CuGenDBv2

Gene ID	PI0017086
Organism	Cucumis metuliferus PI 482460 (Melon (PI 482460) v1)
Description	Photosystem II CP43 reaction center protein
Genome location	tig00003741:10038..10436
RNA-Seq Expression	PI0017086
Synteny	PI0017086
Gene Ontology terms	GO:0009772 - photosynthetic electron transport in photosystem II (biological process) GO:0018298 - protein-chromophore linkage (biological process) GO:0009523 - photosystem II (cellular component) GO:0009535 - chloroplast thylakoid membrane (cellular component) GO:0016021 - integral component of membrane (cellular component) GO:0010242 - oxygen evolving activity (molecular function) GO:0016168 - chlorophyll binding (molecular function) GO:0045156 - electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity (molecular function) GO:0046872 - metal ion binding (molecular function)
InterPro domains	IPR000932 - Photosystem antenna protein-like IPR036001 - Photosystem antenna protein-like superfamily IPR044900 - Photosystem II CP43 reaction centre protein superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

QVX28138.1 photosystem II CP43 chlorophyll apoprotein [Passiflora mucronata]

1.2e-72

100

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Query:  MRSPTGEVIFGGETMRFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEYMTHAPLGSLNSVGGVATEINAVNYVSPRSWLATSHFVLGFFLFVGH
        MRSPTGEVIFGGETMRFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEYMTHAPLGSLNSVGGVATEINAVNYVSPRSWLATSHFVLGFFLFVGH
Subjt:  MRSPTGEVIFGGETMRFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEYMTHAPLGSLNSVGGVATEINAVNYVSPRSWLATSHFVLGFFLFVGH

Query:  LWHAGRARAAAAGFEKGIDRDFEPVLFMTPLN
        LWHAGRARAAAAGFEKGIDRDFEPVLFMTPLN
Subjt:  LWHAGRARAAAAGFEKGIDRDFEPVLFMTPLN

YP_009390301.1 photosystem II CP43 chlorophyll apoprotein [Abelmoschus esculentus]

1.2e-72

100

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Query:  MRSPTGEVIFGGETMRFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEYMTHAPLGSLNSVGGVATEINAVNYVSPRSWLATSHFVLGFFLFVGH
        MRSPTGEVIFGGETMRFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEYMTHAPLGSLNSVGGVATEINAVNYVSPRSWLATSHFVLGFFLFVGH
Subjt:  MRSPTGEVIFGGETMRFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEYMTHAPLGSLNSVGGVATEINAVNYVSPRSWLATSHFVLGFFLFVGH

Query:  LWHAGRARAAAAGFEKGIDRDFEPVLFMTPLN
        LWHAGRARAAAAGFEKGIDRDFEPVLFMTPLN
Subjt:  LWHAGRARAAAAGFEKGIDRDFEPVLFMTPLN

YP_009501732.1 photosystem II CP43 chlorophyll apoprotein [Passiflora serratifolia]

1.2e-72

100

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Query:  MRSPTGEVIFGGETMRFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEYMTHAPLGSLNSVGGVATEINAVNYVSPRSWLATSHFVLGFFLFVGH
        MRSPTGEVIFGGETMRFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEYMTHAPLGSLNSVGGVATEINAVNYVSPRSWLATSHFVLGFFLFVGH
Subjt:  MRSPTGEVIFGGETMRFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEYMTHAPLGSLNSVGGVATEINAVNYVSPRSWLATSHFVLGFFLFVGH

Query:  LWHAGRARAAAAGFEKGIDRDFEPVLFMTPLN
        LWHAGRARAAAAGFEKGIDRDFEPVLFMTPLN
Subjt:  LWHAGRARAAAAGFEKGIDRDFEPVLFMTPLN

YP_009751902.1 photosystem II 43 kDa protein [Cyclanthera pedata]

1.2e-72

100

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Query:  MRSPTGEVIFGGETMRFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEYMTHAPLGSLNSVGGVATEINAVNYVSPRSWLATSHFVLGFFLFVGH
        MRSPTGEVIFGGETMRFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEYMTHAPLGSLNSVGGVATEINAVNYVSPRSWLATSHFVLGFFLFVGH
Subjt:  MRSPTGEVIFGGETMRFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEYMTHAPLGSLNSVGGVATEINAVNYVSPRSWLATSHFVLGFFLFVGH

