKSVITVIAQFPFMMSGMPRPVRARPAE

Query:  VEMFDDRPVKPGRKISFRWLERDDPDFEVARQIKRLTEKHVAEAAFLLKQHLAEEDKLAKQQQETLKGNYKKYEIVESVMADGTARKLAKHYNMRVSDD
         EMFDDRPVKPGRKISFRWLE DDPDFEVARQIKRLT+KHVAEAAFLLKQHLAEE+KLAKQQQETL+GNYKKYEIV+SVMADGTAR+LAK+YNMRVSDD
Subjt:  VEMFDDRPVKPGRKISFRWLERDDPDFEVARQIKRLTEKHVAEAAFLLKQHLAEEDKLAKQQQETLKGNYKKYEIVESVMADGTARKLAKHYNMRVSDD

XP_038886330.1 uncharacterized protein LOC120076542 [Benincasa hispida]

5.3e-96

91.46

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Query:  MGSAKDEQFAMFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVSVHFIPNYTEPINSSQCALVEMKDSKEAKSVITVIAQFPFMMSGMPRPVRARPAE
        MGS KDEQFAMFEEKVKRTVYVDNLSP VTEPVLRTALDQFGTVVSVHFIPNYTEPIN+SQCALVEMKD KEAKSVI+VIAQFPFMMSGMPRPVRARPAE
Subjt:  MGSAKDEQFAMFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVSVHFIPNYTEPINSSQCALVEMKDSKEAKSVITVIAQFPFMMSGMPRPVRARPAE

Query:  VEMFDDRPVKPGRKISFRWLERDDPDFEVARQIKRLTEKHVAEAAFLLKQHLAEEDKLAKQQQETLKGNYKKYEIVESVMADGTARKLAKHYNMRVSDD
        VEMFDDRPVKPGRKISF WLE+DDPDFEVA+++K LT KHVAEAAFLLK HLAEE+KLAKQQQE LKGNYKKYEIVESVMADGTAR+LAK YNMRVSDD
Subjt:  VEMFDDRPVKPGRKISFRWLERDDPDFEVARQIKRLTEKHVAEAAFLLKQHLAEEDKLAKQQQETLKGNYKKYEIVESVMADGTARKLAKHYNMRVSDD

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KAE7 RRM domain-containing protein

3.0e-100

94.47

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Query:  MGSAKDEQFAMFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVSVHFIPNYTEPINSSQCALVEMKDSKEAKSVITVIAQFPFMMSGMPRPVRARPAE
        MGS KDEQFAMFEEKVKRTVYVDNLS QVTEPVLRTALDQFGTVVSVHFIPNYTEPINSSQCALVEMKDSKEAKSVITVIAQFPFMMSGMPRPVRARPAE
Subjt:  MGSAKDEQFAMFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVSVHFIPNYTEPINSSQCALVEMKDSKEAKSVITVIAQFPFMMSGMPRPVRARPAE

Query:  VEMFDDRPVKPGRKISFRWLERDDPDFEVARQIKRLTEKHVAEAAFLLKQHLAEEDKLAKQQQETLKGNYKKYEIVESVMADGTARKLAKHYNMRVSDD
        VEMFDDRPVKPGRKISFRWLE DDPDFEVARQIKRL++KHVAEAAFL+KQH+AEE+KLAKQQQETLKGNYKKYEIV+SVMADGTAR+LAKHYNMR+SDD
Subjt:  VEMFDDRPVKPGRKISFRWLERDDPDFEVARQIKRLTEKHVAEAAFLLKQHLAEEDKLAKQQQETLKGNYKKYEIVESVMADGTARKLAKHYNMRVSDD

A0A1S3B3J3 uncharacterized protein LOC103485592

3.0e-100

94.47

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Query:  MGSAKDEQFAMFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVSVHFIPNYTEPINSSQCALVEMKDSKEAKSVITVIAQFPFMMSGMPRPVRARPAE
        MGSAKDEQF+MFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVV+VHFIPNYTEPINSSQCALVEMKDSKEAKSVI VIAQFPFMMSGMPRPVRARPAE
Subjt:  MGSAKDEQFAMFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVSVHFIPNYTEPINSSQCALVEMKDSKEAKSVITVIAQFPFMMSGMPRPVRARPAE

