CuGenDBv2

Gene ID	PI0017131
Organism	Cucumis metuliferus PI 482460 (Melon (PI 482460) v1)
Description	Ribonuclease H
Genome location	chr11:23671715..23672209
RNA-Seq Expression	PI0017131
Synteny	PI0017131
Gene Ontology terms	GO:0006310 - DNA recombination (biological process) GO:0006508 - proteolysis (biological process) GO:0015074 - DNA integration (biological process) GO:0071897 - DNA biosynthetic process (biological process) GO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic (biological process) GO:0003723 - RNA binding (molecular function) GO:0003887 - DNA-directed DNA polymerase activity (molecular function) GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function) GO:0008233 - peptidase activity (molecular function)
InterPro domains	NA

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0046253.1 uncharacterized protein E6C27_scaffold284G00560 [Cucumis melo var. makuwa]

4.0e-49

70.78

Show/hide

Query:  MDKGGAKRIEKESLEACLPEKRTTEGFDSKAYKLMAKASYDFTTRTEFKS-KIFDERHGLSPTQRKLQKQGYFIPNSRPGVGYKSSEPVRITGKGKAKVA
        ++KG AK+IEK+ LEA LPE+RT EGFD KAYKLMAKA YDFTTRTE KS KIFD+R  LSPTQ+KLQKQGY IPNSR  +GY+SSEPVRITGKGKAKVA
Subjt:  MDKGGAKRIEKESLEACLPEKRTTEGFDSKAYKLMAKASYDFTTRTEFKS-KIFDERHGLSPTQRKLQKQGYFIPNSRPGVGYKSSEPVRITGKGKAKVA

Query:  DTCHITVEECNDSKEDKKNENKKSSVFYRITSSTARSSVFQRLNVPTREDKNQL
        +TCHITVEE  DSKE KK+ +++SSVF RI  ST R SVFQR++    +DK  L
Subjt:  DTCHITVEECNDSKEDKKNENKKSSVFYRITSSTARSSVFQRLNVPTREDKNQL

KAA0047477.1 uncharacterized protein E6C27_scaffold498G00940 [Cucumis melo var. makuwa]

4.0e-49

70.13

Show/hide

Query:  MDKGGAKRIEKESLEACLPEKRTTEGFDSKAYKLMAKASYDFTTRTEFKS-KIFDERHGLSPTQRKLQKQGYFIPNSRPGVGYKSSEPVRITGKGKAKVA
        ++KG AK+IEK+ L+A LPE+RT EGFD KAYKLMAKA YDFTTRTE KS KIFDER  LSPTQ+KLQKQGY IPNSR G+GY+SSEPVRITGKGKAKVA
Subjt:  MDKGGAKRIEKESLEACLPEKRTTEGFDSKAYKLMAKASYDFTTRTEFKS-KIFDERHGLSPTQRKLQKQGYFIPNSRPGVGYKSSEPVRITGKGKAKVA

Query:  DTCHITVEECNDSKEDKKNENKKSSVFYRITSSTARSSVFQRLNVPTREDKNQL
        +TCHITVEE  DS+E KK  +++SSVF RI  S  R SVFQR++    +D NQ+
Subjt:  DTCHITVEECNDSKEDKKNENKKSSVFYRITSSTARSSVFQRLNVPTREDKNQL

KAA0060609.1 uncharacterized protein E6C27_scaffold22G004870 [Cucumis melo var. makuwa]

8.1e-50

70.13

Show/hide

Query:  MDKGGAKRIEKESLEACLPEKRTTEGFDSKAYKLMAKASYDFTTRTEFKS-KIFDERHGLSPTQRKLQKQGYFIPNSRPGVGYKSSEPVRITGKGKAKVA
        ++KG AK+IEK+ LEA LPE+RT EGFD KAYKLMAKA YDFTTRTE KS KIFDER  LSPTQ+KLQKQGY IPNSR G+GY+SSEP+RITGKGKAKV 
Subjt:  MDKGGAKRIEKESLEACLPEKRTTEGFDSKAYKLMAKASYDFTTRTEFKS-KIFDERHGLSPTQRKLQKQGYFIPNSRPGVGYKSSEPVRITGKGKAKVA

Query:  DTCHITVEECNDSKEDKKNENKKSSVFYRITSSTARSSVFQRLNVPTREDKNQL
        +TCHITVEE  DSKE KK+ +++SSVF RI  S  R SVFQR++    +D NQ+
Subjt:  DTCHITVEECNDSKEDKKNENKKSSVFYRITSSTARSSVFQRLNVPTREDKNQL

TYJ98225.1 uncharacterized protein E5676_scaffold180G001270 [Cucumis melo var. makuwa]