Query:  LWHAGRARAAAAGFEKGIDRDFEPVLFMTPLN
        LWHAGRARAAAAGFEKGIDRDFEPVLFMTPLN
Subjt:  LWHAGRARAAAAGFEKGIDRDFEPVLFMTPLN

YP_009776819.1 photosystem II CP43 chlorophyll apoprotein [Phyllanthus emblica]

1.2e-72

100

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Query:  MRSPTGEVIFGGETMRFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEYMTHAPLGSLNSVGGVATEINAVNYVSPRSWLATSHFVLGFFLFVGH
        MRSPTGEVIFGGETMRFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEYMTHAPLGSLNSVGGVATEINAVNYVSPRSWLATSHFVLGFFLFVGH
Subjt:  MRSPTGEVIFGGETMRFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEYMTHAPLGSLNSVGGVATEINAVNYVSPRSWLATSHFVLGFFLFVGH

Query:  LWHAGRARAAAAGFEKGIDRDFEPVLFMTPLN
        LWHAGRARAAAAGFEKGIDRDFEPVLFMTPLN
Subjt:  LWHAGRARAAAAGFEKGIDRDFEPVLFMTPLN

TrEMBL top hits

e value

%identity

Alignment

A0A218KG40 Photosystem II CP43 reaction center protein

5.9e-73

100

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Query:  MRSPTGEVIFGGETMRFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEYMTHAPLGSLNSVGGVATEINAVNYVSPRSWLATSHFVLGFFLFVGH
        MRSPTGEVIFGGETMRFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEYMTHAPLGSLNSVGGVATEINAVNYVSPRSWLATSHFVLGFFLFVGH
Subjt:  MRSPTGEVIFGGETMRFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEYMTHAPLGSLNSVGGVATEINAVNYVSPRSWLATSHFVLGFFLFVGH

Query:  LWHAGRARAAAAGFEKGIDRDFEPVLFMTPLN
        LWHAGRARAAAAGFEKGIDRDFEPVLFMTPLN
Subjt:  LWHAGRARAAAAGFEKGIDRDFEPVLFMTPLN

A0A482BG40 Photosystem II CP43 reaction center protein

5.9e-73

100

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Query:  MRSPTGEVIFGGETMRFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEYMTHAPLGSLNSVGGVATEINAVNYVSPRSWLATSHFVLGFFLFVGH
        MRSPTGEVIFGGETMRFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEYMTHAPLGSLNSVGGVATEINAVNYVSPRSWLATSHFVLGFFLFVGH
Subjt:  MRSPTGEVIFGGETMRFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEYMTHAPLGSLNSVGGVATEINAVNYVSPRSWLATSHFVLGFFLFVGH

Query:  LWHAGRARAAAAGFEKGIDRDFEPVLFMTPLN
        LWHAGRARAAAAGFEKGIDRDFEPVLFMTPLN
Subjt:  LWHAGRARAAAAGFEKGIDRDFEPVLFMTPLN

A0A6B9TV55 Photosystem II CP43 reaction center protein

5.9e-73

100

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Query:  MRSPTGEVIFGGETMRFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEYMTHAPLGSLNSVGGVATEINAVNYVSPRSWLATSHFVLGFFLFVGH
        MRSPTGEVIFGGETMRFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEYMTHAPLGSLNSVGGVATEINAVNYVSPRSWLATSHFVLGFFLFVGH
Subjt:  MRSPTGEVIFGGETMRFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEYMTHAPLGSLNSVGGVATEINAVNYVSPRSWLATSHFVLGFFLFVGH

Query:  LWHAGRARAAAAGFEKGIDRDFEPVLFMTPLN
        LWHAGRARAAAAGFEKGIDRDFEPVLFMTPLN
Subjt:  LWHAGRARAAAAGFEKGIDRDFEPVLFMTPLN