Query:  VEMFDDRPVKPGRKISFRWLERDDPDFEVARQIKRLTEKHVAEAAFLLKQHLAEEDKLAKQQQETLKGNYKKYEIVESVMADGTARKLAKHYNMRVSDD
         EMFDDRPVKPGRKISFRWLE DDPDFEVARQIKRLT+KHVAEAAFLLKQHLAEE+KLAKQQQETL+GNYKKYEIV+SVMADGTAR+LAK+YNMRVSDD
Subjt:  VEMFDDRPVKPGRKISFRWLERDDPDFEVARQIKRLTEKHVAEAAFLLKQHLAEEDKLAKQQQETLKGNYKKYEIVESVMADGTARKLAKHYNMRVSDD

A0A6J1DB90 uncharacterized protein LOC111018537

2.7e-85

81.41

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Query:  MGSAKDEQFAMFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVSVHFIPNYTEPINSSQCALVEMKDSKEAKSVITVIAQFPFMMSGMPRPVRARPAE
        MGSA +EQFA FEEKVKRTVYVDNLSPQVTEPV+RTALDQFGTVV V FIPNY EP+NSSQCALVEMKD KEAKSVI+VIA+FPFM+SGMPRPVRARPAE
Subjt:  MGSAKDEQFAMFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVSVHFIPNYTEPINSSQCALVEMKDSKEAKSVITVIAQFPFMMSGMPRPVRARPAE

Query:  VEMFDDRPVKPGRKISFRWLERDDPDFEVARQIKRLTEKHVAEAAFLLKQHLAEEDKLAKQQQETLKGNYKKYEIVESVMADGTARKLAKHYNMRVSDD
        VEMFDDRP+KPG KISF WL+++DPDF+VA+++K  T KH AE AFLLKQ L EE+KLAKQQQE LKGNYKK+EIVESVM DGTAR+LAK Y+MRV DD
Subjt:  VEMFDDRPVKPGRKISFRWLERDDPDFEVARQIKRLTEKHVAEAAFLLKQHLAEEDKLAKQQQETLKGNYKKYEIVESVMADGTARKLAKHYNMRVSDD

A0A6J1H6P8 uncharacterized protein LOC111460615

3.1e-89

84.42

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Query:  MGSAKDEQFAMFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVSVHFIPNYTEPINSSQCALVEMKDSKEAKSVITVIAQFPFMMSGMPRPVRARPAE
        MGSA DEQ+  FEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVSVHFIPN+TEPINSSQCALVEMKDSKEA SVI++IAQFPFMMSGMPRPVRA PAE
Subjt:  MGSAKDEQFAMFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVSVHFIPNYTEPINSSQCALVEMKDSKEAKSVITVIAQFPFMMSGMPRPVRARPAE

Query:  VEMFDDRPVKPGRKISFRWLERDDPDFEVARQIKRLTEKHVAEAAFLLKQHLAEEDKLAKQQQETLKGNYKKYEIVESVMADGTARKLAKHYNMRVSDD
        VEMFDDRP+KPGRKISF WL +DDPDFEVA+++K LT++HVAEAAFLLKQ L EE+KLAKQQQ+ LK NYKKYEIVE VM DGTAR+LA+ YNMRV+DD
Subjt:  VEMFDDRPVKPGRKISFRWLERDDPDFEVARQIKRLTEKHVAEAAFLLKQHLAEEDKLAKQQQETLKGNYKKYEIVESVMADGTARKLAKHYNMRVSDD