4.0e-49

70.13

Show/hide

Query:  MDKGGAKRIEKESLEACLPEKRTTEGFDSKAYKLMAKASYDFTTRTEFKS-KIFDERHGLSPTQRKLQKQGYFIPNSRPGVGYKSSEPVRITGKGKAKVA
        ++KG AK+IEK+ L+A LPE+RT EGFD KAYKLMAKA YDFTTRTE KS KIFDER  LSPTQ+KLQKQGY IPNSR G+GY+SSEPVRITGKGKAKVA
Subjt:  MDKGGAKRIEKESLEACLPEKRTTEGFDSKAYKLMAKASYDFTTRTEFKS-KIFDERHGLSPTQRKLQKQGYFIPNSRPGVGYKSSEPVRITGKGKAKVA

Query:  DTCHITVEECNDSKEDKKNENKKSSVFYRITSSTARSSVFQRLNVPTREDKNQL
        +TCHITVEE  DS+E KK  +++SSVF RI  S  R SVFQR++    +D NQ+
Subjt:  DTCHITVEECNDSKEDKKNENKKSSVFYRITSSTARSSVFQRLNVPTREDKNQL

TYK02262.1 uncharacterized protein E5676_scaffold18G00630 [Cucumis melo var. makuwa]

8.1e-50

70.13

Show/hide

Query:  MDKGGAKRIEKESLEACLPEKRTTEGFDSKAYKLMAKASYDFTTRTEFKS-KIFDERHGLSPTQRKLQKQGYFIPNSRPGVGYKSSEPVRITGKGKAKVA
        ++KG AK+IEK+ LEA LPE+RT EGFD KAYKLMAKA YDFTTRTE KS KIFDER  LSPTQ+KLQKQGY IPNSR G+GY+SSEP+RITGKGKAKV 
Subjt:  MDKGGAKRIEKESLEACLPEKRTTEGFDSKAYKLMAKASYDFTTRTEFKS-KIFDERHGLSPTQRKLQKQGYFIPNSRPGVGYKSSEPVRITGKGKAKVA

Query:  DTCHITVEECNDSKEDKKNENKKSSVFYRITSSTARSSVFQRLNVPTREDKNQL
        +TCHITVEE  DSKE KK+ +++SSVF RI  S  R SVFQR++    +D NQ+
Subjt:  DTCHITVEECNDSKEDKKNENKKSSVFYRITSSTARSSVFQRLNVPTREDKNQL

TrEMBL top hits

e value

%identity

Alignment

A0A5A7TRQ6 RNase H domain-containing protein

2.0e-49

70.78

Show/hide

Query:  MDKGGAKRIEKESLEACLPEKRTTEGFDSKAYKLMAKASYDFTTRTEFKS-KIFDERHGLSPTQRKLQKQGYFIPNSRPGVGYKSSEPVRITGKGKAKVA
        ++KG AK+IEK+ LEA LPE+RT EGFD KAYKLMAKA YDFTTRTE KS KIFD+R  LSPTQ+KLQKQGY IPNSR  +GY+SSEPVRITGKGKAKVA
Subjt:  MDKGGAKRIEKESLEACLPEKRTTEGFDSKAYKLMAKASYDFTTRTEFKS-KIFDERHGLSPTQRKLQKQGYFIPNSRPGVGYKSSEPVRITGKGKAKVA

Query:  DTCHITVEECNDSKEDKKNENKKSSVFYRITSSTARSSVFQRLNVPTREDKNQL
        +TCHITVEE  DSKE KK+ +++SSVF RI  ST R SVFQR++    +DK  L
Subjt:  DTCHITVEECNDSKEDKKNENKKSSVFYRITSSTARSSVFQRLNVPTREDKNQL

A0A5A7TZU9 Ribonuclease H

2.0e-49

70.13

Show/hide

Query:  MDKGGAKRIEKESLEACLPEKRTTEGFDSKAYKLMAKASYDFTTRTEFKS-KIFDERHGLSPTQRKLQKQGYFIPNSRPGVGYKSSEPVRITGKGKAKVA
        ++KG AK+IEK+ L+A LPE+RT EGFD KAYKLMAKA YDFTTRTE KS KIFDER  LSPTQ+KLQKQGY IPNSR G+GY+SSEPVRITGKGKAKVA
Subjt:  MDKGGAKRIEKESLEACLPEKRTTEGFDSKAYKLMAKASYDFTTRTEFKS-KIFDERHGLSPTQRKLQKQGYFIPNSRPGVGYKSSEPVRITGKGKAKVA

Query:  DTCHITVEECNDSKEDKKNENKKSSVFYRITSSTARSSVFQRLNVPTREDKNQL
        +TCHITVEE  DS+E KK  +++SSVF RI  S  R SVFQR++    +D NQ+
Subjt:  DTCHITVEECNDSKEDKKNENKKSSVFYRITSSTARSSVFQRLNVPTREDKNQL

