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PI0017140 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0017140
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Genome locationchr04:19342569..19344740
RNA-Seq ExpressionPI0017140
SyntenyPI0017140
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0016021 - integral component of membrane (cellular component)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR036875 - Zinc finger, CCHC-type superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0047785.1 putative retrotransposon protein [Cucumis melo var. makuwa]4.0e-2259.63Show/hide
Query:  MHGMEKSSTELHGMLKTAKLNIKSSPEVLMVQKGKNPKKREQDQGKGRDKVVAKATKVDAHAAARPKHKEPKPPKEGECYHCKKIGHWKRICLLYLEKLK
        MH  EKS  +LHGMLKTA+LNIKSS E LM++KGKNPKKREQ QG                        +PK PKEGE YHCK+IGHWKR C LYLE+LK
Subjt:  MHGMEKSSTELHGMLKTAKLNIKSSPEVLMVQKGKNPKKREQDQGKGRDKVVAKATKVDAHAAARPKHKEPKPPKEGECYHCKKIGHWKRICLLYLEKLK

Query:  KNKGNVLST
        KNKG+V ST
Subjt:  KNKGNVLST

KAA0056624.1 hypothetical protein E6C27_scaffold288G001440 [Cucumis melo var. makuwa]2.8e-3675.68Show/hide
Query:  MHGMEKSSTELHGMLKTAKLNIKSSPEVLMVQKGKNPKKREQDQGKGRDKVVAKATKVDAHAA--ARPKHKEPKPPKEGECYHCKKIGHWKRICLLYLEK
        MH +EKS T+LHGMLKTAKLNIK S EVLMVQKGKNPKKRE+DQGKG++KVV KA+KVDA A   +RPK KEPKPPKEGECY CKKI HW R C +YLE+
Subjt:  MHGMEKSSTELHGMLKTAKLNIKSSPEVLMVQKGKNPKKREQDQGKGRDKVVAKATKVDAHAA--ARPKHKEPKPPKEGECYHCKKIGHWKRICLLYLEK

Query:  LKKNKGNVLST
        LKKNKG++ ST
Subjt:  LKKNKGNVLST

KAA0066495.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]1.3e-3374.07Show/hide
Query:  MHGMEKSSTELHGMLKTAKLNIKSSPEVLMVQKGKNPKKREQDQGKGRDKVVAKATKVDAHAAARP--KHKEPKPPKEGECYHCKKIGHWKRICLLYLEK
        MHGM+KS TELHGMLKT KLNIKSS +VLM+QKGKNPKK+E DQGKG+ KV  K +KVDA  A RP  K KEPKPPKEGE YHCKKIG+WKR C LYL+ 
Subjt:  MHGMEKSSTELHGMLKTAKLNIKSSPEVLMVQKGKNPKKREQDQGKGRDKVVAKATKVDAHAAARP--KHKEPKPPKEGECYHCKKIGHWKRICLLYLEK

Query:  LKKNKGNV
        LKKNK +V
Subjt:  LKKNKGNV

TYK07553.1 putative retrotransposon protein [Cucumis melo var. makuwa]1.4e-3078.95Show/hide
Query:  TAKLNIKSSPEVLMVQKGKNPKKREQDQGKGRDKVVAKATKVDAHAA--ARPKHKEPKPPKEGECYHCKKIGHWKRICLLYLEKLKKNKGNVLST
        TAKLNIKSS EVLMVQKGKNPKKRE+DQGKG++KVV KA+KVDA A    RPK KEPKPPKEGECY CKKI HWKR C LYLE+LKKNKG++ ST
Subjt:  TAKLNIKSSPEVLMVQKGKNPKKREQDQGKGRDKVVAKATKVDAHAA--ARPKHKEPKPPKEGECYHCKKIGHWKRICLLYLEKLKKNKGNVLST

XP_016901775.1 PREDICTED: uncharacterized protein LOC107991397 [Cucumis melo]2.8e-2865.74Show/hide
Query:  MHGMEKSSTELHGMLKTAKLNIKSSPEVLMVQKGKNPKKREQDQGKGRDKVVAKATKVDAHAAARP--KHKEPKPPKEGECYHCKKIGHWKRICLLYLEK
        M+ M+KS ++LHGM K AKLNIKS+ E+LM+QKGKNPK R QDQGKG +KVV K +KVD   A +P  K K+PKP KE ECYHCKKIGHW+R   LYLE+
Subjt:  MHGMEKSSTELHGMLKTAKLNIKSSPEVLMVQKGKNPKKREQDQGKGRDKVVAKATKVDAHAAARP--KHKEPKPPKEGECYHCKKIGHWKRICLLYLEK

Query:  LKKNKGNV
        LK NKG+V
Subjt:  LKKNKGNV

TrEMBL top hitse value%identityAlignment
A0A1S4E1A7 uncharacterized protein LOC1079913971.4e-2865.74Show/hide
Query:  MHGMEKSSTELHGMLKTAKLNIKSSPEVLMVQKGKNPKKREQDQGKGRDKVVAKATKVDAHAAARP--KHKEPKPPKEGECYHCKKIGHWKRICLLYLEK
        M+ M+KS ++LHGM K AKLNIKS+ E+LM+QKGKNPK R QDQGKG +KVV K +KVD   A +P  K K+PKP KE ECYHCKKIGHW+R   LYLE+
Subjt:  MHGMEKSSTELHGMLKTAKLNIKSSPEVLMVQKGKNPKKREQDQGKGRDKVVAKATKVDAHAAARP--KHKEPKPPKEGECYHCKKIGHWKRICLLYLEK