A0A6M3RWB3 Photosystem II CP43 reaction center protein

5.9e-73

100

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Query:  MRSPTGEVIFGGETMRFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEYMTHAPLGSLNSVGGVATEINAVNYVSPRSWLATSHFVLGFFLFVGH
        MRSPTGEVIFGGETMRFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEYMTHAPLGSLNSVGGVATEINAVNYVSPRSWLATSHFVLGFFLFVGH
Subjt:  MRSPTGEVIFGGETMRFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEYMTHAPLGSLNSVGGVATEINAVNYVSPRSWLATSHFVLGFFLFVGH

Query:  LWHAGRARAAAAGFEKGIDRDFEPVLFMTPLN
        LWHAGRARAAAAGFEKGIDRDFEPVLFMTPLN
Subjt:  LWHAGRARAAAAGFEKGIDRDFEPVLFMTPLN

A0A7G3STX1 Photosystem II CP43 reaction center protein

5.9e-73

100

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Query:  MRSPTGEVIFGGETMRFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEYMTHAPLGSLNSVGGVATEINAVNYVSPRSWLATSHFVLGFFLFVGH
        MRSPTGEVIFGGETMRFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEYMTHAPLGSLNSVGGVATEINAVNYVSPRSWLATSHFVLGFFLFVGH
Subjt:  MRSPTGEVIFGGETMRFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEYMTHAPLGSLNSVGGVATEINAVNYVSPRSWLATSHFVLGFFLFVGH

Query:  LWHAGRARAAAAGFEKGIDRDFEPVLFMTPLN
        LWHAGRARAAAAGFEKGIDRDFEPVLFMTPLN
Subjt:  LWHAGRARAAAAGFEKGIDRDFEPVLFMTPLN

SwissProt top hits

e value

%identity

Alignment

A1XFV1 Photosystem II CP43 reaction center protein

6.1e-75

98.48

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Query:  MRSPTGEVIFGGETMRFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEYMTHAPLGSLNSVGGVATEINAVNYVSPRSWLATSHFVLGFFLFVGH
        MRSPTGE+IFGGETMRFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEYMTHAPLGSLNSVGGVATEINAVNYVSPRSWLATSHFVLGFF FVGH
Subjt:  MRSPTGEVIFGGETMRFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEYMTHAPLGSLNSVGGVATEINAVNYVSPRSWLATSHFVLGFFLFVGH

Query:  LWHAGRARAAAAGFEKGIDRDFEPVLFMTPLN
        LWHAGRARAAAAGFEKGIDRDFEPVLFMTPLN
Subjt:  LWHAGRARAAAAGFEKGIDRDFEPVLFMTPLN

B1A931 Photosystem II CP43 reaction center protein

8.0e-75

99.24

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Query:  MRSPTGEVIFGGETMRFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEYMTHAPLGSLNSVGGVATEINAVNYVSPRSWLATSHFVLGFFLFVGH
        MRSPTGEVIFGGETMRFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEYMTHAPLGSLNSVGGVATEINAVNYVSPRSWLATSHFVLGFFLFVGH
Subjt:  MRSPTGEVIFGGETMRFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEYMTHAPLGSLNSVGGVATEINAVNYVSPRSWLATSHFVLGFFLFVGH

Query:  LWHAGRARAAAAGFEKGIDRDFEPVLFMTPLN
        LWHAGRARAAAAGFEKGIDRD EPVLFMTPLN
Subjt:  LWHAGRARAAAAGFEKGIDRDFEPVLFMTPLN

Q2QD93 Photosystem II CP43 reaction center protein

1.6e-75

100

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Query:  MRSPTGEVIFGGETMRFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEYMTHAPLGSLNSVGGVATEINAVNYVSPRSWLATSHFVLGFFLFVGH
        MRSPTGEVIFGGETMRFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEYMTHAPLGSLNSVGGVATEINAVNYVSPRSWLATSHFVLGFFLFVGH
Subjt:  MRSPTGEVIFGGETMRFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEYMTHAPLGSLNSVGGVATEINAVNYVSPRSWLATSHFVLGFFLFVGH