A0A5A7V4F2 Reverse transcriptase domain-containing protein

3.9e-50

70.13

Show/hide

Query:  MDKGGAKRIEKESLEACLPEKRTTEGFDSKAYKLMAKASYDFTTRTEFKS-KIFDERHGLSPTQRKLQKQGYFIPNSRPGVGYKSSEPVRITGKGKAKVA
        ++KG AK+IEK+ LEA LPE+RT EGFD KAYKLMAKA YDFTTRTE KS KIFDER  LSPTQ+KLQKQGY IPNSR G+GY+SSEP+RITGKGKAKV 
Subjt:  MDKGGAKRIEKESLEACLPEKRTTEGFDSKAYKLMAKASYDFTTRTEFKS-KIFDERHGLSPTQRKLQKQGYFIPNSRPGVGYKSSEPVRITGKGKAKVA

Query:  DTCHITVEECNDSKEDKKNENKKSSVFYRITSSTARSSVFQRLNVPTREDKNQL
        +TCHITVEE  DSKE KK+ +++SSVF RI  S  R SVFQR++    +D NQ+
Subjt:  DTCHITVEECNDSKEDKKNENKKSSVFYRITSSTARSSVFQRLNVPTREDKNQL

A0A5D3BTY1 Ribonuclease H

3.9e-50

70.13

Show/hide

Query:  MDKGGAKRIEKESLEACLPEKRTTEGFDSKAYKLMAKASYDFTTRTEFKS-KIFDERHGLSPTQRKLQKQGYFIPNSRPGVGYKSSEPVRITGKGKAKVA
        ++KG AK+IEK+ LEA LPE+RT EGFD KAYKLMAKA YDFTTRTE KS KIFDER  LSPTQ+KLQKQGY IPNSR G+GY+SSEP+RITGKGKAKV 
Subjt:  MDKGGAKRIEKESLEACLPEKRTTEGFDSKAYKLMAKASYDFTTRTEFKS-KIFDERHGLSPTQRKLQKQGYFIPNSRPGVGYKSSEPVRITGKGKAKVA

Query:  DTCHITVEECNDSKEDKKNENKKSSVFYRITSSTARSSVFQRLNVPTREDKNQL
        +TCHITVEE  DSKE KK+ +++SSVF RI  S  R SVFQR++    +D NQ+
Subjt:  DTCHITVEECNDSKEDKKNENKKSSVFYRITSSTARSSVFQRLNVPTREDKNQL

A0A5D3D5V8 RNase H domain-containing protein

2.0e-49

70.78

Show/hide

Query:  MDKGGAKRIEKESLEACLPEKRTTEGFDSKAYKLMAKASYDFTTRTEFKS-KIFDERHGLSPTQRKLQKQGYFIPNSRPGVGYKSSEPVRITGKGKAKVA
        ++KG AK+IEK+ LEA LPE+RT EGFD KAYKLMAKA YDFTTRTE KS KIFD+R  LSPTQ+KLQKQGY IPNSR  +GY+SSEPVRITGKGKAKVA
Subjt:  MDKGGAKRIEKESLEACLPEKRTTEGFDSKAYKLMAKASYDFTTRTEFKS-KIFDERHGLSPTQRKLQKQGYFIPNSRPGVGYKSSEPVRITGKGKAKVA

Query:  DTCHITVEECNDSKEDKKNENKKSSVFYRITSSTARSSVFQRLNVPTREDKNQL
        +TCHITVEE  DSKE KK+ +++SSVF RI  ST R SVFQR++    +DK  L
Subjt:  DTCHITVEECNDSKEDKKNENKKSSVFYRITSSTARSSVFQRLNVPTREDKNQL

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

Show/hide CDS sequence

ATGGATAAAGGAGGGGCGAAAAGGATTGAGAAAGAGAGCCTAGAAGCATGCCTTCCAGAAAAACGAACGACGGAAGGATTCGATTCAAAAGCATATAAATTGATGGCAAA
GGCAAGTTATGACTTTACAACCCGTACCGAGTTCAAAAGCAAGATATTTGATGAAAGGCATGGGCTTTCTCCTACGCAAAGGAAGCTTCAAAAGCAAGGATATTTTATAC
CAAATTCAAGACCAGGAGTTGGGTATAAGTCTTCCGAGCCTGTTCGAATAACTGGTAAAGGAAAAGCAAAAGTTGCTGACACATGCCACATTACTGTGGAAGAATGTAAC
GATTCTAAAGAAGACAAGAAAAACGAAAATAAAAAAAGTTCTGTTTTTTATCGCATCACCTCCTCTACTGCACGCTCTTCAGTTTTCCAGAGATTGAATGTACCGACAAG
GGAGGACAAAAATCAGCTTCTGAGTCCATCCGACTTTCTGCCTTTCAGAGACTAA

mRNA sequence

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Protein sequence

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MDKGGAKRIEKESLEACLPEKRTTEGFDSKAYKLMAKASYDFTTRTEFKSKIFDERHGLSPTQRKLQKQGYFIPNSRPGVGYKSSEPVRITGKGKAKVADTCHITVEECN
DSKEDKKNENKKSSVFYRITSSTARSSVFQRLNVPTREDKNQLLSPSDFLPFRD

PI0017131 (gene) of Melon (PI 482460) v1 genome