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PI0017127 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0017127
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrotransposon gag protein
Genome locationchr01:16820846..16822564
RNA-Seq ExpressionPI0017127
SyntenyPI0017127
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0047407.1 retrotransposon gag protein [Cucumis melo var. makuwa]4.6e-1271.11Show/hide
Query:  MTTLLTSFVQGGNMKVAKCGVCGLIGHPNDKCPDLVEEANVIRKF
        MTTLLTSFVQG  +KV KCGVCGL+GHPNDKCP+++E+ N++RK+
Subjt:  MTTLLTSFVQGGNMKVAKCGVCGLIGHPNDKCPDLVEEANVIRKF

KAA0056048.1 retrotransposon gag protein [Cucumis melo var. makuwa]7.8e-1271.11Show/hide
Query:  MTTLLTSFVQGGNMKVAKCGVCGLIGHPNDKCPDLVEEANVIRKF
        MTTLLTSFVQG  +KV KCGVCGL+GHPNDKCP+++E+ NV+R++
Subjt:  MTTLLTSFVQGGNMKVAKCGVCGLIGHPNDKCPDLVEEANVIRKF

KAA0058150.1 uncharacterized protein E6C27_scaffold274G004630 [Cucumis melo var. makuwa]1.0e-1154.1Show/hide
Query:  MTTLLTSFVQGGNMKVAKCGVCGLIGHPNDKCPDLVEEANVIRKFVVAKERAQMEEVISSI
        MTTLLTSFVQG  +KV KCGVCGL+GHPNDKCP+++E+ N++R++        +E++I ++
Subjt:  MTTLLTSFVQGGNMKVAKCGVCGLIGHPNDKCPDLVEEANVIRKFVVAKERAQMEEVISSI

KAA0062012.1 retrotransposon gag protein [Cucumis melo var. makuwa]1.0e-1168.89Show/hide
Query:  MTTLLTSFVQGGNMKVAKCGVCGLIGHPNDKCPDLVEEANVIRKF
        MTTLLTSFVQG  +KV KCGVCGL+GHPNDKCP+++E+ N++R++
Subjt:  MTTLLTSFVQGGNMKVAKCGVCGLIGHPNDKCPDLVEEANVIRKF

TYK10613.1 retrotransposon gag protein [Cucumis melo var. makuwa]2.3e-1168.89Show/hide
Query:  MTTLLTSFVQGGNMKVAKCGVCGLIGHPNDKCPDLVEEANVIRKF
        MTTLLTSFVQG   KV KCGVCGL+GHPNDKCP+++E+ N++R++
Subjt:  MTTLLTSFVQGGNMKVAKCGVCGLIGHPNDKCPDLVEEANVIRKF

TrEMBL top hitse value%identityAlignment
A0A5A7ULU1 Retrotransposon gag protein3.8e-1271.11Show/hide
Query:  MTTLLTSFVQGGNMKVAKCGVCGLIGHPNDKCPDLVEEANVIRKF
        MTTLLTSFVQG  +KV KCGVCGL+GHPNDKCP+++E+ NV+R++
Subjt:  MTTLLTSFVQGGNMKVAKCGVCGLIGHPNDKCPDLVEEANVIRKF

A0A5A7USL5 Retrotrans_gag domain-containing protein4.9e-1254.1Show/hide
Query:  MTTLLTSFVQGGNMKVAKCGVCGLIGHPNDKCPDLVEEANVIRKFVVAKERAQMEEVISSI
        MTTLLTSFVQG  +KV KCGVCGL+GHPNDKCP+++E+ N++R++        +E++I ++
Subjt:  MTTLLTSFVQGGNMKVAKCGVCGLIGHPNDKCPDLVEEANVIRKFVVAKERAQMEEVISSI

A0A5A7V1C6 Retrotransposon gag protein4.9e-1268.89Show/hide
Query:  MTTLLTSFVQGGNMKVAKCGVCGLIGHPNDKCPDLVEEANVIRKF
        MTTLLTSFVQG  +KV KCGVCGL+GHPNDKCP+++E+ N++R++
Subjt:  MTTLLTSFVQGGNMKVAKCGVCGLIGHPNDKCPDLVEEANVIRKF

A0A5D3CFE7 Retrotransposon gag protein1.1e-1168.89Show/hide
Query:  MTTLLTSFVQGGNMKVAKCGVCGLIGHPNDKCPDLVEEANVIRKF
        MTTLLTSFVQG   KV KCGVCGL+GHPNDKCP+++E+ N++R++
Subjt:  MTTLLTSFVQGGNMKVAKCGVCGLIGHPNDKCPDLVEEANVIRKF

A0A5D3CRR8 Retrotransposon gag protein2.2e-1271.11Show/hide
Query:  MTTLLTSFVQGGNMKVAKCGVCGLIGHPNDKCPDLVEEANVIRKF
        MTTLLTSFVQG  +KV KCGVCGL+GHPNDKCP+++E+ N++RK+
Subjt:  MTTLLTSFVQGGNMKVAKCGVCGLIGHPNDKCPDLVEEANVIRKF

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACTACATTGCTCACTTCTTTTGTACAAGGTGGAAATATGAAAGTTGCAAAATGTGGAGTTTGCGGTCTCATTGGACATCCTAATGACAAGTGTCCCGACCTTGTGGA
AGAGGCAAATGTCATTAGGAAGTTTGTTGTTGCTAAGGAGCGTGCACAGATGGAAGAGGTGATTTCTTCGATTTTTCAGGATAGTAGTCTACCTCCTAAGTTAAGGGTAG
TTGGTGAAGACTTGACAGTTCTTGATGAATTCGGTTGA
mRNA sequenceShow/hide mRNA sequence
ATGACTACATTGCTCACTTCTTTTGTACAAGGTGGAAATATGAAAGTTGCAAAATGTGGAGTTTGCGGTCTCATTGGACATCCTAATGACAAGTGTCCCGACCTTGTGGA
AGAGGCAAATGTCATTAGGAAGTTTGTTGTTGCTAAGGAGCGTGCACAGATGGAAGAGGTGATTTCTTCGATTTTTCAGGATAGTAGTCTACCTCCTAAGTTAAGGGTAG
TTGGTGAAGACTTGACAGTTCTTGATGAATTCGGTTGA
Protein sequenceShow/hide protein sequence
MTTLLTSFVQGGNMKVAKCGVCGLIGHPNDKCPDLVEEANVIRKFVVAKERAQMEEVISSIFQDSSLPPKLRVVGEDLTVLDEFG