Query:  LWHAGRARAAAAGFEKGIDRDFEPVLFMTPLN
        LWHAGRARAAAAGFEKGIDRDFEPVLFMTPLN
Subjt:  LWHAGRARAAAAGFEKGIDRDFEPVLFMTPLN

Q2VEI0 Photosystem II CP43 reaction center protein

4.7e-75

99.24

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Query:  MRSPTGEVIFGGETMRFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEYMTHAPLGSLNSVGGVATEINAVNYVSPRSWLATSHFVLGFFLFVGH
        MRSPTGEVIFGGETMRFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEYMTHAPLGSLNSVGGVATEINAVNYVSPRSWLATSHFVLGFF FVGH
Subjt:  MRSPTGEVIFGGETMRFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEYMTHAPLGSLNSVGGVATEINAVNYVSPRSWLATSHFVLGFFLFVGH

Query:  LWHAGRARAAAAGFEKGIDRDFEPVLFMTPLN
        LWHAGRARAAAAGFEKGIDRDFEPVLFMTPLN
Subjt:  LWHAGRARAAAAGFEKGIDRDFEPVLFMTPLN

Q6EW52 Photosystem II CP43 reaction center protein

6.1e-75

98.48

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Query:  MRSPTGEVIFGGETMRFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEYMTHAPLGSLNSVGGVATEINAVNYVSPRSWLATSHFVLGFFLFVGH
        MRSPTGE+IFGGETMRFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEYMTHAPLGSLNSVGGVATEINAVNYVSPRSWLATSHFVLGFF FVGH
Subjt:  MRSPTGEVIFGGETMRFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEYMTHAPLGSLNSVGGVATEINAVNYVSPRSWLATSHFVLGFFLFVGH

Query:  LWHAGRARAAAAGFEKGIDRDFEPVLFMTPLN
        LWHAGRARAAAAGFEKGIDRDFEPVLFMTPLN
Subjt:  LWHAGRARAAAAGFEKGIDRDFEPVLFMTPLN

Arabidopsis top hits

e value

%identity

Alignment

ATCG00280.1 photosystem II reaction center protein C

2.2e-75

98.48

Show/hide

Query:  MRSPTGEVIFGGETMRFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEYMTHAPLGSLNSVGGVATEINAVNYVSPRSWLATSHFVLGFFLFVGH
        MRSPTGEVIFGGETMRFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEYMTHAPLGSLNSVGGVATEINAVNYVSPRSWL+TSHFVLGFFLFVGH
Subjt:  MRSPTGEVIFGGETMRFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEYMTHAPLGSLNSVGGVATEINAVNYVSPRSWLATSHFVLGFFLFVGH

Query:  LWHAGRARAAAAGFEKGIDRDFEPVLFMTPLN
        LWHAGRARAAAAGFEKGIDRDFEPVL MTPLN
Subjt:  LWHAGRARAAAAGFEKGIDRDFEPVLFMTPLN

Sequences

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CDS sequence

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ATGCGTTCTCCGACCGGAGAAGTCATTTTTGGGGGAGAGACTATGCGTTTTTGGGATCTGCGTGCTCCTTGGTTAGAACCACTAAGGGGTCCTAATGGTTTGGACTTGAG
TAGACTGAAAAAAGACATCCAACCTTGGCAAGAACGACGTTCCGCGGAATATATGACCCATGCTCCTTTAGGTTCTTTAAATTCCGTGGGGGGCGTAGCTACCGAAATTA
ATGCAGTCAATTATGTCTCTCCTAGAAGTTGGTTAGCTACCTCTCATTTTGTTCTAGGATTCTTCCTATTCGTAGGTCATTTATGGCATGCAGGAAGGGCTCGTGCAGCT
GCCGCAGGATTTGAAAAAGGAATTGATCGTGATTTTGAACCTGTTCTGTTCATGACTCCTCTTAACTGA

mRNA sequence

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Protein sequence

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MRSPTGEVIFGGETMRFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEYMTHAPLGSLNSVGGVATEINAVNYVSPRSWLATSHFVLGFFLFVGHLWHAGRARAA
AAGFEKGIDRDFEPVLFMTPLN

PI0017086 (gene) of Melon (PI 482460) v1 genome