A0A6J1KVQ1 uncharacterized protein LOC111498019

1.4e-89

84.42

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Query:  MGSAKDEQFAMFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVSVHFIPNYTEPINSSQCALVEMKDSKEAKSVITVIAQFPFMMSGMPRPVRARPAE
        MGSA DEQ+A FEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVSVHFIPN+TEPINSSQCALVEMKDSKEA SVI+VI+QFPFMMSGMPRPVRA PAE
Subjt:  MGSAKDEQFAMFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVSVHFIPNYTEPINSSQCALVEMKDSKEAKSVITVIAQFPFMMSGMPRPVRARPAE

Query:  VEMFDDRPVKPGRKISFRWLERDDPDFEVARQIKRLTEKHVAEAAFLLKQHLAEEDKLAKQQQETLKGNYKKYEIVESVMADGTARKLAKHYNMRVSDD
        VEMFDDRP+KPGRKISF WL ++DPDFEVA+++K LT++HVAEAAFLLKQ L EE+KLAKQQQ+ LKGNYKKYEI+E VM DGTAR+LA+ YNMRV+DD
Subjt:  VEMFDDRPVKPGRKISFRWLERDDPDFEVARQIKRLTEKHVAEAAFLLKQHLAEEDKLAKQQQETLKGNYKKYEIVESVMADGTARKLAKHYNMRVSDD

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT1G05970.1 RNA-binding (RRM/RBD/RNP motifs) family protein

3.4e-48

48.21

Show/hide

Query:  MGSAKDEQFAMFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVSVHFIPNYTEPINSSQCALVEMKDSKEAKSVITVIAQFPFMMSGMPRPVRARPAE
        M + ++  +  F E+V+RTVYVD L+P  T PV+ +A +QFGTV  V FIPNY  P       LVEM++ +  ++VI+ ++Q PFM++GMPRPVRA  AE
Subjt:  MGSAKDEQFAMFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVSVHFIPNYTEPINSSQCALVEMKDSKEAKSVITVIAQFPFMMSGMPRPVRARPAE

Query:  VEMFDDRPVKPGRKISFRWLERDDPDFEVARQIKRLTEKHVAEAAFLLKQHLAEEDKLAKQQQETLKGNYKKYEIVESVMADGTARKLAKHYNMR
          MF D+P KPGR + FRW++ +DPDF+ AR++KRL  KH AE +F+LK  L E +KL+KQQ ET   ++KK+E+++ ++ DG A+KLA  Y+++
Subjt:  VEMFDDRPVKPGRKISFRWLERDDPDFEVARQIKRLTEKHVAEAAFLLKQHLAEEDKLAKQQQETLKGNYKKYEIVESVMADGTARKLAKHYNMR

AT1G05970.2 RNA-binding (RRM/RBD/RNP motifs) family protein

1.1e-49

48.21

Show/hide

Query:  MGSAKDEQFAMFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVSVHFIPNYTEPINSSQCALVEMKDSKEAKSVITVIAQFPFMMSGMPRPVRARPAE
        M + ++  +  F E+V+RTVYVD L+P  T PV+ +A +QFGTV  V FIPNY  P       LVEM++ +  ++VI+ ++Q PFM++GMPRPVRA  AE
Subjt:  MGSAKDEQFAMFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVSVHFIPNYTEPINSSQCALVEMKDSKEAKSVITVIAQFPFMMSGMPRPVRARPAE

Query:  VEMFDDRPVKPGRKISFRWLERDDPDFEVARQIKRLTEKHVAEAAFLLKQHLAEEDKLAKQQQETLKGNYKKYEIVESVMADGTARKLAKHYNMR
          MF D+P KPGR + FRW++ +DPDF+ AR++KRL  KH AE +F+LK+ L E +KL+KQQ ET   ++KK+E+++ ++ DG A+KLA  Y+++
Subjt:  VEMFDDRPVKPGRKISFRWLERDDPDFEVARQIKRLTEKHVAEAAFLLKQHLAEEDKLAKQQQETLKGNYKKYEIVESVMADGTARKLAKHYNMR