Query:  LKKNKGNV
        LK NKG+V
Subjt:  LKKNKGNV

A0A5A7UN47 Uncharacterized protein1.4e-3675.68Show/hide
Query:  MHGMEKSSTELHGMLKTAKLNIKSSPEVLMVQKGKNPKKREQDQGKGRDKVVAKATKVDAHAA--ARPKHKEPKPPKEGECYHCKKIGHWKRICLLYLEK
        MH +EKS T+LHGMLKTAKLNIK S EVLMVQKGKNPKKRE+DQGKG++KVV KA+KVDA A   +RPK KEPKPPKEGECY CKKI HW R C +YLE+
Subjt:  MHGMEKSSTELHGMLKTAKLNIKSSPEVLMVQKGKNPKKREQDQGKGRDKVVAKATKVDAHAA--ARPKHKEPKPPKEGECYHCKKIGHWKRICLLYLEK

Query:  LKKNKGNVLST
        LKKNKG++ ST
Subjt:  LKKNKGNVLST

A0A5A7VL77 Retrovirus-related Pol polyprotein from transposon TNT 1-946.4e-3474.07Show/hide
Query:  MHGMEKSSTELHGMLKTAKLNIKSSPEVLMVQKGKNPKKREQDQGKGRDKVVAKATKVDAHAAARP--KHKEPKPPKEGECYHCKKIGHWKRICLLYLEK
        MHGM+KS TELHGMLKT KLNIKSS +VLM+QKGKNPKK+E DQGKG+ KV  K +KVDA  A RP  K KEPKPPKEGE YHCKKIG+WKR C LYL+ 
Subjt:  MHGMEKSSTELHGMLKTAKLNIKSSPEVLMVQKGKNPKKREQDQGKGRDKVVAKATKVDAHAAARP--KHKEPKPPKEGECYHCKKIGHWKRICLLYLEK

Query:  LKKNKGNV
        LKKNK +V
Subjt:  LKKNKGNV

A0A5D3C6L2 Putative retrotransposon protein6.6e-3178.95Show/hide
Query:  TAKLNIKSSPEVLMVQKGKNPKKREQDQGKGRDKVVAKATKVDAHAA--ARPKHKEPKPPKEGECYHCKKIGHWKRICLLYLEKLKKNKGNVLST
        TAKLNIKSS EVLMVQKGKNPKKRE+DQGKG++KVV KA+KVDA A    RPK KEPKPPKEGECY CKKI HWKR C LYLE+LKKNKG++ ST
Subjt:  TAKLNIKSSPEVLMVQKGKNPKKREQDQGKGRDKVVAKATKVDAHAA--ARPKHKEPKPPKEGECYHCKKIGHWKRICLLYLEKLKKNKGNVLST

A0A5D3CZL7 Putative polyprotein1.4e-2865.74Show/hide
Query:  MHGMEKSSTELHGMLKTAKLNIKSSPEVLMVQKGKNPKKREQDQGKGRDKVVAKATKVDAHAAARP--KHKEPKPPKEGECYHCKKIGHWKRICLLYLEK
        M+ M+KS ++LHGM K AKLNIKS+ E+LM+QKGKNPK R QDQGKG +KVV K +KVD   A +P  K K+PKP KE ECYHCKKIGHW+R   LYLE+
Subjt:  MHGMEKSSTELHGMLKTAKLNIKSSPEVLMVQKGKNPKKREQDQGKGRDKVVAKATKVDAHAAARP--KHKEPKPPKEGECYHCKKIGHWKRICLLYLEK

Query:  LKKNKGNV
        LK NKG+V
Subjt:  LKKNKGNV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCATGGGATGGAGAAGAGTTCGACTGAGCTGCATGGGATGCTAAAAACTGCTAAGTTGAACATCAAATCCAGTCCTGAGGTTTTGATGGTGCAAAAAGGGAAGAATCC
TAAGAAAAGGGAACAAGATCAAGGAAAAGGTAGGGACAAAGTTGTTGCCAAGGCAACAAAAGTTGATGCTCATGCTGCAGCTAGGCCCAAACATAAAGAGCCTAAACCAC
CCAAGGAAGGAGAATGTTATCACTGCAAGAAAATTGGGCATTGGAAGAGGATCTGTCTTCTTTATCTAGAAAAACTGAAGAAGAACAAGGGAAATGTCCTTTCTACTTTA
GCTCAGCGCTTTAGGCGATTTAAAACATGA
mRNA sequenceShow/hide mRNA sequence
ATGCATGGGATGGAGAAGAGTTCGACTGAGCTGCATGGGATGCTAAAAACTGCTAAGTTGAACATCAAATCCAGTCCTGAGGTTTTGATGGTGCAAAAAGGGAAGAATCC
TAAGAAAAGGGAACAAGATCAAGGAAAAGGTAGGGACAAAGTTGTTGCCAAGGCAACAAAAGTTGATGCTCATGCTGCAGCTAGGCCCAAACATAAAGAGCCTAAACCAC
CCAAGGAAGGAGAATGTTATCACTGCAAGAAAATTGGGCATTGGAAGAGGATCTGTCTTCTTTATCTAGAAAAACTGAAGAAGAACAAGGGAAATGTCCTTTCTACTTTA
GCTCAGCGCTTTAGGCGATTTAAAACATGA
Protein sequenceShow/hide protein sequence
MHGMEKSSTELHGMLKTAKLNIKSSPEVLMVQKGKNPKKREQDQGKGRDKVVAKATKVDAHAAARPKHKEPKPPKEGECYHCKKIGHWKRICLLYLEKLKKNKGNVLSTL
AQRFRRFKT