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGGGATCAGCGAAGGATGAGCAATTTGCCATGTTTGAGGAGAAGGTAAAACGGACTGTGTATGTTGATAATCTCTCTCCTCAAGTAACTGAGCCTGTTTTGAGAACTGC
TTTAGATCAGTTTGGGACTGTGGTCAGTGTCCATTTTATTCCAAATTACACGGAGCCAATTAATAGCTCTCAATGTGCTCTAGTGGAGATGAAGGATTCGAAGGAGGCGA
AATCTGTAATCACCGTTATAGCTCAATTCCCTTTCATGATGTCTGGAATGCCGAGACCGGTGAGGGCTCGCCCTGCCGAAGTAGAAATGTTTGATGATCGCCCTGTCAAG
CCTGGTAGGAAGATTAGCTTTAGATGGCTGGAAAGGGATGATCCTGATTTTGAAGTGGCCAGACAAATCAAGCGTCTTACTGAGAAACATGTGGCTGAAGCTGCATTTTT
GCTCAAGCAACATTTGGCGGAAGAGGATAAGCTTGCAAAGCAGCAACAAGAAACACTAAAAGGAAACTACAAGAAATATGAGATTGTAGAAAGTGTAATGGCTGATGGAA
CTGCCCGCAAGTTAGCAAAACATTATAATATGCGAGTTTCAGATGATTAA

mRNA sequence

Show/hide mRNA sequence

ATTTTCCCCGATTCTGCACTCCCTTCACCGCCATTTTCAAAGTTTCCGACGCCGATCACCCCTTTCTCCCCCCGCCCACAAAGTTGTTCGATCTCCCTCCGTTAGTGGAG
ATGCGCATAAGCTAGGCCAGACACTCACGGATACCAAAATGATCTGAATGCTTGTTTGTTCTTCATGATCCCTTATTAGAGATGGGATCAGCGAAGGATGAGCAATTTGC
CATGTTTGAGGAGAAGGTAAAACGGACTGTGTATGTTGATAATCTCTCTCCTCAAGTAACTGAGCCTGTTTTGAGAACTGCTTTAGATCAGTTTGGGACTGTGGTCAGTG
TCCATTTTATTCCAAATTACACGGAGCCAATTAATAGCTCTCAATGTGCTCTAGTGGAGATGAAGGATTCGAAGGAGGCGAAATCTGTAATCACCGTTATAGCTCAATTC
CCTTTCATGATGTCTGGAATGCCGAGACCGGTGAGGGCTCGCCCTGCCGAAGTAGAAATGTTTGATGATCGCCCTGTCAAGCCTGGTAGGAAGATTAGCTTTAGATGGCT
GGAAAGGGATGATCCTGATTTTGAAGTGGCCAGACAAATCAAGCGTCTTACTGAGAAACATGTGGCTGAAGCTGCATTTTTGCTCAAGCAACATTTGGCGGAAGAGGATA
AGCTTGCAAAGCAGCAACAAGAAACACTAAAAGGAAACTACAAGAAATATGAGATTGTAGAAAGTGTAATGGCTGATGGAACTGCCCGCAAGTTAGCAAAACATTATAAT
ATGCGAGTTTCAGATGATTAATCGAAGCCTTTGAAGCCTTGCTTTTGTAACCTTTTAATGCCATTGATTTTTACATGTAAATTTGTACAAATTGTCGTTTATATGGCTGA
ATAGAGATGAATTAGAGACTTCTTTTGTGATTTAGAGGGAGAAAGATAGATATTTAGTATAATACACCTAATAACACTCTTGGCTTTTTTTTTTTTTTTAAAAAGAAAAA
CATTGTATTTTTCCACCTTTCAGAT

Protein sequence

Show/hide protein sequence

MGSAKDEQFAMFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVSVHFIPNYTEPINSSQCALVEMKDSKEAKSVITVIAQFPFMMSGMPRPVRARPAEVEMFDDRPVK
PGRKISFRWLERDDPDFEVARQIKRLTEKHVAEAAFLLKQHLAEEDKLAKQQQETLKGNYKKYEIVESVMADGTARKLAKHYNMRVSDD

PI0017047 (gene) of Melon (PI 482460) v1 genome